Difference between revisions of "YBL086C"

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Revision as of 11:36, 17 December 2019

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Systematic name YBL086C
Gene name
Aliases
Feature type ORF, Uncharacterized
Coordinates Chr II:62602..61202
Primary SGDID S000000182


Description of YBL086C: Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery[1]




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Community Commentary

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Growth Curve

YBL086C YPD.png

In a BY4735 background, knocking out YBL086C seems to have little or no effect on growth rate in log-phase. In this assay, the BY4735 strain's doubling time was 414 minutes, while the YAL061 knock-out strain's doubling time was 495 minutes. (These doubling times are the means of three experiments.)

Caffeine and Yeast Cells

megan21.png

This graph shows the growth curve with and without caffeine. It has the knockout strain and wild type yeast cells. The caffeine enhanced the growth in both wild type and knockout strain. The average doubling time between the three experiments for the knockout strand was 743.32 minutes. The caffeine also had a positive effect on the growth curve for the wild type with the average doubling time being 1245.02 minutes. The results were concluded from the wild type and knockout strand was with this amount of caffeine it leads to an increase in growth.

The protocol can be found at

Caffeine

yBL086cUV Exposure.png

This bar graph Shows that compared to a BY4735 background, Knocking out yBL086c seems to make the yeast more sensitive to UV light exposure.


Cycloheximides effect on YBL086C

Cycloheximide 3.png

As we can see form the results Tests 2-4 succeeded on cycloheximide and Test 1 was effected. Growth Models 1-3 are the Yeast strands not under distress.


Effect of 3% DMSO on YBL086C

Effect of 3% DMSO on YBL086C.png

The graph above shows the effect of 3% DMSO on YBL086C. From the data represented the average doubling rate for the YBL086C knockout strain without DMSO was 617 minutes. When DMSO is added the average doubling time increased to 976 minutes. This shows that 3% DMSO did add stress to this knockout strain. The average doubling time of WT:BY4735 without DMSO was 514 minutes. The average doubling rate for WT:BY4735 with DMSO was 1529 minutes. If we compare the average doubling rate of WT:BY4735 with DMSO to YBL086C with DMSO we can see that without the YBL086C gene the yeast was able to grow more quickly under DMSO induced stress.


Ethanol Tolerance for YBL086C

YBL086C ethonal.png

This graph shows the growth curve of ethanol tolerance in YBL086C. The unstressed lines represent YBL086C that was not treated with ethanol. If you examine the graph you will notice that the strands that were treated with ethanol grew more than the ones that weren't. The average doubling time for the stressed yeast was 1053.88 minutes. The average doubling time for the unstressed yeast was 971.64 minutes. The results show that YAL061 in ethanol leads to an increase in growth.


File:Wiki.png KO strand




Prednisone Effects on YBL086C

YBL086C.png

The graph above shows how dilutions P2 (30 µg/ml) and E2 (10% ethanol solution) impacted the growth rate of the knockout yeast strain YBL086C over 24 hours. The concentration did not double for test 3 of P2 for this experiment, so by taking only the first two test results, the doubling rate averages to around 1017.5 minutes for only ethanol. As for the Prednisone with ethanol, the doubling rate averages to around 907.5 minutes. Overall, ethanol decreased the rate of growth by almost 110 minutes. These results conclude that Prednisone promotes the growth of yeast cells without the gene YBL086C.

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References

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  1. Huh WK, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425(6959):686-91 SGD PMID 14562095

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