Difference between revisions of "FTP Site"
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= Guide to the FTP Site = | = Guide to the FTP Site = | ||
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| + | This Anonymous FTP site contains data from the SGD Oracle database, | ||
| + | including lists of database IDs, ORF locations, Gene Ontology | ||
| + | annotations, phenotype data, SAGE data, genetic mapping results, and | ||
| + | literature curation. | ||
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| [ftp://ftp.yeastgenome.org/pub/yeast/chromosomal_feature chromosomal_feature ] | | [ftp://ftp.yeastgenome.org/pub/yeast/chromosomal_feature chromosomal_feature ] | ||
| [ftp://ftp.yeastgenome.org/pub/yeast/chromosomal_feature/README README ] | | [ftp://ftp.yeastgenome.org/pub/yeast/chromosomal_feature/README README ] | ||
| + | | Information on ORFs and non-protein coding genes and gene products | ||
| + | annotated at SGD. Includes mapping of ORF names to IDs (eg SwissProt, | ||
| + | Genbank), chromosomal coordinates, intron info, changes annotations, | ||
| + | etc. | ||
|- | |- | ||
| [ftp://ftp.yeastgenome.org/pub/yeast/gene_registry gene_registry ] | | [ftp://ftp.yeastgenome.org/pub/yeast/gene_registry gene_registry ] | ||
| [ftp://ftp.yeastgenome.org/pub/yeast/gene_registry/README README ] | | [ftp://ftp.yeastgenome.org/pub/yeast/gene_registry/README README ] | ||
| + | | Information about registered S. cerevisiae gene names. | ||
|- | |- | ||
| [ftp://ftp.yeastgenome.org/pub/yeast/literature_curation literature_curation ] | | [ftp://ftp.yeastgenome.org/pub/yeast/literature_curation literature_curation ] | ||
| [ftp://ftp.yeastgenome.org/pub/yeast/literature_curation/README README ] | | [ftp://ftp.yeastgenome.org/pub/yeast/literature_curation/README README ] | ||
| + | | Information from the SGD curation of the literature, including SGD's | ||
| + | contributions to the Gene Ontology (GO) project and phenotype data from the | ||
| + | Systematic Deletion Consortium. | ||
|- | |- | ||
| [ftp://ftp.yeastgenome.org/pub/yeast/oracle_schema oracle_schema ] | | [ftp://ftp.yeastgenome.org/pub/yeast/oracle_schema oracle_schema ] | ||
| [ftp://ftp.yeastgenome.org/pub/yeast/oracle_schema/README README ] | | [ftp://ftp.yeastgenome.org/pub/yeast/oracle_schema/README README ] | ||
| + | | Contains SQL scripts used to create the SGD Oracle database. | ||
|- | |- | ||
| [ftp://ftp.yeastgenome.org/pub/yeast/protein_info protein_info ] | | [ftp://ftp.yeastgenome.org/pub/yeast/protein_info protein_info ] | ||
| [ftp://ftp.yeastgenome.org/pub/yeast/protein_info/README README ] | | [ftp://ftp.yeastgenome.org/pub/yeast/protein_info/README README ] | ||
| + | | Protein structure and composition data, includes molecular weight, | ||
| + | codon bias, etc. | ||
|- | |- | ||
| − | |[ftp://ftp.yeastgenome.org/pub/yeast/sequence sequence ] | + | | [ftp://ftp.yeastgenome.org/pub/yeast/sequence sequence ] |
| [ftp://ftp.yeastgenome.org/pub/yeast/sequence/README README ] | | [ftp://ftp.yeastgenome.org/pub/yeast/sequence/README README ] | ||
| + | | [[ FTP_Sequence | Contains all S. cerevisiae DNA and protein sequence data ]] | ||
|- | |- | ||
| − | |[ftp://ftp.yeastgenome.org/pub/yeast/sequence_similarity sequence_similarity ] | + | | [ftp://ftp.yeastgenome.org/pub/yeast/sequence_similarity sequence_similarity ] |
| [ftp://ftp.yeastgenome.org/pub/yeast/sequence_similarity/README README ] | | [ftp://ftp.yeastgenome.org/pub/yeast/sequence_similarity/README README ] | ||
| + | | Genome to genome sequence similarity results | ||
|- | |- | ||
|[ftp://ftp.yeastgenome.org/pub/yeast/systematic_results systematic_results ] | |[ftp://ftp.yeastgenome.org/pub/yeast/systematic_results systematic_results ] | ||
| [ftp://ftp.yeastgenome.org/pub/yeast/systematic_results/README README ] | | [ftp://ftp.yeastgenome.org/pub/yeast/systematic_results/README README ] | ||
| + | | Systematic genome analysis results; for more see: [http://sgdlite.princeton.edu/cgi-bin/download_dataset Datasets at SGDLite (Princeton)] | ||
|- | |- | ||
|[ftp://ftp.yeastgenome.org/pub/yeast/submission_forms/ submission_forms ] | |[ftp://ftp.yeastgenome.org/pub/yeast/submission_forms/ submission_forms ] | ||
| [ftp://ftp.yeastgenome.org/pub/yeast/submission_forms/README README ] | | [ftp://ftp.yeastgenome.org/pub/yeast/submission_forms/README README ] | ||
| + | | TEXT forms that can be used to submit data to SGD. | ||
|} | |} | ||
Latest revision as of 11:49, 22 June 2007
Guide to the FTP Site
This Anonymous FTP site contains data from the SGD Oracle database, including lists of database IDs, ORF locations, Gene Ontology annotations, phenotype data, SAGE data, genetic mapping results, and literature curation.
Subdirectories
| chromosomal_feature | README | Information on ORFs and non-protein coding genes and gene products
annotated at SGD. Includes mapping of ORF names to IDs (eg SwissProt, Genbank), chromosomal coordinates, intron info, changes annotations, etc. |
| gene_registry | README | Information about registered S. cerevisiae gene names. |
| literature_curation | README | Information from the SGD curation of the literature, including SGD's
contributions to the Gene Ontology (GO) project and phenotype data from the Systematic Deletion Consortium. |
| oracle_schema | README | Contains SQL scripts used to create the SGD Oracle database. |
| protein_info | README | Protein structure and composition data, includes molecular weight,
codon bias, etc. |
| sequence | README | Contains all S. cerevisiae DNA and protein sequence data |
| sequence_similarity | README | Genome to genome sequence similarity results |
| systematic_results | README | Systematic genome analysis results; for more see: Datasets at SGDLite (Princeton) |
| submission_forms | README | TEXT forms that can be used to submit data to SGD. |
