Difference between revisions of "Strains"
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=Strain Backgrounds= | =Strain Backgrounds= | ||
*View genotypes and descriptions of [[Commonly_used_strains|commonly used strains]]. | *View genotypes and descriptions of [[Commonly_used_strains|commonly used strains]]. | ||
+ | *View [http://gbrowse.princeton.edu/cgi-bin/gbrowse/yeast_strains_snps/ SNPs] in <i>S. cerevisiae</i> strains | ||
+ | *Table of [[Commonly_used_auxotrophic_markers|commonly used auxotrophic markers]], with sequence information where known. | ||
=Stock Centers= | =Stock Centers= | ||
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*[http://www.addgene.org Addgene] is a non-profit plasmid repository that distributes many plasmids for yeast research. In particular, Addgene is distributing a collection of [http://www.addgene.org/yeast_gateway Yeast Advanced Gateway Destination Vectors] created by Dr. Susan Lindquist's laboratory. | *[http://www.addgene.org Addgene] is a non-profit plasmid repository that distributes many plasmids for yeast research. In particular, Addgene is distributing a collection of [http://www.addgene.org/yeast_gateway Yeast Advanced Gateway Destination Vectors] created by Dr. Susan Lindquist's laboratory. | ||
− | *[http://yeast.lab.nig.ac.jp/ | + | *[http://yeast.lab.nig.ac.jp/yeast/ Yeast Genetic Resource Center (YGRC)] maintains over 4,800 S. pombe strains and over 9,000 S. cerevisiae strains. |
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+ | *[http://www.dbvpg.unipg.it/ Industrial Yeasts Collection DBVPG]. The Industrial Yeasts Collection DBVPG, an academic biological resource centre (BRC) specialized in yeasts and yeast-like microorganisms, distributes strains and offers services to the international scientific community and to other private Institutions. DBVPG maintains over 6,000 yeast strains and over 300 yeast-like (Prototheca sp. ) strains. | ||
=Strain Collections= | =Strain Collections= | ||
− | *[http://clones.invitrogen.com/cloneinfo.php?clone=yeastgfp Yeast-GFP Clone Collection] from Dr. Erin O'Shea and Dr. Jonathan Weissman at UCSF, consisting of C-terminal tagged open reading frames (ORFs). Hosted by [http://www.invitrogen.com Invitrogen] | + | *[http://clones.invitrogen.com/cloneinfo.php?clone=yeastgfp Yeast-GFP Clone Collection] from Dr. Erin O'Shea and Dr. Jonathan Weissman at UCSF, consisting of C-terminal tagged open reading frames (ORFs). Hosted by [http://www.invitrogen.com/site/us/en/home/brands/Invitrogen.html Invitrogen]. |
− | *[http://www. | + | *[http://www.thermoscientificbio.com/non-mammalian-cdna-and-orf/yeast-gst-tagged-orfs/ Yeast GST-Tagged Collection] for inducible overexpression of yeast ORFs, developed in the Andrews lab at the University of Toronto. Hosted by [http://www.thermoscientificbio.com/openbiosystems/?redirect=true Open Biosystems]. |
*[http://www-sequence.stanford.edu/group/yeast_deletion_project/deletions3.html Yeast Knockout (YKO) Collection] from the [http://www-sequence.stanford.edu/group/yeast_deletion_project/member.html <i>Saccharomyces</i> Genome Deletion Consortium]. | *[http://www-sequence.stanford.edu/group/yeast_deletion_project/deletions3.html Yeast Knockout (YKO) Collection] from the [http://www-sequence.stanford.edu/group/yeast_deletion_project/member.html <i>Saccharomyces</i> Genome Deletion Consortium]. | ||
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**[http://www-sequence.stanford.edu/group/yeast_deletion_project/gb/ykocp.html Read] all comments. | **[http://www-sequence.stanford.edu/group/yeast_deletion_project/gb/ykocp.html Read] all comments. | ||
− | *[http://www. | + | *[http://www.thermoscientificbio.com/non-mammalian-cdna-and-orf/yeast-tap-tagged-orfs/ Yeast-TAP Fusion Library] from Dr. Erin O'Shea and Dr. Jonathan Weissman at UCSF, containing open reading frames (ORFs) tagged with a high-affinity epitope and expressed from their natural chromosomal locations. Hosted by [http://www.thermoscientificbio.com/openbiosystems/?redirect=true Open Biosystems]. |
*[http://www.openbiosystems.com/GeneExpression/Yeast/Tet-Promoters/ Yeast Tet-promoters Hughes Collection] containing 800 essential yeast genes for which expression is regulated by doxycycline. Hosted by [http://www.openbiosystems.com Open Biosystems]. | *[http://www.openbiosystems.com/GeneExpression/Yeast/Tet-Promoters/ Yeast Tet-promoters Hughes Collection] containing 800 essential yeast genes for which expression is regulated by doxycycline. Hosted by [http://www.openbiosystems.com Open Biosystems]. | ||
− | * | + | *The Yeast Transposon Insertion Library Collection, derived by using mini-transposons (mTns) to mutagenize a yeast genomic DNA library, is available from the [http://snyderlab.stanford.edu/ Mike Snyder lab] at Stanford University. Please contact Minyi Shi (minyishi at stanford dot edu) with requests. |
Revision as of 10:27, 5 May 2017
Strain Backgrounds
- View genotypes and descriptions of commonly used strains.
- View SNPs in S. cerevisiae strains
- Table of commonly used auxotrophic markers, with sequence information where known.
Stock Centers
- American Type Culture Collection (ATCC) maintains yeast stocks and clones.
- EUROSCARF, the EUROpean Saccharomyces Cerevisiae ARchive for Functional analysis, maintains a collection of systematic deletion strains searchable by gene name.
- National Collection of Yeast Cultures (NCYC) maintains over 3,100 non-pathogenic yeasts, including type strains, strains of general interest for education and research, strains of industrial importance, and genetically marked strains.
- Common Access to Biological Resources and Information (CABRI) includes catalogs from European culture collections for yeast and other organisms.
- Addgene is a non-profit plasmid repository that distributes many plasmids for yeast research. In particular, Addgene is distributing a collection of Yeast Advanced Gateway Destination Vectors created by Dr. Susan Lindquist's laboratory.
- Yeast Genetic Resource Center (YGRC) maintains over 4,800 S. pombe strains and over 9,000 S. cerevisiae strains.
- Industrial Yeasts Collection DBVPG. The Industrial Yeasts Collection DBVPG, an academic biological resource centre (BRC) specialized in yeasts and yeast-like microorganisms, distributes strains and offers services to the international scientific community and to other private Institutions. DBVPG maintains over 6,000 yeast strains and over 300 yeast-like (Prototheca sp. ) strains.
Strain Collections
- Yeast-GFP Clone Collection from Dr. Erin O'Shea and Dr. Jonathan Weissman at UCSF, consisting of C-terminal tagged open reading frames (ORFs). Hosted by Invitrogen.
- Yeast GST-Tagged Collection for inducible overexpression of yeast ORFs, developed in the Andrews lab at the University of Toronto. Hosted by Open Biosystems.
- Yeast-TAP Fusion Library from Dr. Erin O'Shea and Dr. Jonathan Weissman at UCSF, containing open reading frames (ORFs) tagged with a high-affinity epitope and expressed from their natural chromosomal locations. Hosted by Open Biosystems.
- Yeast Tet-promoters Hughes Collection containing 800 essential yeast genes for which expression is regulated by doxycycline. Hosted by Open Biosystems.
- The Yeast Transposon Insertion Library Collection, derived by using mini-transposons (mTns) to mutagenize a yeast genomic DNA library, is available from the Mike Snyder lab at Stanford University. Please contact Minyi Shi (minyishi at stanford dot edu) with requests.