Difference between revisions of "YNLCTy2-1"

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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=S000007135 YNLCTy2-1]  
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://www.yeastgenome.org/cgi-bin/locus.pl?dbid=S000007135 YNLCTy2-1]  
 
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name'''        ||'' ''
 
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name'''        ||'' ''
 
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Aliases'''          ||'' ''
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Aliases'''          ||''Ty2''
 
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Feature type'''          || retrotransposon[[Category:retrotransposon]]
 
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Feature type'''          || retrotransposon[[Category:retrotransposon]]
 
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates'''
 
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates'''
|nowrap| Chr XIV:567662..562366
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|nowrap| Chr XIV:567660..562364
 
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Primary SGDID'''          || S000007135
 
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Primary SGDID'''          || S000007135
 
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'''Description of YNLCTy2-1:''' Long Terminal Repeat (LTR) retrotransposon of the Copia (Pseudoviridae) group; contains genes TYA Gag and TYB Pol, encoding proteins involved in structure and function of virus-like particles, flanked by two direct repeats; mutated in S288C<ref name='S000113972'>Boeke JD and Devine SE (1998) Yeast retrotransposons: finding a nice quiet neighborhood. Cell 93(7):1087-9 {{SGDpaper|S000113972}} PMID 9657139</ref><ref name='S000072465'>Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 {{SGDpaper|S000072465}} PMID 9582191</ref><ref name='S000086174'>Lesage P and Todeschini AL (2005) Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 110(1-4):70-90
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'''Description of YNLCTy2-1:''' Ty2 element, LTR retrotransposon of the Copia (Pseudoviridae) group; contains genes TYA Gag and TYB Pol, encoding proteins involved in structure and function of virus-like particles, flanked by two direct repeats; mutated in S288C<ref name='S000113972'>Boeke JD and Devine SE (1998) Yeast retrotransposons: finding a nice quiet neighborhood. Cell 93(7):1087-9 {{SGDpaper|S000113972}} PMID 9657139</ref><ref name='S000072465'>Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 {{SGDpaper|S000072465}} PMID 9582191</ref><ref name='S000086174'>Lesage P and Todeschini AL (2005) Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 110(1-4):70-90
 
  {{SGDpaper|S000086174}} PMID 16093660</ref>
 
  {{SGDpaper|S000086174}} PMID 16093660</ref>
 
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Latest revision as of 14:05, 4 September 2012

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Systematic name YNLCTy2-1
Gene name
Aliases Ty2
Feature type retrotransposon
Coordinates Chr XIV:567660..562364
Primary SGDID S000007135


Description of YNLCTy2-1: Ty2 element, LTR retrotransposon of the Copia (Pseudoviridae) group; contains genes TYA Gag and TYB Pol, encoding proteins involved in structure and function of virus-like particles, flanked by two direct repeats; mutated in S288C[1][2][3]




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References

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  1. Boeke JD and Devine SE (1998) Yeast retrotransposons: finding a nice quiet neighborhood. Cell 93(7):1087-9 SGD PMID 9657139
  2. Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 SGD PMID 9582191
  3. Lesage P and Todeschini AL (2005) Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 110(1-4):70-90 SGD PMID 16093660

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