Tabular Form of Meiotic Double-Stranded Breaks in the Yeast Genome
The meiotic double-stranded breaks data on Chromosome III was kindly provided in both tabular and graphical form by Dr. Frédéric Baudat and Dr. Alain Nicolas of the Institut Curie, Section de Recherche. For further information, please see their paper, Proc. Natl. Acad. Sci. (1997) USA 94:5213-5218. Please note that the coordinates given for the double stranded breaks are based on the chromosome III sequence of 1/31/97. Due to sequence changes on chromosome III since this time, the coordinates shown in the table below are not identical to the current coordinates for chromosome III.
| Coordinates of double stranded break sites on chromosome III (using 01/31/97 sequence) | (bp) | DSBs located 5' of this ORF (or in other relative locations, where indicated): | % of cells containing double-stranded break |
|---|---|---|---|
| 17140 | 300 | YCL063W | 0.2 |
| 22241 | 100 | YCL061C | 0.1 |
| 24341 | 100 | YCL058C; YCL057W/PRD1 | 0.2 |
| 24541 | 100 | YCL058C; YCL057W/PRD1 | 0.3 |
| 38995 | 50 | DTP1 | 0.7 |
| 39200 | 50 | DTP1 | 0.2 |
| 40845 40945 |
150 150 |
YCL049C YCL049C |
combined value of 2.0 |
| 41245 | 150 | YCL049C | 0.1 |
| 41995 | 200 | YCL048W | 0.4 |
| 44578 | 500 | YCL047C | 0.2 |
| 46987 | 40 | YCL045C | 0.4 |
| 47057 | 40 | YCL045C | 0.5 |
| 48402 | 75 | YCL044C | 0.4 |
| 50254 50604 50727 |
125 125 100 |
PDI1, GLK1 PDI1, GLK1 PDI1, GLK1 |
combined value of 5.0 |
| 51377 51627 51827 |
100 150 200 |
in GLK1 coding region in GLK1 coding region in GLK1 coding region |
combined value of 2.0 |
| 52427 | 300 | YCL039W | 2.0 |
| 56763 | 100 | YCL038C | 0.6 |
| 58803 | 50 | YCL037C/SRO9 | 0.03 |
| 58893 | 40 | YCL037C/SRO9 | 0.1 |
| 61251 61476 61526 |
75 100 100 |
YCL035C; YCL034W YCL035CYCL034W YCL035C; YCL034W |
combined value of 0.9 |
| 63269 | 100 | YCL033C; | 0.1 |
| 65600 | 350 | YCL031C/RRP7 | 0.3 |
| 68351 68501 68601 |
50 50 50 |
HIS4 HIS4 HIS4 |
combined value of 0.9 |
| 70078 | 125 | BIK1 | 0.3 |
| 71551 | 250 | FUS1 (spread across 300 bp) | 0.3 |
| 74208 | 200 | 3' of FUS1; 3' of YCL026C-A/FRM2 (previously called YCL0X8C) |
2.7 |
| 75951 | 650 | YCL026C-A/FRM2 | 0.7 |
| 78054 78104 78204 78304 78381 78431 |
50 50 50 50 75 75 |
YCL025C/AGP1 YCL025C/AGP1 YCL025C/AGP1 YCL025C/AGP1 YCL025C/AGP1 YCL025C/AGP1 |
combined value of 5.0 |
| 90667 | 100 | LEU2 | 1.6 |
| 94120 | 150 | NFS1 | 0.3 |
| 95568 | 200 | YCL016C-YCL014W/BUD3 | 0.9 |
| 101456 | 100 | 3' of YCL012W; 3' of YCL011C/GBP2 | 0.02 |
| 101556 | 100 | 3' of YCL012W; 3' of YCL011C/GBP2 | 0.1 |
| 103081 | 50 | YCL011C/GBP2 | 0.02 |
| 103181 | 50 | YCL011C/GBP2 | 0.03 |
| 104081 | 50 | YCL010C | 1.2 |
| 105331 | 100 | YCL009C/ILV6 | 1.2 |
| 106581 | 150 | YCL008C/STP22 | 0.4 |
| 107531 | 200 | YCL007C/CWH36; YCL006C; YCL005W | 0.4 |
| 108610 | 100 | PEL1 | 0.3 |
| 111400 | 250 | YCL002C; YCL001W/RER1 | 0.2 |
| 163369 164069 |
150 350 |
PMP1; in YCR025C coding region PMP1; in YCR025C coding region |
combined value of 1.6 |
| 184890 | 125 | YCR033W | 0 |
| 189183 | 100 | YCR034W/FEN1 | 0 |
| 190563 | 450 | 3' of YCR034W/FEN1; 3' of YCR035C/RRP43 | 0 |
| 191900 | 400 | YCR035C/RRP43; YCR036W/RBK1 | 0.5 |
| 196016 | 125 | YCR037C/PHO87 | 1.7 |
| 198284 | 75 | BUD5 | 0 |
| 198959 | 150 | a2; a1 | 0 |
| 199550 | 150 | in a1 coding region; YCR041W; 3' of a1; 3' of TSM1 | 0.6 |
| 201300 | 100 | in TSM1 coding region | 0.3 |
| 204200 | 250 | TSM1 | 0.4 |
| 204342 | 350 | YCR043C | 0.3 |
| 206692 | 200 | YCR044C | 0.4 |
| 208442 | 150 | YCR045C | 0.6 |
| 209292 | 100 | YCR046C/IMG1 | 1.8 |
| 209942 | 100 | in YCR047C coding region | 0.1 |
| 210425 210525 |
50 50 |
YCR047C; YCR048W/ARE1 YCR047CYCR048W/ARE1 |
combined value of 8.8 |
| 210942 | 50 | in YCR048W/ARE1 and YCR049C coding regions | 0.02 |
| 211092 | 50 | YCR049C; in " YCR048W/ARE1 coding region | 0.1 |
| 212727 | 250 | YCR051W | 0.8 |
| 213580 | 100 | YCR052W/RSC6 | 0.6 |
| 215327 | 150 | THR4 | 1.0 |
| 219049 | 150 | CTR86 | 0.7 |
| 222049 | 50 | PWP2 | 0.2 |
| 222154 | 35 | PWP2 | 0.4 |
| 223075 | 65 | YCR059C; YCR060W (spread across 100 bp) | 0.6 |
| 224035 223695 |
75 35 |
YCR061W YCR061W |
combined value of 1.0 |
| 224110 | 100 | YCR061W | 4.7 |
| 227110 | 300 | YCR063W | 1.4 |
| 227160 | 250 | YCR064C; YCR065W/HCM1 | 3.9 |
| 230010 | 600 | RAD18 | 0.3 |
| 231610 | 1000 | 3' of RAD18; 3' of YCR067C/SED4 | 0.4 |
| 235200 | 100 | YCR067C/SED4; YCR068W | 2.0 |
| 235500 | 150 | YCR067C/SED4; YCR068W | 0.8 |
| 237500 | 150 | YCR069W/SCC3 | 0.7 |
| 239450 | 100 | YCR071C/IMG2 | 0.7 |
| 241200 | 100 | YCR072C | 0.6 |
| 245550 | 200 | YCR073C/SSK22; YCR073W-A/SOL2 | 2.8 |
| 247550 | 100 | ERS1 | 0.5 |
| 248832 | 75 | YCR076C | 0.3 |
| 251483 | 100 | YCR077C/PAT1; YCR079W | 1.3 |
| 257383 | 1000 | in YCR081W/SRB8 coding region; YCR082W or YCR083W |
0.5 |
| 260883 | 500 | TUP1 | 0 |
| 261433 | 450 | TUP1 | 0 |
| 265583 | 200 | YCR089W/FIG2 | 0 |
| 271764 | 400 | YCR090C; KIN28 | 0 |
| 273014 | 350 | YCR090C; KIN28 | 0 |
| 278632 278717 |
35 50 |
MSH3; YCR093W/CDC39 MSH3; YCR093W/CDC39 |
combined value of 1.2 |
| 285391 | 100 | YCR094W/CDC50 | 0.6 |
| 288050 | 50 | YCR095C | 0 |
