https://wiki.yeastgenome.org/index.php?title=SGD_Newsletter,_Fall_2021&feed=atom&action=history
SGD Newsletter, Fall 2021 - Revision history
2024-03-29T14:45:23Z
Revision history for this page on the wiki
MediaWiki 1.31.14
https://wiki.yeastgenome.org/index.php?title=SGD_Newsletter,_Fall_2021&diff=403985&oldid=prev
Stacia: /* Nomenclature Updates */
2021-12-16T15:42:22Z
<p><span dir="auto"><span class="autocomment">Nomenclature Updates</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 15:42, 16 December 2021</td>
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<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>===New systematic nomenclature for yeast genes not in the reference genome===</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>===New systematic nomenclature for yeast genes not in the reference genome===</div></td></tr>
</table>
Stacia
https://wiki.yeastgenome.org/index.php?title=SGD_Newsletter,_Fall_2021&diff=403739&oldid=prev
Jodils at 17:24, 14 December 2021
2021-12-14T17:24:35Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 17:24, 14 December 2021</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>===New <del class="diffchange diffchange-inline">Systematic Nomenclature </del>for yeast genes not in the reference genome===</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>===New <ins class="diffchange diffchange-inline">systematic nomenclature </ins>for yeast genes not in the reference genome===</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>For many years, a widely adopted systematic nomenclature has existed for yeast protein-coding genes, or ORFs, as many yeast researchers call them.  Readers of the [https://wiki.yeastgenome.org/index.php/SGD_Newsletter,_Spring_2021 last SGD newsletter] will recall that, earlier this year, SGD adopted a new systematic nomenclature for the [https://www.yeastgenome.org/search?q=YNC&category=locus entire annotated complement of ncRNAs].   </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>For many years, a widely adopted systematic nomenclature has existed for yeast protein-coding genes, or ORFs, as many yeast researchers call them.  Readers of the [https://wiki.yeastgenome.org/index.php/SGD_Newsletter,_Spring_2021 last SGD newsletter] will recall that, earlier this year, SGD adopted a new systematic nomenclature for the [https://www.yeastgenome.org/search?q=YNC&category=locus entire annotated complement of ncRNAs].   </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
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Jodils
https://wiki.yeastgenome.org/index.php?title=SGD_Newsletter,_Fall_2021&diff=403738&oldid=prev
Stacia: /* New systematic nomenclature for yeast genes not in the reference genome */
2021-12-14T17:18:49Z
<p><span dir="auto"><span class="autocomment">New systematic nomenclature for yeast genes not in the reference genome</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 17:18, 14 December 2021</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>===New <del class="diffchange diffchange-inline">systematic nomenclature </del>for yeast genes not in the reference genome===</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>===New <ins class="diffchange diffchange-inline">Systematic Nomenclature </ins>for yeast genes not in the reference genome===</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>For many years, a widely adopted systematic nomenclature has existed for yeast protein-coding genes, or ORFs, as many yeast researchers call them.  Readers of the [https://wiki.yeastgenome.org/index.php/SGD_Newsletter,_Spring_2021 last SGD newsletter] will recall that, earlier this year, SGD adopted a new systematic nomenclature for the [https://www.yeastgenome.org/search?q=YNC&category=locus entire annotated complement of ncRNAs].   </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>For many years, a widely adopted systematic nomenclature has existed for yeast protein-coding genes, or ORFs, as many yeast researchers call them.  Readers of the [https://wiki.yeastgenome.org/index.php/SGD_Newsletter,_Spring_2021 last SGD newsletter] will recall that, earlier this year, SGD adopted a new systematic nomenclature for the [https://www.yeastgenome.org/search?q=YNC&category=locus entire annotated complement of ncRNAs].   </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
</table>
Stacia
https://wiki.yeastgenome.org/index.php?title=SGD_Newsletter,_Fall_2021&diff=403737&oldid=prev
Jodils: /* Alliance of Genome Resources - recent release */
2021-12-14T17:15:54Z
<p><span dir="auto"><span class="autocomment">Alliance of Genome Resources - recent release</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 17:15, 14 December 2021</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Pre-generated [https://yeastmine.yeastgenome.org/yeastmine/template.do?name=Gene_OMIM_Disease&scope=all queries] for human homolog(s) of your favorite yeast gene and their corresponding disease associations remain largely unchanged. You can begin with your favorite human gene or disease keyword and retrieve the yeast counterparts of the relevant gene(s).  As an example, you can search for the ''S. cerevisiae'' homologs of all human genes associated with disorders that contain the keyword “diabetes” ([https://yeastmine.yeastgenome.org/yeastmine/template.do?name=Disease_Human_Yeast&scope=all view search]). The results table provides identifiers and standard names for the yeast and human genes, OMIM gene and disease identifiers and name, as well as predictive algorithm sources and scores.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Pre-generated [https://yeastmine.yeastgenome.org/yeastmine/template.do?name=Gene_OMIM_Disease&scope=all queries] for human homolog(s) of your favorite yeast gene and their corresponding disease associations remain largely unchanged. You can begin with your favorite human gene or disease keyword and retrieve the yeast counterparts of the relevant gene(s).  As an example, you can search for the ''S. cerevisiae'' homologs of all human genes associated with disorders that contain the keyword “diabetes” ([https://yeastmine.yeastgenome.org/yeastmine/template.do?name=Disease_Human_Yeast&scope=all view search]). The results table provides identifiers and standard names for the yeast and human genes, OMIM gene and disease identifiers and name, as well as predictive algorithm sources and scores.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>==Alliance of Genome Resources - <del class="diffchange diffchange-inline">recent release</del>==</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>==Alliance of Genome Resources - <ins class="diffchange diffchange-inline">Recent Release</ins>==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:alliance_logo.png|link=https://www.alliancegenome.org/ |thumb|left|upright=.5]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:alliance_logo.png|link=https://www.alliancegenome.org/ |thumb|left|upright=.5]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The [https://www.alliancegenome.org/ Alliance of Genome Resources], a collaborative effort from SGD and other model organism databases (MOD), released [https://www.alliancegenome.org/release-notes version 4.1] this past August. Notable improvements and new features included:</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The [https://www.alliancegenome.org/ Alliance of Genome Resources], a collaborative effort from SGD and other model organism databases (MOD), released [https://www.alliancegenome.org/release-notes version 4.1] this past August. Notable improvements and new features included:</div></td></tr>
</table>
Jodils
https://wiki.yeastgenome.org/index.php?title=SGD_Newsletter,_Fall_2021&diff=403736&oldid=prev
Jodils: /* DIOPT Orthologs and new queries in YeastMine */
2021-12-14T17:15:32Z
<p><span dir="auto"><span class="autocomment">DIOPT Orthologs and new queries in YeastMine</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 17:15, 14 December 2021</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*Whether or not a family is identified, the comparison will yield clues to protein function to help design the next experiments.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*Whether or not a family is identified, the comparison will yield clues to protein function to help design the next experiments.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>==DIOPT Orthologs and <del class="diffchange diffchange-inline">new queries </del>in YeastMine ==</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>==DIOPT Orthologs and <ins class="diffchange diffchange-inline">New Queries </ins>in YeastMine ==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:DIOPT-logo-integrative trans.png|thumb|left|upright=.5|link=https://www.flyrnai.org/diopt]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:DIOPT-logo-integrative trans.png|thumb|left|upright=.5|link=https://www.flyrnai.org/diopt]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>We recently replaced HomoloGene, Ensembl, TreeFam and PANTHER homology datasets in YeastMine with homology data from [https://www.flyrnai.org/diopt DIOPT (DRSC integrative ortholog prediction tool)]. DIOPT integrates orthology predictions from multiple sources, including HomoloGene, Ensembl, TreeFam, and PANTHER. Using the [https://yeastmine.yeastgenome.org/yeastmine/template.do?name=Gene_Homologs&scope=all Gene->Non-fungal and S. cerevisiae Homologs] pre-generated query, you can look for DIOPT homologs for a single or multiple yeast genes. The results table provides identifiers and standard names for the yeast and homologous genes, as well as organism and predictive score information.  As with other YeastMine templates, results can be saved as lists and analyzed further.<br></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>We recently replaced HomoloGene, Ensembl, TreeFam and PANTHER homology datasets in YeastMine with homology data from [https://www.flyrnai.org/diopt DIOPT (DRSC integrative ortholog prediction tool)]. DIOPT integrates orthology predictions from multiple sources, including HomoloGene, Ensembl, TreeFam, and PANTHER. Using the [https://yeastmine.yeastgenome.org/yeastmine/template.do?name=Gene_Homologs&scope=all Gene->Non-fungal and S. cerevisiae Homologs] pre-generated query, you can look for DIOPT homologs for a single or multiple yeast genes. The results table provides identifiers and standard names for the yeast and homologous genes, as well as organism and predictive score information.  As with other YeastMine templates, results can be saved as lists and analyzed further.<br></div></td></tr>
</table>
Jodils
https://wiki.yeastgenome.org/index.php?title=SGD_Newsletter,_Fall_2021&diff=403735&oldid=prev
Jodils: /* New Systematic Nomenclature for yeast genes not in the reference genome */
2021-12-14T17:15:10Z
<p><span dir="auto"><span class="autocomment">New Systematic Nomenclature for yeast genes not in the reference genome</span></span></p>
<table class="diff diff-contentalign-left" data-mw="interface">
<col class="diff-marker" />
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<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 17:15, 14 December 2021</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l40" >Line 40:</td>
<td colspan="2" class="diff-lineno">Line 40:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>===New <del class="diffchange diffchange-inline">Systematic Nomenclature </del>for yeast genes not in the reference genome===</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>===New <ins class="diffchange diffchange-inline">systematic nomenclature </ins>for yeast genes not in the reference genome===</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>For many years, a widely adopted systematic nomenclature has existed for yeast protein-coding genes, or ORFs, as many yeast researchers call them.  Readers of the [https://wiki.yeastgenome.org/index.php/SGD_Newsletter,_Spring_2021 last SGD newsletter] will recall that, earlier this year, SGD adopted a new systematic nomenclature for the [https://www.yeastgenome.org/search?q=YNC&category=locus entire annotated complement of ncRNAs].   </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>For many years, a widely adopted systematic nomenclature has existed for yeast protein-coding genes, or ORFs, as many yeast researchers call them.  Readers of the [https://wiki.yeastgenome.org/index.php/SGD_Newsletter,_Spring_2021 last SGD newsletter] will recall that, earlier this year, SGD adopted a new systematic nomenclature for the [https://www.yeastgenome.org/search?q=YNC&category=locus entire annotated complement of ncRNAs].   </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
</table>
Jodils
https://wiki.yeastgenome.org/index.php?title=SGD_Newsletter,_Fall_2021&diff=403734&oldid=prev
Stacia: /* Alliance of Genome Resources - latest release */
2021-12-14T16:53:59Z
<p><span dir="auto"><span class="autocomment">Alliance of Genome Resources - latest release</span></span></p>
<table class="diff diff-contentalign-left" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 16:53, 14 December 2021</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l68" >Line 68:</td>
<td colspan="2" class="diff-lineno">Line 68:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Pre-generated [https://yeastmine.yeastgenome.org/yeastmine/template.do?name=Gene_OMIM_Disease&scope=all queries] for human homolog(s) of your favorite yeast gene and their corresponding disease associations remain largely unchanged. You can begin with your favorite human gene or disease keyword and retrieve the yeast counterparts of the relevant gene(s).  As an example, you can search for the ''S. cerevisiae'' homologs of all human genes associated with disorders that contain the keyword “diabetes” ([https://yeastmine.yeastgenome.org/yeastmine/template.do?name=Disease_Human_Yeast&scope=all view search]). The results table provides identifiers and standard names for the yeast and human genes, OMIM gene and disease identifiers and name, as well as predictive algorithm sources and scores.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Pre-generated [https://yeastmine.yeastgenome.org/yeastmine/template.do?name=Gene_OMIM_Disease&scope=all queries] for human homolog(s) of your favorite yeast gene and their corresponding disease associations remain largely unchanged. You can begin with your favorite human gene or disease keyword and retrieve the yeast counterparts of the relevant gene(s).  As an example, you can search for the ''S. cerevisiae'' homologs of all human genes associated with disorders that contain the keyword “diabetes” ([https://yeastmine.yeastgenome.org/yeastmine/template.do?name=Disease_Human_Yeast&scope=all view search]). The results table provides identifiers and standard names for the yeast and human genes, OMIM gene and disease identifiers and name, as well as predictive algorithm sources and scores.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>==Alliance of Genome Resources - <del class="diffchange diffchange-inline">latest </del>release==</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>==Alliance of Genome Resources - <ins class="diffchange diffchange-inline">recent </ins>release==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:alliance_logo.png|link=https://www.alliancegenome.org/ |thumb|left|upright=.5]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:alliance_logo.png|link=https://www.alliancegenome.org/ |thumb|left|upright=.5]]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>The [https://www.alliancegenome.org/ Alliance of Genome Resources], a collaborative effort from SGD and other model organism databases (MOD), released [https://www.alliancegenome.org/release-notes version 4.1] this past August. Notable improvements and new features <del class="diffchange diffchange-inline">include</del>:</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>The [https://www.alliancegenome.org/ Alliance of Genome Resources], a collaborative effort from SGD and other model organism databases (MOD), released [https://www.alliancegenome.org/release-notes version 4.1] this past August. Notable improvements and new features <ins class="diffchange diffchange-inline">included</ins>:</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*Human and model organism high throughput (HTP) variant data</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*Human and model organism high throughput (HTP) variant data</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**Human variants are imported from Ensembl</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**Human variants are imported from Ensembl</div></td></tr>
</table>
Stacia
https://wiki.yeastgenome.org/index.php?title=SGD_Newsletter,_Fall_2021&diff=403733&oldid=prev
Suzia: /* DIOPT Orthologs and new queries in YeastMine */
2021-12-14T15:59:56Z
<p><span dir="auto"><span class="autocomment">DIOPT Orthologs and new queries in YeastMine</span></span></p>
<table class="diff diff-contentalign-left" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 15:59, 14 December 2021</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l64" >Line 64:</td>
<td colspan="2" class="diff-lineno">Line 64:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==DIOPT Orthologs and new queries in YeastMine ==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==DIOPT Orthologs and new queries in YeastMine ==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:DIOPT-logo-integrative trans.png|thumb|left|upright=.5|link=https://www.flyrnai.org/diopt]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:DIOPT-logo-integrative trans.png|thumb|left|upright=.5|link=https://www.flyrnai.org/diopt]]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>We recently replaced HomoloGene, Ensembl, TreeFam and <del class="diffchange diffchange-inline">Panther </del>homology datasets in YeastMine with homology data from [https://www.flyrnai.org/diopt DIOPT (DRSC integrative ortholog prediction tool)]. DIOPT integrates orthology predictions from multiple sources, including HomoloGene, Ensembl, TreeFam, and <del class="diffchange diffchange-inline">Panther</del>. Using the [https://yeastmine.yeastgenome.org/yeastmine/template.do?name=Gene_Homologs&scope=all Gene->Non-fungal and S. cerevisiae Homologs] pre-generated query, you can look for DIOPT homologs for a single or multiple yeast genes. The results table provides identifiers and standard names for the yeast and homologous genes, as well as organism and predictive score information.  As with other YeastMine templates, results can be saved as lists and analyzed further.<br></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>We recently replaced HomoloGene, Ensembl, TreeFam and <ins class="diffchange diffchange-inline">PANTHER </ins>homology datasets in YeastMine with homology data from [https://www.flyrnai.org/diopt DIOPT (DRSC integrative ortholog prediction tool)]. DIOPT integrates orthology predictions from multiple sources, including HomoloGene, Ensembl, TreeFam, and <ins class="diffchange diffchange-inline">PANTHER</ins>. Using the [https://yeastmine.yeastgenome.org/yeastmine/template.do?name=Gene_Homologs&scope=all Gene->Non-fungal and S. cerevisiae Homologs] pre-generated query, you can look for DIOPT homologs for a single or multiple yeast genes. The results table provides identifiers and standard names for the yeast and homologous genes, as well as organism and predictive score information.  As with other YeastMine templates, results can be saved as lists and analyzed further.<br></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Pre-generated [https://yeastmine.yeastgenome.org/yeastmine/template.do?name=Gene_OMIM_Disease&scope=all queries] for human homolog(s) of your favorite yeast gene and their corresponding disease associations remain largely unchanged. You can begin with your favorite human gene or disease keyword and retrieve the yeast counterparts of the relevant gene(s).  As an example, you can search for the ''S. cerevisiae'' homologs of all human genes associated with disorders that contain the keyword “diabetes” ([https://yeastmine.yeastgenome.org/yeastmine/template.do?name=Disease_Human_Yeast&scope=all view search]). The results table provides identifiers and standard names for the yeast and human genes, OMIM gene and disease identifiers and name, as well as predictive algorithm sources and scores.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Pre-generated [https://yeastmine.yeastgenome.org/yeastmine/template.do?name=Gene_OMIM_Disease&scope=all queries] for human homolog(s) of your favorite yeast gene and their corresponding disease associations remain largely unchanged. You can begin with your favorite human gene or disease keyword and retrieve the yeast counterparts of the relevant gene(s).  As an example, you can search for the ''S. cerevisiae'' homologs of all human genes associated with disorders that contain the keyword “diabetes” ([https://yeastmine.yeastgenome.org/yeastmine/template.do?name=Disease_Human_Yeast&scope=all view search]). The results table provides identifiers and standard names for the yeast and human genes, OMIM gene and disease identifiers and name, as well as predictive algorithm sources and scores.</div></td></tr>
</table>
Suzia
https://wiki.yeastgenome.org/index.php?title=SGD_Newsletter,_Fall_2021&diff=403732&oldid=prev
Stacia: /* DIOPT Orthologs and new queries in YeastMine */
2021-12-14T15:54:00Z
<p><span dir="auto"><span class="autocomment">DIOPT Orthologs and new queries in YeastMine</span></span></p>
<table class="diff diff-contentalign-left" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 15:54, 14 December 2021</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l63" >Line 63:</td>
<td colspan="2" class="diff-lineno">Line 63:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==DIOPT Orthologs and new queries in YeastMine ==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==DIOPT Orthologs and new queries in YeastMine ==</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[File:DIOPT-logo-integrative trans.png|thumb|left|upright=.<del class="diffchange diffchange-inline">35</del>|link=https://www.flyrnai.org/diopt]]</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[File:DIOPT-logo-integrative trans.png|thumb|left|upright=.<ins class="diffchange diffchange-inline">5</ins>|link=https://www.flyrnai.org/diopt]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>We recently replaced HomoloGene, Ensembl, TreeFam and Panther homology datasets in YeastMine with homology data from [https://www.flyrnai.org/diopt DIOPT (DRSC integrative ortholog prediction tool)]. DIOPT integrates orthology predictions from multiple sources, including HomoloGene, Ensembl, TreeFam, and Panther. Using the [https://yeastmine.yeastgenome.org/yeastmine/template.do?name=Gene_Homologs&scope=all Gene->Non-fungal and S. cerevisiae Homologs] pre-generated query, you can look for DIOPT homologs for a single or multiple yeast genes. The results table provides identifiers and standard names for the yeast and homologous genes, as well as organism and predictive score information.  As with other YeastMine templates, results can be saved as lists and analyzed further.<br></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>We recently replaced HomoloGene, Ensembl, TreeFam and Panther homology datasets in YeastMine with homology data from [https://www.flyrnai.org/diopt DIOPT (DRSC integrative ortholog prediction tool)]. DIOPT integrates orthology predictions from multiple sources, including HomoloGene, Ensembl, TreeFam, and Panther. Using the [https://yeastmine.yeastgenome.org/yeastmine/template.do?name=Gene_Homologs&scope=all Gene->Non-fungal and S. cerevisiae Homologs] pre-generated query, you can look for DIOPT homologs for a single or multiple yeast genes. The results table provides identifiers and standard names for the yeast and homologous genes, as well as organism and predictive score information.  As with other YeastMine templates, results can be saved as lists and analyzed further.<br></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
</table>
Stacia
https://wiki.yeastgenome.org/index.php?title=SGD_Newsletter,_Fall_2021&diff=403731&oldid=prev
Stacia: /* DIOPT Orthologs and new queries in YeastMine */
2021-12-14T15:53:44Z
<p><span dir="auto"><span class="autocomment">DIOPT Orthologs and new queries in YeastMine</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 15:53, 14 December 2021</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==DIOPT Orthologs and new queries in YeastMine ==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==DIOPT Orthologs and new queries in YeastMine ==</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">[[File:DIOPT-logo-integrative trans.png|thumb|left|upright=.35|link=https://www.flyrnai.org/diopt]]</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>We recently replaced HomoloGene, Ensembl, TreeFam and Panther homology datasets in YeastMine with homology data from [https://www.flyrnai.org/diopt DIOPT (DRSC integrative ortholog prediction tool)]. DIOPT integrates orthology predictions from multiple sources, including HomoloGene, Ensembl, TreeFam, and Panther. Using the [https://yeastmine.yeastgenome.org/yeastmine/template.do?name=Gene_Homologs&scope=all Gene->Non-fungal and S. cerevisiae Homologs] pre-generated query, you can look for DIOPT homologs for a single or multiple yeast genes. The results table provides identifiers and standard names for the yeast and homologous genes, as well as organism and predictive score information.  As with other YeastMine templates, results can be saved as lists and analyzed further.<br></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>We recently replaced HomoloGene, Ensembl, TreeFam and Panther homology datasets in YeastMine with homology data from [https://www.flyrnai.org/diopt DIOPT (DRSC integrative ortholog prediction tool)]. DIOPT integrates orthology predictions from multiple sources, including HomoloGene, Ensembl, TreeFam, and Panther. Using the [https://yeastmine.yeastgenome.org/yeastmine/template.do?name=Gene_Homologs&scope=all Gene->Non-fungal and S. cerevisiae Homologs] pre-generated query, you can look for DIOPT homologs for a single or multiple yeast genes. The results table provides identifiers and standard names for the yeast and homologous genes, as well as organism and predictive score information.  As with other YeastMine templates, results can be saved as lists and analyzed further.<br></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
</table>
Stacia