Difference between revisions of "Details of 2021 Reference Genome Annotation Update R64.3"
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{| border="1" style="border-collapse:collapse; width:90%" cellpadding="4" | {| border="1" style="border-collapse:collapse; width:90%" cellpadding="4" | ||
|- | |- | ||
| + | ! style="background: #D8D8D8" | Chromosome | ||
! style="background: #D8D8D8" | Feature | ! style="background: #D8D8D8" | Feature | ||
! style="background: #D8D8D8" | Description of change | ! style="background: #D8D8D8" | Description of change | ||
! style="background: #D8D8D8" | Reference | ! style="background: #D8D8D8" | Reference | ||
|- | |- | ||
| − | |GAL10 ncRNA | + | |II |
| − | | | + | |YNCB0008W aka GAL10-ncRNA |
| − | | | + | |New lncRNA added to genome annotation |
| + | |PMID:19061643 | PMID:19407817 | PMID: 22226051 | ||
|- | |- | ||
| − | |TBRT | + | |II |
| − | | | + | |YNCB0014W aka TBRT/XUT_2F-154 |
| − | | | + | |New lncRNA |
| + | |PMID:32081726 | ||
|- | |- | ||
| − | |RE | + | |III |
| − | | | + | |RE/RE301 |
| − | | | + | |New recombination enhancer |
| + | |PMID:8861911 | ||
|- | |- | ||
| + | |V | ||
|YELWdelta27 | |YELWdelta27 | ||
| − | | | + | |New Ty1 LTR |
| − | | | + | |PMID:29320491 |
|- | |- | ||
| + | |V | ||
|HPA3/YEL066W | |HPA3/YEL066W | ||
| − | | | + | |Moved translation start to Met19 |
| − | | | + | old coordinates: 26667..27206 |
| + | new coordinates: 26721..27206 | ||
| + | |PMID: 23775086 | ||
|- | |- | ||
| + | |VII | ||
|OTO1/YGR227C-A | |OTO1/YGR227C-A | ||
| − | | | + | |New ORF |
| − | | | + | |PMID: 25781884 |
|- | |- | ||
| | | | ||
Revision as of 16:30, 22 April 2021
The S. cerevisiae strain S288C reference genome annotation was updated in its first major update since 2014. The new genome annotation is release R64.3.1, dated 2021-04-22. Note that the genome sequence itself was not altered in any way.
| Chromosome | Feature | Description of change | Reference |
|---|---|---|---|
| II | YNCB0008W aka GAL10-ncRNA | New lncRNA added to genome annotation | PMID:19407817 | PMID: 22226051 |
| II | YNCB0014W aka TBRT/XUT_2F-154 | New lncRNA | PMID:32081726 |
| III | RE/RE301 | New recombination enhancer | PMID:8861911 |
| V | YELWdelta27 | New Ty1 LTR | PMID:29320491 |
| V | HPA3/YEL066W | Moved translation start to Met19
old coordinates: 26667..27206 new coordinates: 26721..27206 |
PMID: 23775086 |
| VII | OTO1/YGR227C-A | New ORF | PMID: 25781884 |
