Difference between revisions of "YMR080C"
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| − | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http:// | + | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://www.yeastgenome.org/cgi-bin/locus.pl?dbid=S000004685 YMR080C] |
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name''' ||''NAM7 '' | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name''' ||''NAM7 '' | ||
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| − | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Aliases''' ||''IFS2, MOF4, UPF1'' | + | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Aliases''' ||''IFS2, MOF4, SUP113, UPF1'' |
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Feature type''' || ORF, Verified[[Category:ORF]][[Category:ORF, Verified]] | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Feature type''' || ORF, Verified[[Category:ORF]][[Category:ORF, Verified]] | ||
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates''' | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates''' | ||
| − | |nowrap| Chr XIII: | + | |nowrap| Chr XIII:429627..426712 |
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| − | | | + | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Primary SGDID''' || S000004685 |
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| − | '''Description of | + | '''Description of YMR080C:''' ATP-dependent RNA helicase of the SFI superfamily involved in nonsense mediated mRNA decay; required for efficient translation termination at nonsense codons and targeting of NMD substrates to P-bodies; involved in telomere maintenance<ref name='S000114270'>Askree SH, et al. (2004) A genome-wide screen for Saccharomyces cerevisiae deletion mutants that affect telomere length. Proc Natl Acad Sci U S A 101(23):8658-63 {{SGDpaper|S000114270}} PMID 15161972</ref><ref name='S000116680'>Sheth U and Parker R (2006) Targeting of aberrant mRNAs to cytoplasmic processing bodies. Cell 125(6):1095-109 {{SGDpaper|S000116680}} PMID 16777600</ref><ref name='S000127349'>Takahashi S, et al. (2008) Upf1 potentially serves as a RING-related E3 ubiquitin ligase via its association with Upf3 in yeast. RNA 14(9):1950-8 {{SGDpaper|S000127349}} PMID 18676617</ref><ref name='S000061923'>de la Cruz J, et al. (1999) Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 24(5):192-8 |
{{SGDpaper|S000061923}} PMID 10322435</ref> | {{SGDpaper|S000061923}} PMID 10322435</ref> | ||
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==Community Commentary== | ==Community Commentary== | ||
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| + | Specifically higher expression in carbon limited chemostat cultures versus carbon excess. | ||
| + | <ref>Boer VM, et al. (2003) The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur. | ||
| + | J Biol Chem 278(5):3265-74</ref> | ||
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==References== | ==References== | ||
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Latest revision as of 07:45, 23 January 2012
Share your knowledge...Edit this entry! <protect>
| Systematic name | YMR080C |
| Gene name | NAM7 |
| Aliases | IFS2, MOF4, SUP113, UPF1 |
| Feature type | ORF, Verified |
| Coordinates | Chr XIII:429627..426712 |
| Primary SGDID | S000004685 |
Description of YMR080C: ATP-dependent RNA helicase of the SFI superfamily involved in nonsense mediated mRNA decay; required for efficient translation termination at nonsense codons and targeting of NMD substrates to P-bodies; involved in telomere maintenance[1][2][3][4]
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Community Commentary
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Interactions
Two Hybrid
Two Hybrid interaction with SNP1, NMD3, DBP2, NMD4, DCP2, NMD5, NMD2
Yeast Two-Hybrid screen with Upf1p as bait identified several interacting proteins [5] [6]
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References
See Help:References on how to add references
- ↑ Askree SH, et al. (2004) A genome-wide screen for Saccharomyces cerevisiae deletion mutants that affect telomere length. Proc Natl Acad Sci U S A 101(23):8658-63 SGD PMID 15161972
- ↑ Sheth U and Parker R (2006) Targeting of aberrant mRNAs to cytoplasmic processing bodies. Cell 125(6):1095-109 SGD PMID 16777600
- ↑ Takahashi S, et al. (2008) Upf1 potentially serves as a RING-related E3 ubiquitin ligase via its association with Upf3 in yeast. RNA 14(9):1950-8 SGD PMID 18676617
- ↑ de la Cruz J, et al. (1999) Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 24(5):192-8 SGD PMID 10322435
- ↑ He F and Jacobson A (1995) Identification of a novel component of the nonsense-mediated mRNA decay pathway by use of an interacting protein screen. Genes Dev 9(4):437-54 SGD PMID 7883168
- ↑ submitted by Jurgen Wittmann on 2003-04-30
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