Difference between revisions of "tR(CCU)J"
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| − | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http:// | + | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://www.yeastgenome.org/cgi-bin/locus.pl?dbid=S000006707 tR(CCU)J] |
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name''' ||''HSX1 '' | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name''' ||''HSX1 '' | ||
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates''' | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates''' | ||
| − | |nowrap| Chr X: | + | |nowrap| Chr X:538555..538626 |
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| − | | | + | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Primary SGDID''' || S000006707 |
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| − | '''Description of | + | '''Description of tR(CCU)J:''' Arginine tRNA (tRNA-Arg), predicted by tRNAscan-SE analysis; low abundance tRNA required for growth on nonfermentable carbon sources at high temperatures, for synthesis of heat shock protein Ssc1p, and for Ty1 retrotransposition through the regulation of translational frameshifting<ref name='S000147623'>Chan PP and Lowe TM (2009) GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res 37(Database issue):D93-7 {{SGDpaper|S000147623}} PMID 18984615</ref><ref name='S000054671'>Kawakami K, et al. (1992) Ty element-induced temperature-sensitive mutations of Saccharomyces cerevisiae. Genetics 131(4):821-32 {{SGDpaper|S000054671}} PMID 1325386</ref><ref name='S000044105'>Kawakami K, et al. (1993) A rare tRNA-Arg(CCU) that regulates Ty1 element ribosomal frameshifting is essential for Ty1 retrotransposition in Saccharomyces cerevisiae. Genetics 135(2):309-20 |
{{SGDpaper|S000044105}} PMID 8243996</ref> | {{SGDpaper|S000044105}} PMID 8243996</ref> | ||
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==Community Commentary== | ==Community Commentary== | ||
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| + | Specifically higher expression in carbon limited chemostat cultures versus carbon excess. | ||
| + | <ref>Boer VM, et al. (2003) The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur. | ||
| + | J Biol Chem 278(5):3265-74</ref> | ||
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==References== | ==References== | ||
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Latest revision as of 07:45, 23 January 2012
Share your knowledge...Edit this entry! <protect>
| Systematic name | tR(CCU)J |
| Gene name | HSX1 |
| Aliases | |
| Feature type | tRNA |
| Coordinates | Chr X:538555..538626 |
| Primary SGDID | S000006707 |
Description of tR(CCU)J: Arginine tRNA (tRNA-Arg), predicted by tRNAscan-SE analysis; low abundance tRNA required for growth on nonfermentable carbon sources at high temperatures, for synthesis of heat shock protein Ssc1p, and for Ty1 retrotransposition through the regulation of translational frameshifting[1][2][3]
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Contents
Community Commentary
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References
See Help:References on how to add references
- ↑ Chan PP and Lowe TM (2009) GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res 37(Database issue):D93-7 SGD PMID 18984615
- ↑ Kawakami K, et al. (1992) Ty element-induced temperature-sensitive mutations of Saccharomyces cerevisiae. Genetics 131(4):821-32 SGD PMID 1325386
- ↑ Kawakami K, et al. (1993) A rare tRNA-Arg(CCU) that regulates Ty1 element ribosomal frameshifting is essential for Ty1 retrotransposition in Saccharomyces cerevisiae. Genetics 135(2):309-20 SGD PMID 8243996
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