Difference between revisions of "YGL235W"

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-The wild type strain had only a small difference in doubling time when stressed with Hydroxyurea;YGL235W had about a 20 minute difference in doubling time when stressed with hydroxyurea, indicating that this gene most likely does not play a vital role in DNA replication.  
 
-The wild type strain had only a small difference in doubling time when stressed with Hydroxyurea;YGL235W had about a 20 minute difference in doubling time when stressed with hydroxyurea, indicating that this gene most likely does not play a vital role in DNA replication.  
 
[[file:HU_YGL235W.png|left]]
 
[[file:HU_YGL235W.png|left]]
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===Fermentation===
  
 
Fermentation protocol link [https://wiki.yeastgenome.org/index.php/UW-Stout/Fermentation]
 
Fermentation protocol link [https://wiki.yeastgenome.org/index.php/UW-Stout/Fermentation]

Revision as of 09:42, 5 May 2019

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Systematic name YGL235W
Gene name
Aliases
Feature type ORF, Uncharacterized
Coordinates Chr VII:55279..55815
Primary SGDID S000003204


Description of YGL235W: Putative protein of unknown function; potential Cdc28p substrate; null mutant displays increased resistance to antifungal agents gliotoxin, cycloheximide and H2O2[1][2]




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Protein Details

Protein Modification

Modification(s): Phosphorylation

Identified as an efficient substrate of Clb2-Cdk1-as1 in a screen of a proteomic GST-fusion library. [2] [3]


UW-Stout/Sensitivity To Nitrogen Starvation

Growth of YGL235W on synthetic defined media (SDC).
Growth of YFL064C on omission media that lacks nitrogen.
File:YGL235W revival plate.JPG
Growth of transferred BY4735 on Synthetic defined media.

Knocking out the YGL235Wseems to have no effect on growth after incubating for 5 days on the Nitrogen omitted media.


Ultraviolet Sensitivity

YGL235W uv light.jpg BY4735(wild) uv light.jpg

YGL235W is more sensitive than BY4735(wild) given that there is less colonizes present when under the same stress.

This gene is part of the UW-Stout Orphan Gene Project. Learn more here.

Growth Curve

ygl235w growth.png

In a BY4735 background, knocking out YGL235W seems to have a moderate effect on growth rate in log-phase. In this assay, the BY4735 strain's doubling time was 124 minutes, while the YGL235W knock-out strain's doubling time was 209 minutes.

image003.png

Methanol Sensitivity

The wild type had a doubling time of 160 min, the YGL235w had a doubling time of 160 min. The strain was sensitive to the methanol.

[1]

YGL235W Methanol Sensitivity.png

Stressing with Hydroxyurea

Hydroxyurea Protocol -The wild type strain had only a small difference in doubling time when stressed with Hydroxyurea;YGL235W had about a 20 minute difference in doubling time when stressed with hydroxyurea, indicating that this gene most likely does not play a vital role in DNA replication.

HU YGL235W.png

Fermentation

Fermentation protocol link [2] - There appears to be no major difference in fermentation rate. The lower final ethanol percentage could be a result of evaporation. If this experiment were to be carried out again then it should be done in an air tight container.

fer YGL235W.PNG


References

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  1. Chamilos G, et al. (2008) Genomewide Screening for Genes Associated with Gliotoxin Resistance and Sensitivity in Saccharomyces cerevisiae. Antimicrob Agents Chemother 52(4):1325-9 SGD PMID 18212113
  2. 2.0 2.1 Ubersax JA, et al. (2003) Targets of the cyclin-dependent kinase Cdk1. Nature 425(6960):859-64 SGD PMID 14574415 Cite error: Invalid <ref> tag; name "S000074306" defined multiple times with different content
  3. submitted by Jeff Ubersax on 2004-01-27

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