Difference between revisions of "YER172C"
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| − | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http:// | + | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://www.yeastgenome.org/cgi-bin/locus.pl?dbid=S000000974 YER172C] |
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name''' ||''BRR2 '' | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name''' ||''BRR2 '' | ||
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates''' | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates''' | ||
| − | |nowrap| Chr V: | + | |nowrap| Chr V:536021..529530 |
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| − | | | + | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Primary SGDID''' || S000000974 |
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| − | '''Description of | + | '''Description of YER172C:''' RNA-dependent ATPase RNA helicase (DEIH box); required for disruption of U4/U6 base-pairing in native snRNPs to activate the spliceosome for catalysis; homologous to human U5-200kD<ref name='S000053606'>Lauber J, et al. (1996) The HeLa 200 kDa U5 snRNP-specific protein and its homologue in Saccharomyces cerevisiae are members of the DEXH-box protein family of putative RNA helicases. EMBO J 15(15):4001-15 {{SGDpaper|S000053606}} PMID 8670905</ref><ref name='S000044662'>Noble SM and Guthrie C (1996) Identification of novel genes required for yeast pre-mRNA splicing by means of cold-sensitive mutations. Genetics 143(1):67-80 {{SGDpaper|S000044662}} PMID 8722763</ref><ref name='S000061922'>Raghunathan PL and Guthrie C (1998) RNA unwinding in U4/U6 snRNPs requires ATP hydrolysis and the DEIH-box splicing factor Brr2. Curr Biol 8(15):847-55 {{SGDpaper|S000061922}} PMID 9705931</ref><ref name='S000056328'>Xu D, et al. (1996) An RNA-dependent ATPase associated with U2/U6 snRNAs in pre-mRNA splicing. Nature 381(6584):709-13 |
| − | + | {{SGDpaper|S000056328}} PMID 8649518</ref> | |
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==Community Commentary== | ==Community Commentary== | ||
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| + | Specifically higher expression in carbon limited chemostat cultures versus carbon excess. | ||
| + | <ref>Boer VM, et al. (2003) The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur. | ||
| + | J Biol Chem 278(5):3265-74</ref> | ||
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==References== | ==References== | ||
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Latest revision as of 07:45, 23 January 2012
Share your knowledge...Edit this entry! <protect>
| Systematic name | YER172C |
| Gene name | BRR2 |
| Aliases | PRP44, RSS1, SLT22, SNU246 |
| Feature type | ORF, Verified |
| Coordinates | Chr V:536021..529530 |
| Primary SGDID | S000000974 |
Description of YER172C: RNA-dependent ATPase RNA helicase (DEIH box); required for disruption of U4/U6 base-pairing in native snRNPs to activate the spliceosome for catalysis; homologous to human U5-200kD[1][2][3][4]
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Community Commentary
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Interactions
Two Hybrid
Two Hybrid interaction with Prp8
C-terminus of Prp8 binds to full length Brr2. N-terminus of Prp8 binds to Prp39 [5] [6]
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References
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- ↑ Lauber J, et al. (1996) The HeLa 200 kDa U5 snRNP-specific protein and its homologue in Saccharomyces cerevisiae are members of the DEXH-box protein family of putative RNA helicases. EMBO J 15(15):4001-15 SGD PMID 8670905
- ↑ Noble SM and Guthrie C (1996) Identification of novel genes required for yeast pre-mRNA splicing by means of cold-sensitive mutations. Genetics 143(1):67-80 SGD PMID 8722763
- ↑ Raghunathan PL and Guthrie C (1998) RNA unwinding in U4/U6 snRNPs requires ATP hydrolysis and the DEIH-box splicing factor Brr2. Curr Biol 8(15):847-55 SGD PMID 9705931
- ↑ Xu D, et al. (1996) An RNA-dependent ATPase associated with U2/U6 snRNAs in pre-mRNA splicing. Nature 381(6584):709-13 SGD PMID 8649518
- ↑ van Nues RW and Beggs JD (2001) Functional contacts with a range of splicing proteins suggest a central role for Brr2p in the dynamic control of the order of events in spliceosomes of Saccharomyces cerevisiae. Genetics 157(4):1451-67 SGD PMID 11290703
- ↑ submitted by Richard Grainger on 2003-04-11
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