Difference between revisions of "YGL235W"

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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=YGL235W YGL235W]  
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://www.yeastgenome.org/cgi-bin/locus.pl?dbid=S000003204 YGL235W]  
 
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name'''        ||'' ''
 
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name'''        ||'' ''
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|nowrap| Chr VII:55279..55815
 
|nowrap| Chr VII:55279..55815
 
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Primary SGDID'''          || S000003204
 
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'''Description of {{PAGENAME}}:''' Putative protein of unknown function; potential Cdc28p substrate<ref name='S000074306'>Ubersax JA, et al. (2003) Targets of the cyclin-dependent kinase Cdk1. Nature 425(6960):859-64
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'''Description of YGL235W:''' Putative protein of unknown function; potential Cdc28p substrate; null mutant displays increased resistance to antifungal agents gliotoxin, cycloheximide and H2O2<ref name='S000125271'>Chamilos G, et al. (2008) Genomewide Screening for Genes Associated with Gliotoxin Resistance and Sensitivity in Saccharomyces cerevisiae. Antimicrob Agents Chemother 52(4):1325-9 {{SGDpaper|S000125271}} PMID 18212113</ref><ref name='S000074306'>Ubersax JA, et al. (2003) Targets of the cyclin-dependent kinase Cdk1. Nature 425(6960):859-64
 
  {{SGDpaper|S000074306}} PMID 14574415</ref>
 
  {{SGDpaper|S000074306}} PMID 14574415</ref>
 
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=== Protein Details ===
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[[Category:Topic:Protein Details]]
 
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==== Protein Modification ====
 
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[[Category:Topic:Protein Details:Protein Modification]]
 
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'''Modification(s)''': Phosphorylation [[Category:Modification:Phosphorylation]]
 
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Identified as an efficient substrate of Clb2-Cdk1-as1 in a screen of a proteomic GST-fusion library. <ref name='S000074306'>Ubersax JA, et al. (2003) Targets of the cyclin-dependent kinase Cdk1. Nature 425(6960):859-64 {{SGDpaper|S000074306}} PMID 14574415</ref> <ref name = 'CAset7903-2004-01-27'>submitted by [http://db.yeastgenome.org/cgi-bin/colleague/colleagueSearch?id=7903 Jeff Ubersax] on 2004-01-27</ref>
 
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==Community Commentary==
 
==Community Commentary==
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===[[UW-Stout/Sensitivity To Nitrogen Starvation]]===
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[[FIle: YGL235W_growth plate.JPG|thumb|Growth of YGL235W on synthetic defined media (SDC).]]
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[[File: YGL235W starvation plate1.JPG|thumb|Growth of YFL064C on omission media that lacks nitrogen.]]
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[[File: YGL235W_revival plate.JPG|thumb|Growth of transferred BY4735 on Synthetic defined media.]]
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Knocking out the YGL235Wseems to have no effect on growth after incubating for 5 days on the Nitrogen omitted media.
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===[[UW-Stout/Ultraviolet Light|Ultraviolet Sensitivity]]===
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[[File:YGL235W uv light.jpg|300 px]]
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[[File:BY4735(wild) uv light.jpg|300 px]]
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YGL235W is more sensitive than BY4735(wild) given that there is less colonizes present when under the same stress.
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{{UW-Stout}}
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===[[UW-Stout/Growth_Curve|Growth Curve]]===
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[[File:ygl235w_growth.png]]
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In a BY4735 background, knocking out YGL235W seems to have a moderate effect on growth rate in log-phase.  In this assay, the BY4735 strain's doubling time was 124 minutes, while the YGL235W knock-out strain's doubling time was 209 minutes.
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===[[UW-Stout/G-418 | G-418 Stress]]===
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[[File:image003.png]]
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In the BY4735 background, knocking out YGL235W seems to have a little effect on the growth rate. In the knock-out experiment, the BY4735 strain's doubling time was 149 minutes, whereas the YGL235W knock-out strain's doubling time was 235 minutes. The calibration experiment, the BY4735 strain's doubling time was 64 minutes, whereas the YGL235W knock-out strain's doubling time was 93 minutes.
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===Methanol Sensitivity===
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The wild type had a doubling time of 160 min, the YGL235w had a doubling time of 160 min. The strain was sensitive to the methanol.
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[https://wiki.yeastgenome.org/index.php/UW-Stout/Methanol]
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[[file:YGL235W_Methanol_Sensitivity.png]]
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===Heat Shock===
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[[File:YGL235W Heat Shock.PNG]]
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Heat shock had no change on the doubling time, but the starting amount of yeast cells less. The heat seemed to kill off the cells, the longer they were in the hot water bath.
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===Stressing with Hydroxyurea===
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[[UW-Stout/Hydroxyurea|Hydroxyurea Protocol]]
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-The wild type strain had only a small difference in doubling time when stressed with Hydroxyurea;YGL235W had about a 20 minute difference in doubling time when stressed with hydroxyurea, indicating that this gene most likely does not play a vital role in DNA replication.
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[[file:HU_YGL235W.png|left]]
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===Fermentation===
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Fermentation protocol link [https://wiki.yeastgenome.org/index.php/UW-Stout/Fermentation]
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- There appears to be no major difference in fermentation rate. The lower final ethanol percentage could be a result of evaporation. If this experiment were to be carried out again then it should be done in an air tight container.
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[[File:fer YGL235W.PNG]]
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<!-- PLEASE ADD Community Commentary ABOVE THIS MESSAGE. See below for an example of community annotation -->
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<!--
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Specifically higher expression in carbon limited chemostat cultures versus carbon excess.
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<ref>Boer VM, et al. (2003) The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur.
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J Biol Chem 278(5):3265-74</ref>
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-->
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===Caffeine Sensitivity===
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[[File:YGL235W_vs_BY4735.jpg|YGL235W VS BY4735]]
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Caffeine Protocol [[UW-Stout/Caffeine]]
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Compared to the wild type yeast strain this gene was more sensitive to caffeine.
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----
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===Stressing with pH===
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pH stress protocol link [https://wiki.yeastgenome.org/index.php/UW-Stout/pH]
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The yeast strain YGL235W had somewhat of a significant difference compared to the wild type even though the wild type keeps growing but not as fast as the yeast strain YG1235W does and the strain does plato's at the end and continues to plummets and the wild type keeps slowly climbing at a steady rate of growth and time. So, Therefore we have concluded that the data signifies that the test condition was inconclusive to the experiment.
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[[File:pH-YGL235W.PNG]]
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===Cold Shock Sensitivity===
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[[File:YGL235WBB.png]]
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Protocol: [https://wiki.yeastgenome.org/index.php/UW-Stout/Cold_Shock Cold Shock]
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YGL235W is neither more or less sensitive to the cold than the wild type strain. This is shown because the doubling times change the same amount before and after the cold shock in both the wild type strain and YGL235W.
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==References==
 
==References==
 
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Latest revision as of 18:53, 17 December 2019

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Systematic name YGL235W
Gene name
Aliases
Feature type ORF, Uncharacterized
Coordinates Chr VII:55279..55815
Primary SGDID S000003204


Description of YGL235W: Putative protein of unknown function; potential Cdc28p substrate; null mutant displays increased resistance to antifungal agents gliotoxin, cycloheximide and H2O2[1][2]




Community Commentary

About Community Commentary. Please share your knowledge!

Protein Details

Protein Modification

Modification(s): Phosphorylation

Identified as an efficient substrate of Clb2-Cdk1-as1 in a screen of a proteomic GST-fusion library. [2] [3]

UW-Stout/Sensitivity To Nitrogen Starvation

Growth of YGL235W on synthetic defined media (SDC).
Growth of YFL064C on omission media that lacks nitrogen.
File:YGL235W revival plate.JPG
Growth of transferred BY4735 on Synthetic defined media.

Knocking out the YGL235Wseems to have no effect on growth after incubating for 5 days on the Nitrogen omitted media.


Ultraviolet Sensitivity

YGL235W uv light.jpg BY4735(wild) uv light.jpg

YGL235W is more sensitive than BY4735(wild) given that there is less colonizes present when under the same stress.

This gene is part of the UW-Stout Orphan Gene Project. Learn more here.

Growth Curve

ygl235w growth.png

In a BY4735 background, knocking out YGL235W seems to have a moderate effect on growth rate in log-phase. In this assay, the BY4735 strain's doubling time was 124 minutes, while the YGL235W knock-out strain's doubling time was 209 minutes.

G-418 Stress

image003.png

In the BY4735 background, knocking out YGL235W seems to have a little effect on the growth rate. In the knock-out experiment, the BY4735 strain's doubling time was 149 minutes, whereas the YGL235W knock-out strain's doubling time was 235 minutes. The calibration experiment, the BY4735 strain's doubling time was 64 minutes, whereas the YGL235W knock-out strain's doubling time was 93 minutes.

Methanol Sensitivity

The wild type had a doubling time of 160 min, the YGL235w had a doubling time of 160 min. The strain was sensitive to the methanol.

[1]

YGL235W Methanol Sensitivity.png


Heat Shock

YGL235W Heat Shock.PNG

Heat shock had no change on the doubling time, but the starting amount of yeast cells less. The heat seemed to kill off the cells, the longer they were in the hot water bath.

Stressing with Hydroxyurea

Hydroxyurea Protocol -The wild type strain had only a small difference in doubling time when stressed with Hydroxyurea;YGL235W had about a 20 minute difference in doubling time when stressed with hydroxyurea, indicating that this gene most likely does not play a vital role in DNA replication.

HU YGL235W.png

Fermentation

Fermentation protocol link [2] - There appears to be no major difference in fermentation rate. The lower final ethanol percentage could be a result of evaporation. If this experiment were to be carried out again then it should be done in an air tight container.

fer YGL235W.PNG


Caffeine Sensitivity

YGL235W VS BY4735 Caffeine Protocol UW-Stout/Caffeine Compared to the wild type yeast strain this gene was more sensitive to caffeine.

Stressing with pH

pH stress protocol link [3]


The yeast strain YGL235W had somewhat of a significant difference compared to the wild type even though the wild type keeps growing but not as fast as the yeast strain YG1235W does and the strain does plato's at the end and continues to plummets and the wild type keeps slowly climbing at a steady rate of growth and time. So, Therefore we have concluded that the data signifies that the test condition was inconclusive to the experiment.

pH-YGL235W.PNG

Cold Shock Sensitivity

YGL235WBB.png


Protocol: Cold Shock


YGL235W is neither more or less sensitive to the cold than the wild type strain. This is shown because the doubling times change the same amount before and after the cold shock in both the wild type strain and YGL235W.


References

See Help:References on how to add references

  1. ↑ Chamilos G, et al. (2008) Genomewide Screening for Genes Associated with Gliotoxin Resistance and Sensitivity in Saccharomyces cerevisiae. Antimicrob Agents Chemother 52(4):1325-9 SGD PMID 18212113
  2. ↑ 2.0 2.1 Ubersax JA, et al. (2003) Targets of the cyclin-dependent kinase Cdk1. Nature 425(6960):859-64 SGD PMID 14574415 Cite error: Invalid <ref> tag; name "S000074306" defined multiple times with different content
  3. ↑ submitted by Jeff Ubersax on 2004-01-27

See Help:Categories on how to add the wiki page for this gene to a Category

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