Difference between revisions of "Strains"

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(Strain Collections)
 
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Do you have comments or results or other observations to share about any of the various yeast strain collections?
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*Post them on the [https://community.alliancegenome.org/c/model-organism-yeast/strain-collections/242 Community Forum]!
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=Strain Backgrounds=
 
=Strain Backgrounds=
 
*View genotypes and descriptions of [[Commonly_used_strains|commonly used strains]].
 
*View genotypes and descriptions of [[Commonly_used_strains|commonly used strains]].
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*Table of [[Commonly_used_auxotrophic_markers|commonly used auxotrophic markers]], with sequence information where known.
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=Strain Collections=
  
=Stock Centers=
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*[https://www.thermofisher.com/us/en/home/references/protocols/proteins-expression-isolation-and-analysis/gfp-protocol/yeast-gfp-clone-collection.html Yeast-GFP Clone Collection] from Dr. Erin O'Shea and Dr. Jonathan Weissman at UCSF, consisting of C-terminal tagged open reading frames (ORFs).  These may be available from the [https://mayaschuldiner.wixsite.com/schuldinerlab/swat Schuldiner Lab SWAT].
*[http://www.atcc.org/ American Type Culture Collection] (ATCC) maintains yeast stocks and clones.
 
  
*[http://web.uni-frankfurt.de/fb15/mikro/euroscarf/ EUROSCARF], the EUROpean Saccharomyces Cerevisiae ARchive for Functional analysis, maintains a collection of systematic deletion strains [http://cgi.server.uni-frankfurt.de/fb15/rose/index.html searchable] by gene name.
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*[https://horizondiscovery.com/en/non-mammalian-research-tools/products/yeast-gst-tagged-orfs Yeast GST-Tagged Collection] for inducible overexpression of yeast ORFs, developed in the [http://sites.utoronto.ca/andrewslab/data.shtml  Andrews lab at the University of Toronto]. Hosted by [https://horizondiscovery.com/en Horizon].
  
*[http://www.ncyc.co.uk/ National Collection of Yeast Cultures (NCYC)] maintains over 3,100 non-pathogenic yeasts, including type strains, strains of general interest for education and research, strains of industrial importance, and genetically marked strains.
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*[http://yeastdeletion-sgtc.yeastgenome.org/downloads.html#strainsavail Yeast Knockout (YKO) Collection] from the [http://yeastdeletion-sgtc.yeastgenome.org/consortium.html <i>Saccharomyces</i> Genome Deletion Consortium].  
  
*[http://www.cabri.org/ Common Access to Biological Resources and Information] (CABRI) includes catalogs from European culture collections for yeast and other organisms.  
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*[https://horizondiscovery.com/en/non-mammalian-research-tools/products/yeast-tap-tagged-orfs Yeast-TAP Fusion Library] from Dr. Erin O'Shea and Dr. Jonathan Weissman at UCSF, containing open reading frames (ORFs) tagged with a high-affinity epitope and expressed from their natural chromosomal locations.  Hosted by [https://horizondiscovery.com/en Horizon].
  
*[http://www.addgene.org Addgene] is a non-profit plasmid repository that distributes many plasmids for yeast research. In particular, Addgene is distributing a collection of [http://www.addgene.org/yeast_gateway Yeast Advanced Gateway Destination Vectors] created by Dr. Susan Lindquist's laboratory.
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*[https://horizondiscovery.com/en/non-mammalian-research-tools/products/yeast-tet-promoters-hughes-ythc Yeast Tet-promoters Hughes Collection] containing 800 essential yeast genes for which expression is regulated by doxycycline. Hosted by [https://horizondiscovery.com/en Horizon].
  
*[http://yeast.lab.nig.ac.jp/nig/index_en.html Yeast Genetic Resource Center (YGRC)] maintains over 4,800 S. pombe strains and over 9,000 S. cerevisiae strains.
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*The Yeast Transposon Insertion Library Collection, derived by using mini-transposons (mTns) to mutagenize a yeast genomic DNA library, is available from the [http://snyderlab.stanford.edu/ Mike Snyder lab] at Stanford University. Please contact Minyi Shi (minyishi at stanford dot edu) with requests.
  
=Strain Collections=
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=Stock Centers=
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*[http://www.atcc.org/ American Type Culture Collection] (ATCC) maintains yeast stocks and clones.
  
*[http://clones.invitrogen.com/cloneinfo.php?clone=yeastgfp Yeast-GFP Clone Collection] from Dr. Erin O'Shea and Dr. Jonathan Weissman at UCSF, consisting of C-terminal tagged open reading frames (ORFs).  Hosted by [http://www.invitrogen.com Invitrogen].
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*[http://www.euroscarf.de EUROSCARF], the EUROpean Saccharomyces Cerevisiae ARchive for Functional analysis, maintains a collection of systematic deletion strains [http://cgi.server.uni-frankfurt.de/fb15/rose/index.html searchable] by gene name.
  
*[http://mp.invitrogen.com/products/YEXclns.php3 Yeast GST-fusion Collection] developed in [http://www.sciencemag.org/cgi/content/abstract/286/5442/1153 Eric Phizicky's] laboratory. A total of 6,144 individual yeast strains, each containing a plasmid expressing a different full-length yeast Open Reading Frame (ORF) fused to a glutathione S-transferase (GST). Hosted by [http://www.resgen.com/products/YEXclns.php3 ResGen Invitrogen].
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*[http://www.ncyc.co.uk/ National Collection of Yeast Cultures (NCYC)] maintains over 3,100 non-pathogenic yeasts, including type strains, strains of general interest for education and research, strains of industrial importance, and genetically marked strains.
  
*[http://www-sequence.stanford.edu/group/yeast_deletion_project/deletions3.html Yeast Knockout (YKO) Collection] from the [http://www-sequence.stanford.edu/group/yeast_deletion_project/member.html <i>Saccharomyces</i> Genome Deletion Consortium].
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*[http://www.cabri.org/ Common Access to Biological Resources and Information] (CABRI) includes catalogs from European culture collections for yeast and other organisms.  
**[http://www-sequence.stanford.edu/group/yeast_deletion_project/ykocpadd.html Submit] a comment to the Community Posting page.
 
**[http://www-sequence.stanford.edu/group/yeast_deletion_project/gb/ykocp.html Read] all comments.
 
  
*[http://www.openbiosystems.com/GeneExpression/Yeast/TAP/ Yeast-TAP Fusion Library] from Dr. Erin O'Shea and Dr. Jonathan Weissman at UCSF, containing open reading frames (ORFs) tagged with a high-affinity epitope and expressed from their natural chromosomal locations. Hosted by [http://www.openbiosystems.com Open Biosystems].
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*[http://www.addgene.org Addgene] is a non-profit plasmid repository that distributes many plasmids for yeast research. In particular, Addgene is distributing a collection of [http://www.addgene.org/yeast_gateway Yeast Advanced Gateway Destination Vectors] created by Dr. Susan Lindquist's laboratory.
  
*[http://www.openbiosystems.com/GeneExpression/Yeast/Tet-Promoters/ Yeast Tet-promoters Hughes Collection] containing 800 essential yeast genes for which expression is regulated by doxycycline. Hosted by [http://www.openbiosystems.com Open Biosystems].
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*[http://yeast.lab.nig.ac.jp/yeast/ Yeast Genetic Resource Center (YGRC)] maintains over 4,800 S. pombe strains and over 9,000 S. cerevisiae strains.
  
*[http://ygac.med.yale.edu/mtn/insertion_libraries.stm Yeast Transposon Insertion Library Collection], derived by using mini-transposons (mTns) to mutagenize a yeast genomic DNA library, from the [http://ygac.med.yale.edu/default.stm Yale Genome Analysis Center].
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*[http://www.dbvpg.unipg.it/ Industrial Yeasts Collection DBVPG]. The Industrial Yeasts Collection DBVPG, an academic biological resource centre (BRC) specialized in yeasts and yeast-like microorganisms, distributes strains and offers services to the international scientific community and to other private Institutions. DBVPG maintains over 6,000 yeast strains and over 300  yeast-like (Prototheca sp.) strains.

Latest revision as of 12:26, 16 November 2023

Do you have comments or results or other observations to share about any of the various yeast strain collections?

Strain Backgrounds

Strain Collections

  • Yeast-TAP Fusion Library from Dr. Erin O'Shea and Dr. Jonathan Weissman at UCSF, containing open reading frames (ORFs) tagged with a high-affinity epitope and expressed from their natural chromosomal locations. Hosted by Horizon.
  • The Yeast Transposon Insertion Library Collection, derived by using mini-transposons (mTns) to mutagenize a yeast genomic DNA library, is available from the Mike Snyder lab at Stanford University. Please contact Minyi Shi (minyishi at stanford dot edu) with requests.

Stock Centers

  • EUROSCARF, the EUROpean Saccharomyces Cerevisiae ARchive for Functional analysis, maintains a collection of systematic deletion strains searchable by gene name.
  • National Collection of Yeast Cultures (NCYC) maintains over 3,100 non-pathogenic yeasts, including type strains, strains of general interest for education and research, strains of industrial importance, and genetically marked strains.
  • Industrial Yeasts Collection DBVPG. The Industrial Yeasts Collection DBVPG, an academic biological resource centre (BRC) specialized in yeasts and yeast-like microorganisms, distributes strains and offers services to the international scientific community and to other private Institutions. DBVPG maintains over 6,000 yeast strains and over 300 yeast-like (Prototheca sp.) strains.