Difference between revisions of "YLR160C"
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| − | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http:// | + | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://www.yeastgenome.org/cgi-bin/locus.pl?dbid=S000004150 YLR160C] |
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name''' ||''ASP3-4 '' | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name''' ||''ASP3-4 '' | ||
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates''' | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates''' | ||
| − | |nowrap| Chr XII: | + | |nowrap| Chr XII:487289..486201 |
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| − | | | + | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Primary SGDID''' || S000004150 |
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| − | '''Description of | + | '''Description of YLR160C:''' Cell-wall L-asparaginase II involved in asparagine catabolism; expression induced during nitrogen starvation; ORF contains a short non-coding RNA that enhances expression of full-length gene; reference strain S288C has four copies of ASP3<ref name='S000136333'>Huang YC, et al. (2010) Intragenic transcription of a noncoding RNA modulates expression of ASP3 in budding yeast. RNA 16(11):2085-93 {{SGDpaper|S000136333}} PMID 20817754</ref><ref name='S000041101'>Kim KW, et al. (1988) Asparaginase II of Saccharomyces cerevisiae. Characterization of the ASP3 gene. J Biol Chem 263(24):11948-53 {{SGDpaper|S000041101}} PMID 3042786</ref><ref name='S000072524'>Oliveira EM, et al. (2003) The role of the GATA factors Gln3p, Nil1p, Dal80p and the Ure2p on ASP3 regulation in Saccharomyces cerevisiae. Yeast 20(1):31-7 |
| − | {{SGDpaper| | + | {{SGDpaper|S000072524}} PMID 12489124</ref> |
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==Community Commentary== | ==Community Commentary== | ||
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| + | === DNA and RNA Details === | ||
| + | [[Category:Topic:DNA and RNA Details]] | ||
| + | ==== Other DNA and RNA Details ==== | ||
| + | [[Category:Topic:DNA and RNA Details:Other DNA and RNA Details]] | ||
| + | '''Other Topic''': Transcript length regulation [[Category:Topic:Transcript length regulation]] | ||
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| + | ASP3 transcriptional start site is nitrogen regulated. Full length transcript is only produced during nitrogen starvation. <ref name='S000041101'>Kim KW, et al. (1988) Asparaginase II of Saccharomyces cerevisiae. Characterization of the ASP3 gene. J Biol Chem 263(24):11948-53 {{SGDpaper|S000041101}} PMID 3042786</ref> <ref name = 'CAset9260-2003-04-07'>submitted by [http://db.yeastgenome.org/cgi-bin/colleague/colleagueSearch?id=9260 Evan Hurowitz] on 2003-04-07</ref> | ||
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| + | Specifically higher expression in carbon limited chemostat cultures versus carbon excess. | ||
| + | <ref>Boer VM, et al. (2003) The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur. | ||
| + | J Biol Chem 278(5):3265-74</ref> | ||
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==References== | ==References== | ||
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Latest revision as of 07:45, 23 January 2012
Share your knowledge...Edit this entry! <protect>
| Systematic name | YLR160C |
| Gene name | ASP3-4 |
| Aliases | ASP3 |
| Feature type | ORF, Verified |
| Coordinates | Chr XII:487289..486201 |
| Primary SGDID | S000004150 |
Description of YLR160C: Cell-wall L-asparaginase II involved in asparagine catabolism; expression induced during nitrogen starvation; ORF contains a short non-coding RNA that enhances expression of full-length gene; reference strain S288C has four copies of ASP3[1][2][3]
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Contents
Community Commentary
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DNA and RNA Details
Other DNA and RNA Details
Other Topic: Transcript length regulation
ASP3 transcriptional start site is nitrogen regulated. Full length transcript is only produced during nitrogen starvation. [2] [4]
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References
See Help:References on how to add references
- ↑ Huang YC, et al. (2010) Intragenic transcription of a noncoding RNA modulates expression of ASP3 in budding yeast. RNA 16(11):2085-93 SGD PMID 20817754
- ↑ 2.0 2.1 Kim KW, et al. (1988) Asparaginase II of Saccharomyces cerevisiae. Characterization of the ASP3 gene. J Biol Chem 263(24):11948-53 SGD PMID 3042786
- ↑ Oliveira EM, et al. (2003) The role of the GATA factors Gln3p, Nil1p, Dal80p and the Ure2p on ASP3 regulation in Saccharomyces cerevisiae. Yeast 20(1):31-7 SGD PMID 12489124
- ↑ submitted by Evan Hurowitz on 2003-04-07
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