Difference between revisions of "Chromosome I History"

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(Sequence Changes)
 
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This page lists all sequence and annotation changes that have been made to the Chromosome I systematic reference sequence since its intial release on 1996-07-31.
 +
*The sequence of Chromosome I has been updated '''115''' times, affecting '''55''' features. <br>
 +
*The annotation of Chromosome I has been updated '''25''' times, affecting '''39''' features. <br>
 +
Current and past versions can be obtained from SGD's [https://www.yeastgenome.org/downloads Download site].
 +
 +
__FORCETOC__
 +
 
=Sequence Changes=
 
=Sequence Changes=
{| class="wikitable" style="border-spacing: 2px; border: 1px solid darkgray;"
+
 
 +
{| border="1" style="border-collapse:collapse; width:90%" cellpadding="6"
 
! Date  !! Affected Features !! Start Coordinate of Change !! End Coordinate of Change !! Type of Change !! Old Sequence !! New Sequence
 
! Date  !! Affected Features !! Start Coordinate of Change !! End Coordinate of Change !! Type of Change !! Old Sequence !! New Sequence
 
|-
 
|-
|2011-02-03||[https://www.yeastgenome.org/locus/YAL013W YAL013W]||130485||130486||Deletion||GT||
+
| 2011-02-03
 +
| [https://www.yeastgenome.org/locus/YAL013W YAL013W]
 +
| 130485
 +
| 130486
 +
| Deletion
 +
| GT
 +
|  
 
|-
 
|-
 
| || colspan="6" |Two nucleotides were deleted near the 3' end of ORF DEP1/[https://www.yeastgenome.org/locus/YAL013W YAL013W], altering its coding sequence. The start and most of the reading frame remain the same, but the C-terminus has changed and the annotated protein is now 15 amino acids shorter.
 
| || colspan="6" |Two nucleotides were deleted near the 3' end of ORF DEP1/[https://www.yeastgenome.org/locus/YAL013W YAL013W], altering its coding sequence. The start and most of the reading frame remain the same, but the C-terminus has changed and the annotated protein is now 15 amino acids shorter.
Line 9: Line 23:
 
               |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
 
               |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
 
Old    130446  AGACTCCGAAATCAACGACGACTTCCACCAGTGGGCCCAGTGTGACCGCCACACTGGACC  130505</pre>
 
Old    130446  AGACTCCGAAATCAACGACGACTTCCACCAGTGGGCCCAGTGTGACCGCCACACTGGACC  130505</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAR019W-A YAR019W-A]||175305||175305||Insertion||||C
+
|- style="height:30px; width:30px; text-align:center;"
 +
| 2011-02-03
 +
| [https://www.yeastgenome.org/locus/YAR019W-A YAR019W-A]
 +
| 175305
 +
| 175305
 +
| Insertion
 +
|  
 +
| C
 
|-
 
|-
 
| || colspan="6" |A single C nucleotide was inserted very near the 3' end of ORF [https://www.yeastgenome.org/locus/YAR019W-A YAR019W-A], altering its coding sequence. The start and most of the reading frame remain the same, but the C-terminus has changed and the annotated protein is now 4 amino acids shorter.
 
| || colspan="6" |A single C nucleotide was inserted very near the 3' end of ORF [https://www.yeastgenome.org/locus/YAR019W-A YAR019W-A], altering its coding sequence. The start and most of the reading frame remain the same, but the C-terminus has changed and the annotated protein is now 4 amino acids shorter.
Line 17: Line 38:
 
               ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
 
               ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
 
Old    175293  GGCACAGCAAAGT-CGCACAGAGCACTACAGTATAGCATAGAGTGCTAATGAGTTGATAG  175351</pre>
 
Old    175293  GGCACAGCAAAGT-CGCACAGAGCACTACAGTATAGCATAGAGTGCTAATGAGTTGATAG  175351</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAL064W YAL064W]||21531||21531||Insertion||||A
+
|- style="height:30px; width:30px; text-align:center;"
 +
| 2011-02-03
 +
| [https://www.yeastgenome.org/locus/YAL064W YAL064W]
 +
| 21531
 +
| 21531
 +
| Insertion
 +
|  
 +
| A
 
|-
 
|-
 
| || colspan="6" |A single A nucleotide was inserted within ORF [https://www.yeastgenome.org/locus/YAL064W YAL064W], near its 5' end, moving the start codon out of frame with the rest of the protein. The C-terminus and majority of the reading frame remain the same, but the N-terminus has changed and the annotated protein is now 14 amino acids shorter.
 
| || colspan="6" |A single A nucleotide was inserted within ORF [https://www.yeastgenome.org/locus/YAL064W YAL064W], near its 5' end, moving the start codon out of frame with the rest of the protein. The C-terminus and majority of the reading frame remain the same, but the N-terminus has changed and the annotated protein is now 14 amino acids shorter.
Line 25: Line 53:
 
               |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
 
               |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
 
Old    21490  CTATCGATGTGTATACAAACGTACTTCAAATAAGCAATGCGA-TATACTGCAACTTTTCG  21548</pre>
 
Old    21490  CTATCGATGTGTATACAAACGTACTTCAAATAAGCAATGCGA-TATACTGCAACTTTTCG  21548</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAR014C YAR014C]||167048||167048||Substitution||G||C
+
|- style="height:30px; width:30px; text-align:center;"
|-
+
| rowspan="9"| 2011-02-03
| || ||167084||167084||Insertion||||C
+
| rowspan="9"| [https://www.yeastgenome.org/locus/YAR014C YAR014C]
|-
+
| 167048
| || ||167113||167113||Insertion||||T
+
| 167048
|-
+
| Substitution
| || ||167133||167133||Insertion||||A
+
| G
|-
+
| C
| || ||167138||167138||Insertion||||T
+
|-style="height:30px; width:30px; text-align:center;"
|-
+
| 167084
| || ||167142||167142||Insertion||||A
+
| 167084
|-
+
| Insertion
| || ||167149||167149||Insertion||||T
+
|  
|-
+
| C
| || ||167551||167551||Substitution||G||C
+
|-style="height:30px; width:30px; text-align:center;"
|-
+
| 167113
| || ||167802||167802||Substitution||C||T
+
| 167113
 +
| Insertion
 +
|  
 +
| T
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 167133
 +
| 167133
 +
| Insertion
 +
|  
 +
| A
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 167138
 +
| 167138
 +
| Insertion
 +
|  
 +
| T
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 167142
 +
| 167142
 +
| Insertion
 +
|  
 +
| A
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 167149
 +
| 167149
 +
| Insertion
 +
|  
 +
| T
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 167551
 +
| 167551
 +
| Substitution
 +
| G
 +
| C
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 167802
 +
| 167802
 +
| Substitution
 +
| C
 +
| T
 
|-
 
|-
 
| || colspan="6" |Six separate single nucleotides were inserted within ORF BUD14/[https://www.yeastgenome.org/locus/YAR014C YAR014C], and three single nucleotide substitutions were also made, altering its coding sequence. The start, stop, and majority of the reading frame remain the same, but the annotated protein is now two amino acids longer and a small section of the protein sequence is now different.
 
| || colspan="6" |Six separate single nucleotides were inserted within ORF BUD14/[https://www.yeastgenome.org/locus/YAR014C YAR014C], and three single nucleotide substitutions were also made, altering its coding sequence. The start, stop, and majority of the reading frame remain the same, but the annotated protein is now two amino acids longer and a small section of the protein sequence is now different.
Line 65: Line 132:
 
               |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
 
               |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
 
Old    167758  TATCCATTCAGTGCAGGTGTCGGAATTATACTCTCTGCATCACTCTGATTCTTGTTACCA  167817</pre>
 
Old    167758  TATCCATTCAGTGCAGGTGTCGGAATTATACTCTCTGCATCACTCTGATTCTTGTTACCA  167817</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAL051W YAL051W]||48772||48772||Substitution||T||A
+
|- style="height:30px; width:30px; text-align:center;"
|-
+
| rowspan="3"| 2011-02-03
| || ||49904||49904||Substitution||C||A
+
| rowspan="3"| [https://www.yeastgenome.org/locus/YAL051W YAL051W]
|-
+
| 48772
| || ||50327||50327||Substitution||C||A
+
| 48772
 +
| Substitution
 +
| T
 +
| A
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 49904
 +
| 49904
 +
| Substitution
 +
| C
 +
| A
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 50327
 +
| 50327
 +
| Substitution
 +
| C
 +
| A
 
|-
 
|-
 
| || colspan="6" |Nucleotide changes within the coding region of OAF1/[https://www.yeastgenome.org/locus/YAL051W YAL051W] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 70 is now Arginine rather than Tryptophan, residue 447 is now Glutamine rather than Proline, and residue 588 is now Lysine rather than Threonine.
 
| || colspan="6" |Nucleotide changes within the coding region of OAF1/[https://www.yeastgenome.org/locus/YAL051W YAL051W] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 70 is now Arginine rather than Tryptophan, residue 447 is now Glutamine rather than Proline, and residue 588 is now Lysine rather than Threonine.
Line 85: Line 167:
 
               |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
 
               |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
 
Old    50287  AACCGAGTTAGGGGCGATCTAAGCGATATCAATAATCACACACTTTTGAGAATTCATAAA  50346</pre>
 
Old    50287  AACCGAGTTAGGGGCGATCTAAGCGATATCAATAATCACACACTTTTGAGAATTCATAAA  50346</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAL053W YAL053W]||46231||46231||Substitution||C||G
+
|- style="height:30px; width:30px; text-align:center;"
|-
+
| rowspan="4"| 2011-02-03
| || ||46833||46833||Substitution||G||A
+
| rowspan="4"| [https://www.yeastgenome.org/locus/YAL053W YAL053W]
|-
+
| 46231
| || ||47821||47821||Substitution||T||A
+
| 46231
|-
+
| Substitution
| || ||47826||47826||Substitution||C||T
+
| C
 +
| G
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 46833
 +
| 46833
 +
| Substitution
 +
| G
 +
| A
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 47821
 +
| 47821
 +
| Substitution
 +
| T
 +
| A
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 47826
 +
| 47826
 +
| Substitution
 +
| C
 +
| T
 
|-
 
|-
 
| || colspan="6" |Nucleotide changes within the coding region of FLC2/[https://www.yeastgenome.org/locus/YAL053W YAL053W] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 111 is now Cysteine rather than Serine, residue 312 is now Asparagine rather than Aspartic Acid, and residues 641-643 are now NDS rather than IDP.
 
| || colspan="6" |Nucleotide changes within the coding region of FLC2/[https://www.yeastgenome.org/locus/YAL053W YAL053W] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 111 is now Cysteine rather than Serine, residue 312 is now Asparagine rather than Aspartic Acid, and residues 641-643 are now NDS rather than IDP.
Line 107: Line 208:
 
               |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
 
               |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
 
Old    47807  TGGCAAAAACAAAATTGATCCTGAACTGTTTGAATTGAGAAAAGCTGTTATGGACACCAA  47866</pre>
 
Old    47807  TGGCAAAAACAAAATTGATCCTGAACTGTTTGAATTGAGAAAAGCTGTTATGGACACCAA  47866</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAR023C YAR023C]||179683||179683||Substitution||T||A
+
|- style="height:30px; width:30px; text-align:center;"
|-
+
| rowspan="2"| 2011-02-03
| || ||179761||179761||Substitution||C||A
+
| rowspan="2"| [https://www.yeastgenome.org/locus/YAR023C YAR023C]
 +
| 179683
 +
| 179683
 +
| Substitution
 +
| T
 +
| A
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 179761
 +
| 179761
 +
| Substitution
 +
| C
 +
| A
 
|-
 
|-
 
| || colspan="6" |The substitution of two nucleotides within the coding region of [https://www.yeastgenome.org/locus/YAR023C YAR023C] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 20 is now Phenylalanine rather than Valine, and residue 46 is now Phenylalanine rather than Isoleucine.
 
| || colspan="6" |The substitution of two nucleotides within the coding region of [https://www.yeastgenome.org/locus/YAR023C YAR023C] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 20 is now Phenylalanine rather than Valine, and residue 46 is now Phenylalanine rather than Isoleucine.
Line 121: Line 233:
 
               ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
 
               ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
 
Old    179730  ATCACCATGGCAGGGGAGAGAACACCAGAAACCCAAATGTTTGTTAAAGTCGCCAAAATC  179789</pre>
 
Old    179730  ATCACCATGGCAGGGGAGAGAACACCAGAAACCCAAATGTTTGTTAAAGTCGCCAAAATC  179789</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAL026C YAL026C]||96838||96838||Deletion||C||
+
|- style="height:30px; width:30px; text-align:center;"
|-
+
| rowspan="7"| 2011-02-03
| || ||98350||98351||Substitution||CG||GC
+
| rowspan="7"| [https://www.yeastgenome.org/locus/YAL026C YAL026C]
|-
+
| 96838
| || ||97678||97679||Substitution||CC||GG
+
| 96838
|-
+
| Deletion
| || ||97025||97026||Substitution||AT||TA
+
| C
|-
+
|  
| || ||99563||99565||Substitution||ATC||TCG
+
|-style="height:30px; width:30px; text-align:center;"
|-
+
| 98350
| || ||96740||96740||Substitution||G||C
+
| 98351
|-
+
| Substitution
| || ||96841||96841||Insertion||||C
+
| CG
 +
| GC
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 97678
 +
| 97679
 +
| Substitution
 +
| CC
 +
| GG
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 97025
 +
| 97026
 +
| Substitution
 +
| AT
 +
| TA
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 99563
 +
| 99565
 +
| Substitution
 +
| ATC
 +
| TCG
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 96740
 +
| 96740
 +
| Substitution
 +
| G
 +
| C
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 96841
 +
| 96841
 +
| Insertion
 +
|  
 +
| C
 
|-
 
|-
 
| || colspan="6" |Nucleotide changes within the coding region of DRS2/[https://www.yeastgenome.org/locus/YAL026C YAL026C] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residues 45-46 are now AN rather than GY, residue 450 is now Alanine rather than Arginine, residue 674 is now Proline rather than Glycine, residues 891-892 are now NT rather than KS, residues 953-954 are now GD rather than AS, and residue 987 is now Valine rather than Leucine.
 
| || colspan="6" |Nucleotide changes within the coding region of DRS2/[https://www.yeastgenome.org/locus/YAL026C YAL026C] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residues 45-46 are now AN rather than GY, residue 450 is now Alanine rather than Arginine, residue 674 is now Proline rather than Glycine, residues 891-892 are now NT rather than KS, residues 953-954 are now GD rather than AS, and residue 987 is now Valine rather than Leucine.
Line 161: Line 304:
 
               |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
 
               |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
 
Old    99536  GAAGTACATGACTTGGTGGTATATAATATCCGTTCGCATGTGAGTTGGTGACCTTTGAAC  99595</pre>
 
Old    99536  GAAGTACATGACTTGGTGGTATATAATATCCGTTCGCATGTGAGTTGGTGACCTTTGAAC  99595</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAR019C YAR019C]||172425||172425||Insertion||||G
+
|- style="height:30px; width:30px; text-align:center;"
|-
+
| rowspan="4"| 2011-02-03
| || ||174173||174173||Substitution||G||C
+
| rowspan="4"| [https://www.yeastgenome.org/locus/YAR019C YAR019C]
|-
+
| 172425
| || ||174187||174188||Substitution||CG||GC
+
| 172425
|-
+
| Insertion
| || ||172434||172434||Deletion||G||
+
|  
 +
| G
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 174173
 +
| 174173
 +
| Substitution
 +
| G
 +
| C
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 174187
 +
| 174188
 +
| Substitution
 +
| CG
 +
| GC
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 172434
 +
| 172434
 +
| Deletion
 +
| G
 +
|  
 
|-
 
|-
 
| || colspan="6" |Nucleotide changes within the coding region of CDC15/[https://www.yeastgenome.org/locus/YAR019C YAR019C] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 316 is now Alanine rather than Arginine, residue 321 is now Alanine rather than Proline, and 900-902 are now KDV rather than NGC.
 
| || colspan="6" |Nucleotide changes within the coding region of CDC15/[https://www.yeastgenome.org/locus/YAR019C YAR019C] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 316 is now Alanine rather than Arginine, residue 321 is now Alanine rather than Proline, and 900-902 are now KDV rather than NGC.
Line 179: Line 341:
 
               |||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||
 
               |||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||
 
Old    174163  TCTGCCCAGGGAGCGGGAGCCGCTCGAAGACTGAATTTAGAGGGTGATATATTTAGTTTC  174222</pre>
 
Old    174163  TCTGCCCAGGGAGCGGGAGCCGCTCGAAGACTGAATTTAGAGGGTGATATATTTAGTTTC  174222</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAL047C YAL047C]||55746||55746||Substitution||A||G
+
|- style="height:30px; width:30px; text-align:center;"
|-
+
| rowspan="2"| 2011-02-03
| || ||55954||55954||Substitution||A||T
+
| rowspan="2"| [https://www.yeastgenome.org/locus/YAL047C YAL047C]
 +
| 55746
 +
| 55746
 +
| Substitution
 +
| A
 +
| G
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 55954
 +
| 55954
 +
| Substitution
 +
| A
 +
| T
 
|-
 
|-
 
| || colspan="6" |Nucleotide changes within the coding region of SPC72/[https://www.yeastgenome.org/locus/YAL047C YAL047C] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 302 is now Asparagine rather than Isoleucine.
 
| || colspan="6" |Nucleotide changes within the coding region of SPC72/[https://www.yeastgenome.org/locus/YAL047C YAL047C] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 302 is now Asparagine rather than Isoleucine.
Line 193: Line 366:
 
               ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
 
               ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
 
Old    55917  AATGGAATTTATAAATTGATCATATTCTTTGTGCAAAATTTCTATGACAATCTCTAATTG  55976</pre>
 
Old    55917  AATGGAATTTATAAATTGATCATATTCTTTGTGCAAAATTTCTATGACAATCTCTAATTG  55976</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAL060W YAL060W]||36120||36120||Substitution||C||A
+
|- style="height:30px; width:30px; text-align:center;"
 +
| 2011-02-03
 +
| [https://www.yeastgenome.org/locus/YAL060W YAL060W]
 +
| 36120
 +
| 36120
 +
| Substitution
 +
| C
 +
| A
 
|-
 
|-
 
| || colspan="6" |A single nucleotide substitution within the coding region of BDH1/[https://www.yeastgenome.org/locus/YAL060W YAL060W] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 322 is now Aspartic Acid rather than Alanine.
 
| || colspan="6" |A single nucleotide substitution within the coding region of BDH1/[https://www.yeastgenome.org/locus/YAL060W YAL060W] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 322 is now Aspartic Acid rather than Alanine.
Line 201: Line 381:
 
               ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
 
               ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
 
Old    36107  TATGTTGTCGAAGCCTTCGAAGAAGTTGTTCGTGCCATCCACAACGGAGACATCGCCATG  36166</pre>
 
Old    36107  TATGTTGTCGAAGCCTTCGAAGAAGTTGTTCGTGCCATCCACAACGGAGACATCGCCATG  36166</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAL010C YAL010C]||134852||134854||Substitution||TTG||ATT
+
|- style="height:30px; width:30px; text-align:center;"
 +
| 2011-02-03
 +
| [https://www.yeastgenome.org/locus/YAL010C YAL010C]
 +
| 134852
 +
| 134854
 +
| Substitution
 +
| TTG
 +
| ATT
 
|-
 
|-
 
| || colspan="6" |A single nucleotide substitution within the coding region of MDM10/[https://www.yeastgenome.org/locus/YAL010C YAL010C] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 272 is now Asparagine rather than Glutamine.
 
| || colspan="6" |A single nucleotide substitution within the coding region of MDM10/[https://www.yeastgenome.org/locus/YAL010C YAL010C] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 272 is now Asparagine rather than Glutamine.
Line 209: Line 396:
 
               ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
 
               ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
 
Old    134815  TGGCCGAATATGTGGAGGATATATGGCCGAATAATGGTTGCCAAGATAATGTCAAAGTTA  134874</pre>
 
Old    134815  TGGCCGAATATGTGGAGGATATATGGCCGAATAATGGTTGCCAAGATAATGTCAAAGTTA  134874</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAL017W YAL017W]||120442||120442||Substitution||C||G
+
|- style="height:30px; width:30px; text-align:center;"
 +
| 2011-02-03
 +
| [https://www.yeastgenome.org/locus/YAL017W YAL017W]
 +
| 120442
 +
| 120442
 +
| Substitution
 +
| C
 +
| G
 
|-
 
|-
 
| || colspan="6" |A single nucleotide substitution within the coding region of PSK1/[https://www.yeastgenome.org/locus/YAL017W YAL017W] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 73 is now Glutamic Acid rather than Glutamine.
 
| || colspan="6" |A single nucleotide substitution within the coding region of PSK1/[https://www.yeastgenome.org/locus/YAL017W YAL017W] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 73 is now Glutamic Acid rather than Glutamine.
Line 217: Line 411:
 
               |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
 
               |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
 
Old    120416  CGAATAAAAAGGAAGGTGATGAGTTCCAGCAAAGTTTAAGAGATACATTTGCGAGCTTTC  120475</pre>
 
Old    120416  CGAATAAAAAGGAAGGTGATGAGTTCCAGCAAAGTTTAAGAGATACATTTGCGAGCTTTC  120475</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAL020C YAL020C]||113702||113703||Substitution||CG||GC
+
|- style="height:30px; width:30px; text-align:center;"
 +
| 2011-02-03
 +
| [https://www.yeastgenome.org/locus/YAL020C YAL020C]
 +
| 113702
 +
| 113703
 +
| Substitution
 +
| CG
 +
| GC
 
|-
 
|-
 
| || colspan="6" |The substitution of two nucleotides within the coding region of ATS1/[https://www.yeastgenome.org/locus/YAL020C YAL020C] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 305 is now Glycine rather than Alanine.
 
| || colspan="6" |The substitution of two nucleotides within the coding region of ATS1/[https://www.yeastgenome.org/locus/YAL020C YAL020C] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 305 is now Glycine rather than Alanine.
Line 225: Line 426:
 
               ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
 
               ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
 
Old    113896  GCAGTCCAGGCTGGGACGCCTTTTGCGGGCCGCAGTTGCCATGCTCTCCCCAGCCCCAGC  113745</pre>
 
Old    113896  GCAGTCCAGGCTGGGACGCCTTTTGCGGGCCGCAGTTGCCATGCTCTCCCCAGCCCCAGC  113745</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAL025C YAL025C]||100399||100399||Substitution||A||C
+
|- style="height:30px; width:30px; text-align:center;"
 +
| 2011-02-03
 +
| [https://www.yeastgenome.org/locus/YAL025C YAL025C]
 +
| 100399
 +
| 100399
 +
| Substitution
 +
| A
 +
| C
 
|-
 
|-
 
| || colspan="6" |A single nucleotide substitution within the coding region of MAK16/[https://www.yeastgenome.org/locus/YAL025C YAL025C] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 250 is now Glutamic Acid rather than Glutamine.
 
| || colspan="6" |A single nucleotide substitution within the coding region of MAK16/[https://www.yeastgenome.org/locus/YAL025C YAL025C] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 250 is now Glutamic Acid rather than Glutamine.
Line 233: Line 441:
 
               ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
 
               ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
 
Old    100376  GCTTTCACTGTCGCTTTCGCTTTGACTGGCGCTGGAAGCTTCTCTGTCAGAGTCAGCTAA  100435</pre>
 
Old    100376  GCTTTCACTGTCGCTTTCGCTTTGACTGGCGCTGGAAGCTTCTCTGTCAGAGTCAGCTAA  100435</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAL056W YAL056W]||40231||40231||Substitution||C||G
+
|- style="height:30px; width:30px; text-align:center;"
|-
+
| rowspan="5"| 2011-02-03
| || ||41240||41240||Substitution||A||G
+
| rowspan="5"| [https://www.yeastgenome.org/locus/YAL056W YAL056W]
|-
+
| 40231
| || ||41664||41664||Substitution||T||G
+
| 40231
|-
+
| Substitution
| || ||41700||41700||Substitution||C||A
+
| C
|-
+
| G
| || ||41703||41703||Substitution||C||A
+
|-style="height:30px; width:30px; text-align:center;"
 +
| 41240
 +
| 41240
 +
| Substitution
 +
| A
 +
| G
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 41664
 +
| 41664
 +
| Substitution
 +
| T
 +
| G
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 41700
 +
| 41700
 +
| Substitution
 +
| C
 +
| A
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 41703
 +
| 41703
 +
| Substitution
 +
| C
 +
| A
 
|-
 
|-
 
| || colspan="6" |Nucleotide changes within the coding region of GPB2/[https://www.yeastgenome.org/locus/YAL056W YAL056W] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 661 is now Valine rather than Isoleucine, residue 802 is now Cysteine rather than Phenylalanine, and residues 814-815 are now ED rather than AA.
 
| || colspan="6" |Nucleotide changes within the coding region of GPB2/[https://www.yeastgenome.org/locus/YAL056W YAL056W] resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 661 is now Valine rather than Isoleucine, residue 802 is now Cysteine rather than Phenylalanine, and residues 814-815 are now ED rather than AA.
Line 257: Line 488:
 
               |||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
 
               |||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
 
Old    41652  TAAGCACGCAGTTTTGGGAAGAACATAAAATTACTCTGTCCAAGAAGGCAGCCGATGAGG  41711</pre>
 
Old    41652  TAAGCACGCAGTTTTGGGAAGAACATAAAATTACTCTGTCCAAGAAGGCAGCCGATGAGG  41711</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAL059C-A YAL059C-A], [https://www.yeastgenome.org/locus/YAL059W YAL059W]||36814||36814||Substitution||A||C
+
|- style="height:30px; width:30px; text-align:center;"
 +
| 2011-02-03
 +
| [https://www.yeastgenome.org/locus/YAL059C-A YAL059C-A], [https://www.yeastgenome.org/locus/YAL059W YAL059W]
 +
| 36814
 +
| 36814
 +
| Substitution
 +
| A
 +
| C
 
|-
 
|-
 
| || colspan="6" |A single nucleotide substitution within the coding regions of overlapping ORFs ECM1/[https://www.yeastgenome.org/locus/YAL059W YAL059W] and [https://www.yeastgenome.org/locus/YAL059C-A YAL059C-A] resulted in altered protein sequences for both ORFs. The start, stop, and reading frames remain the same for both proteins, but ECM1/[https://www.yeastgenome.org/locus/YAL059W YAL059W] protein residue 102 is now Alanine rather than Aspartic Acid, and [https://www.yeastgenome.org/locus/YAL059C-A YAL059C-A] protein residue 36 is now Alanine rather than Serine.
 
| || colspan="6" |A single nucleotide substitution within the coding regions of overlapping ORFs ECM1/[https://www.yeastgenome.org/locus/YAL059W YAL059W] and [https://www.yeastgenome.org/locus/YAL059C-A YAL059C-A] resulted in altered protein sequences for both ORFs. The start, stop, and reading frames remain the same for both proteins, but ECM1/[https://www.yeastgenome.org/locus/YAL059W YAL059W] protein residue 102 is now Alanine rather than Aspartic Acid, and [https://www.yeastgenome.org/locus/YAL059C-A YAL059C-A] protein residue 36 is now Alanine rather than Serine.
Line 265: Line 503:
 
               ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
 
               ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
 
Old    36777  AAGAAGTTAAATAAAAAGGCTCTGGAAGACAAACTGGACAACTCTATTTCATCCATGGAC  36836</pre>
 
Old    36777  AAGAAGTTAAATAAAAAGGCTCTGGAAGACAAACTGGACAACTCTATTTCATCCATGGAC  36836</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/HRA1 HRA1]||99841||99841||Substitution||A||T
+
|- style="height:30px; width:30px; text-align:center;"
 +
| 2011-02-03
 +
| [https://www.yeastgenome.org/locus/HRA1 HRA1]
 +
| 99841
 +
| 99841
 +
| Substitution
 +
| A
 +
| T
 
|-
 
|-
 
| || colspan="6" |A single nucleotide substitution was made within ncRNA [https://www.yeastgenome.org/locus/HRA1 HRA1].
 
| || colspan="6" |A single nucleotide substitution was made within ncRNA [https://www.yeastgenome.org/locus/HRA1 HRA1].
Line 273: Line 518:
 
               ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
 
               ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
 
Old    99826  TTCAACTTAGTGGCAATAAACAGATTTGGGTTTTCTGGCAAAAAAAGCCAATCACGTGAT  99885</pre>
 
Old    99826  TTCAACTTAGTGGCAATAAACAGATTTGGGTTTTCTGGCAAAAAAAGCCAATCACGTGAT  99885</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/ARS110 ARS110], [https://www.yeastgenome.org/locus/YAR019W-A YAR019W-A]||175378||175378||Substitution||T||C
+
|- style="height:30px; width:30px; text-align:center;"
|-
+
| rowspan="2"| 2011-02-03
| || ||175371||175371||Deletion||T||
+
| rowspan="2"| [https://www.yeastgenome.org/locus/ARS110 ARS110], [https://www.yeastgenome.org/locus/YAR019W-A YAR019W-A]
 +
| 175378
 +
| 175378
 +
| Substitution
 +
| T
 +
| C
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 175371
 +
| 175371
 +
| Deletion
 +
| T
 +
|  
 
|-
 
|-
 
| || colspan="6" |A single nucleotide deletion and a single nucleotide substitution were made in the intergenic region between ORF [https://www.yeastgenome.org/locus/YAR019W-A YAR019W-A] and [https://www.yeastgenome.org/locus/ARS110 ARS110].
 
| || colspan="6" |A single nucleotide deletion and a single nucleotide substitution were made in the intergenic region between ORF [https://www.yeastgenome.org/locus/YAR019W-A YAR019W-A] and [https://www.yeastgenome.org/locus/ARS110 ARS110].
Line 283: Line 539:
 
               ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
 
               ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
 
Old    175352  GCCCAATTTTGATTATGCCTTCTTTTTCATACACGACGCCAGAGGACATTATTACATTAC  175411</pre>
 
Old    175352  GCCCAATTTTGATTATGCCTTCTTTTTCATACACGACGCCAGAGGACATTATTACATTAC  175411</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/ARS106 ARS106], [https://www.yeastgenome.org/locus/YAL038W YAL038W]||70874||70874||Substitution||A||G
+
|- style="height:30px; width:30px; text-align:center;"
|-
+
| rowspan="2"| 2011-02-03
| || ||70794||70794||Substitution||C||G
+
| rowspan="2"| [https://www.yeastgenome.org/locus/ARS106 ARS106], [https://www.yeastgenome.org/locus/YAL038W YAL038W]
 +
| 70874
 +
| 70874
 +
| Substitution
 +
| A
 +
| G
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 70794
 +
| 70794
 +
| Substitution
 +
| C
 +
| G
 
|-
 
|-
 
| || colspan="6" |Two separate single nucleotide substitutions were made in the intergenic region between [https://www.yeastgenome.org/locus/ARS106 ARS106] and ORF CDC19/[https://www.yeastgenome.org/locus/YAL038W YAL038W].
 
| || colspan="6" |Two separate single nucleotide substitutions were made in the intergenic region between [https://www.yeastgenome.org/locus/ARS106 ARS106] and ORF CDC19/[https://www.yeastgenome.org/locus/YAL038W YAL038W].
Line 296: Line 563:
 
               ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
 
               ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
 
Old    70857  TTATTTTTTTTTTGTTAAAATTGATCCAAATGTAAATAAACAATCACAAGGAAAAAAAAA  70916</pre>
 
Old    70857  TTATTTTTTTTTTGTTAAAATTGATCCAAATGTAAATAAACAATCACAAGGAAAAAAAAA  70916</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/ARS104 ARS104], [https://www.yeastgenome.org/locus/YAL063C YAL063C]||28953||28953||Insertion||||T
+
|- style="height:30px; width:30px; text-align:center;"
|-
+
| rowspan="2"| 2011-02-03
| || ||28069||28069||Deletion||T||
+
| rowspan="2"| [https://www.yeastgenome.org/locus/ARS104 ARS104], [https://www.yeastgenome.org/locus/YAL063C YAL063C]
 +
| 28953
 +
| 28953
 +
| Insertion
 +
|  
 +
| T
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 28069
 +
| 28069
 +
| Deletion
 +
| T
 +
|  
 
|-
 
|-
 
| || colspan="6" |A single nucleotide deletion and a single nucleotide insertion were made in the intergenic region between ORF FLO9/[https://www.yeastgenome.org/locus/YAL063C YAL063C] and [https://www.yeastgenome.org/locus/ARS104 ARS104].
 
| || colspan="6" |A single nucleotide deletion and a single nucleotide insertion were made in the intergenic region between ORF FLO9/[https://www.yeastgenome.org/locus/YAL063C YAL063C] and [https://www.yeastgenome.org/locus/ARS104 ARS104].
Line 309: Line 587:
 
               |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
 
               |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
 
Old    28918  AGTAAACAAGAGATACCTAATTTCACAGCCACTTTT-GTTGCGGACACTGACGGGATGTG  28976</pre>
 
Old    28918  AGTAAACAAGAGATACCTAATTTCACAGCCACTTTT-GTTGCGGACACTGACGGGATGTG  28976</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAR023C YAR023C], [https://www.yeastgenome.org/locus/SUP56 tL(CAA)A]||180961||180961||Insertion||||CAAA
+
|- style="height:30px; width:30px; text-align:center;"
 +
| 2011-02-03
 +
| [https://www.yeastgenome.org/locus/YAR023C YAR023C], [https://www.yeastgenome.org/locus/SUP56 tL(CAA)A]
 +
| 180961
 +
| 180961
 +
| Insertion
 +
|  
 +
| CAAA
 
|-
 
|-
 
| || colspan="6" |A tetranucleotide insertion was made in the intergenic region between ORF [https://www.yeastgenome.org/locus/YAR023C YAR023C] and tRNA-Leu SUP56/[https://www.yeastgenome.org/locus/SUP56 tL(CAA)A].
 
| || colspan="6" |A tetranucleotide insertion was made in the intergenic region between ORF [https://www.yeastgenome.org/locus/YAR023C YAR023C] and tRNA-Leu SUP56/[https://www.yeastgenome.org/locus/SUP56 tL(CAA)A].
Line 317: Line 602:
 
               ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||
 
               ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||
 
Old    180940  TTCCCATTACAATGCCGAATAG----ATATGTAGTAGAACACGTACACGCATGATAATTA  180995</pre>
 
Old    180940  TTCCCATTACAATGCCGAATAG----ATATGTAGTAGAACACGTACACGCATGATAATTA  180995</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAL041W YAL041W], [https://www.yeastgenome.org/locus/YAL042W YAL042W]||62767||62767||Substitution||A||G
+
|- style="height:30px; width:30px; text-align:center;"
 +
| 2011-02-03
 +
| [https://www.yeastgenome.org/locus/YAL041W YAL041W], [https://www.yeastgenome.org/locus/YAL042W YAL042W]
 +
| 62767
 +
| 62767
 +
| Substitution
 +
| A
 +
| G
 
|-
 
|-
 
| || colspan="6" |A single nucleotide substitution was made in the intergenic region between ORFs ERV46/[https://www.yeastgenome.org/locus/YAL042W YAL042W] and CDC24/[https://www.yeastgenome.org/locus/YAL041W YAL041W].
 
| || colspan="6" |A single nucleotide substitution was made in the intergenic region between ORFs ERV46/[https://www.yeastgenome.org/locus/YAL042W YAL042W] and CDC24/[https://www.yeastgenome.org/locus/YAL041W YAL041W].
Line 325: Line 617:
 
               |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
 
               |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
 
Old    62757  TAGGATAGCAAAAGAGTACCATTGCTGTTATCATTTGTTGCCTAGCCCTATCAAGACCTG  62816</pre>
 
Old    62757  TAGGATAGCAAAAGAGTACCATTGCTGTTATCATTTGTTGCCTAGCCCTATCAAGACCTG  62816</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAR047C YAR047C], [https://www.yeastgenome.org/locus/YAR050W YAR050W]||203327||203327||Insertion||||T
+
|- style="height:30px; width:30px; text-align:center;"
|-
+
| rowspan="2"| 2011-02-03
| || ||202933||202933||Insertion||||A
+
| rowspan="2"| [https://www.yeastgenome.org/locus/YAR047C YAR047C], [https://www.yeastgenome.org/locus/YAR050W YAR050W]
 +
| 203327
 +
| 203327
 +
| Insertion
 +
|  
 +
| T
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 202933
 +
| 202933
 +
| Insertion
 +
|  
 +
| A
 
|-
 
|-
 
| || colspan="6" |Two separate single nucleotide insertions were made in the intergenic region between ORFs [https://www.yeastgenome.org/locus/YAR047C YAR047C] and FLO1/[https://www.yeastgenome.org/locus/YAR050W YAR050W].
 
| || colspan="6" |Two separate single nucleotide insertions were made in the intergenic region between ORFs [https://www.yeastgenome.org/locus/YAR047C YAR047C] and FLO1/[https://www.yeastgenome.org/locus/YAR050W YAR050W].
Line 338: Line 641:
 
               |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
 
               |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
 
Old    203314  TTCACTCTTGCTCG-TTGATGTAAGCTCTCTTCCGGGTTCTTATTTTTAATTCTTGTCAC  203372</pre>
 
Old    203314  TTCACTCTTGCTCG-TTGATGTAAGCTCTCTTCCGGGTTCTTATTTTTAATTCTTGTCAC  203372</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAR042W YAR042W], [https://www.yeastgenome.org/locus/YAR047C YAR047C]||198900||198900||Insertion||||A
+
|- style="height:30px; width:30px; text-align:center;"
 +
| 2011-02-03
 +
| [https://www.yeastgenome.org/locus/YAR042W YAR042W], [https://www.yeastgenome.org/locus/YAR047C YAR047C]
 +
| 198900
 +
| 198900
 +
| Insertion
 +
|  
 +
| A
 
|-
 
|-
 
| || colspan="6" |A single nucleotide insertion was made in the intergenic region between ORFs SWH1/[https://www.yeastgenome.org/locus/YAR042W YAR042W] and [https://www.yeastgenome.org/locus/YAR047C YAR047C].
 
| || colspan="6" |A single nucleotide insertion was made in the intergenic region between ORFs SWH1/[https://www.yeastgenome.org/locus/YAR042W YAR042W] and [https://www.yeastgenome.org/locus/YAR047C YAR047C].
Line 346: Line 656:
 
               ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
 
               ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
 
Old    198876  TAAGCCCCTTTTATGGATGCATGAG-AAAAAAAAAAGGTTTGCTACAACCATCTCAGGTC  198934</pre>
 
Old    198876  TAAGCCCCTTTTATGGATGCATGAG-AAAAAAAAAAGGTTTGCTACAACCATCTCAGGTC  198934</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAR020C YAR020C], [https://www.yeastgenome.org/locus/YAR023C YAR023C]||178647||178647||Substitution||T||C
+
|- style="height:30px; width:30px; text-align:center;"
|-
+
| rowspan="6"| 2011-02-03
| || ||178638||178638||Deletion||G||
+
| rowspan="6"| [https://www.yeastgenome.org/locus/YAR020C YAR020C], [https://www.yeastgenome.org/locus/YAR023C YAR023C]
|-
+
| 178647
| || ||178618||178618||Insertion||||A
+
| 178647
|-
+
| Substitution
| || ||178601||178601||Deletion||A||
+
| T
|-
+
| C
| || ||178256||178256||Substitution||G||C
+
|-style="height:30px; width:30px; text-align:center;"
|-
+
| 178638
| || ||177135||177135||Insertion||||T
+
| 178638
 +
| Deletion
 +
| G
 +
|  
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 178618
 +
| 178618
 +
| Insertion
 +
|  
 +
| A
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 178601
 +
| 178601
 +
| Deletion
 +
| A
 +
|  
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 178256
 +
| 178256
 +
| Substitution
 +
| G
 +
| C
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 177135
 +
| 177135
 +
| Insertion
 +
|  
 +
| T
 
|-
 
|-
 
| || colspan="6" |Several nucleotide sequence changes were made in the intergenic region between ORFs PAU7/[https://www.yeastgenome.org/locus/YAR020C YAR020C] and [https://www.yeastgenome.org/locus/YAR023C YAR023C].
 
| || colspan="6" |Several nucleotide sequence changes were made in the intergenic region between ORFs PAU7/[https://www.yeastgenome.org/locus/YAR020C YAR020C] and [https://www.yeastgenome.org/locus/YAR023C YAR023C].
Line 370: Line 707:
 
               ||||| ||||||||||||||||| ||||||||||||||||||| |||||||| |||||||
 
               ||||| ||||||||||||||||| ||||||||||||||||||| |||||||| |||||||
 
Old    178596  ATTGTAAGATTGTATCGTTCGAG-AACGTCAGGCATGATAGATGGTTGCAATTACAGGAC  178654</pre>
 
Old    178596  ATTGTAAGATTGTATCGTTCGAG-AACGTCAGGCATGATAGATGGTTGCAATTACAGGAC  178654</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAR018C YAR018C], [https://www.yeastgenome.org/locus/YAR019C YAR019C]||172170||172170||Insertion||||T
+
|- style="height:30px; width:30px; text-align:center;"
|-
+
| rowspan="10"| 2011-02-03
| || ||172042||172042||Insertion||||T
+
| rowspan="10"| [https://www.yeastgenome.org/locus/YAR018C YAR018C], [https://www.yeastgenome.org/locus/YAR019C YAR019C]
|-
+
| 172170
| || ||172041||172041||Insertion||||T
+
| 172170
|-
+
| Insertion
| || ||172020||172020||Deletion||A||
+
|  
|-
+
| T
| || ||172018||172018||Deletion||A||
+
|-style="height:30px; width:30px; text-align:center;"
|-
+
| 172042
| || ||171983||171983||Deletion||G||
+
| 172042
|-
+
| Insertion
| || ||171975||171977||Deletion||CTA||
+
|  
|-
+
| T
| || ||171972||171972||Substitution||C||T
+
|-style="height:30px; width:30px; text-align:center;"
|-
+
| 172041
| || ||171968||171968||Deletion||C||
+
| 172041
|-
+
| Insertion
| || ||171882||171882||Insertion||||C
+
|  
 +
| T
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 172020
 +
| 172020
 +
| Deletion
 +
| A
 +
|  
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 172018
 +
| 172018
 +
| Deletion
 +
| A
 +
|  
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 171983
 +
| 171983
 +
| Deletion
 +
| G
 +
|  
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 171975
 +
| 171977
 +
| Deletion
 +
| CTA
 +
|  
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 171972
 +
| 171972
 +
| Substitution
 +
| C
 +
| T
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 171968
 +
| 171968
 +
| Deletion
 +
| C
 +
|  
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 171882
 +
| 171882
 +
| Insertion
 +
|  
 +
| C
 
|-
 
|-
 
| || colspan="6" |Several nucleotide sequence changes were made in the intergenic region between ORFs KIN3/[https://www.yeastgenome.org/locus/YAR018C YAR018C] and CDC15/[https://www.yeastgenome.org/locus/YAR019C YAR019C].
 
| || colspan="6" |Several nucleotide sequence changes were made in the intergenic region between ORFs KIN3/[https://www.yeastgenome.org/locus/YAR018C YAR018C] and CDC15/[https://www.yeastgenome.org/locus/YAR019C YAR019C].
Line 405: Line 785:
 
               |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
 
               |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
 
Old    172125  GGAAGGTTCACAATTCTATATATAGTGTTAATGTAATGCTGTATTA-TTCTCTATATATG  172183</pre>
 
Old    172125  GGAAGGTTCACAATTCTATATATAGTGTTAATGTAATGCTGTATTA-TTCTCTATATATG  172183</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAR007C YAR007C], [https://www.yeastgenome.org/locus/YAR008W YAR008W]||158934||158934||Insertion||||G
+
|- style="height:30px; width:30px; text-align:center;"
 +
| 2011-02-03
 +
| [https://www.yeastgenome.org/locus/YAR007C YAR007C], [https://www.yeastgenome.org/locus/YAR008W YAR008W]
 +
| 158934
 +
| 158934
 +
| Insertion
 +
|  
 +
| G
 
|-
 
|-
 
| || colspan="6" |A single nucleotide insertion was made in the intergenic region between ORFs RFA1/[https://www.yeastgenome.org/locus/YAR007C YAR007C] and SEN34/[https://www.yeastgenome.org/locus/YAR008W YAR008W].
 
| || colspan="6" |A single nucleotide insertion was made in the intergenic region between ORFs RFA1/[https://www.yeastgenome.org/locus/YAR007C YAR007C] and SEN34/[https://www.yeastgenome.org/locus/YAR008W YAR008W].
Line 413: Line 800:
 
               |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
 
               |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
 
Old    158925  TAACATATAT-CAAAAAGAACGGCAAAAGGCGAGGAGGTTTTTATGCCACCGCTAGTATT  158983</pre>
 
Old    158925  TAACATATAT-CAAAAAGAACGGCAAAAGGCGAGGAGGTTTTTATGCCACCGCTAGTATT  158983</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/CEN1 CEN1], [https://www.yeastgenome.org/locus/YAR002W YAR002W]||152189||152190||Substitution||CA||AC
+
|- style="height:30px; width:30px; text-align:center;"
 +
| 2011-02-03
 +
| [https://www.yeastgenome.org/locus/CEN1 CEN1], [https://www.yeastgenome.org/locus/YAR002W YAR002W]
 +
| 152189
 +
| 152190
 +
| Substitution
 +
| CA
 +
| AC
 
|-
 
|-
 
| || colspan="6" |A dinucleotide substitution was made in the intergenic region between [https://www.yeastgenome.org/locus/CEN1 CEN1] and ORF NUP60/[https://www.yeastgenome.org/locus/YAR002W YAR002W]
 
| || colspan="6" |A dinucleotide substitution was made in the intergenic region between [https://www.yeastgenome.org/locus/CEN1 CEN1] and ORF NUP60/[https://www.yeastgenome.org/locus/YAR002W YAR002W]
Line 421: Line 815:
 
               ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
 
               ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
 
Old    152155  ATATATTTACAAGTGAAAGCTTATTGTAATGTGTCATTTTAAACATCAAATAACAGACCT  152214</pre>
 
Old    152155  ATATATTTACAAGTGAAAGCTTATTGTAATGTGTCATTTTAAACATCAAATAACAGACCT  152214</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAL067C YAL067C], [https://www.yeastgenome.org/locus/YAL067W-A YAL067W-A]||6454||6454||Deletion||C||
+
|- style="height:30px; width:30px; text-align:center;"
|-
+
| rowspan="5"| 2011-02-03
| || ||5927||5927||Insertion||||G
+
| rowspan="5"| [https://www.yeastgenome.org/locus/YAL067C YAL067C], [https://www.yeastgenome.org/locus/YAL067W-A YAL067W-A]
|-
+
| 6454
| || ||5244||5244||Substitution||G||A
+
| 6454
|-
+
| Deletion
| || ||3981||3982||Substitution||AT||TA
+
| C
|-
+
|  
| || ||3836||3836||Deletion||C||
+
|-style="height:30px; width:30px; text-align:center;"
 +
| 5927
 +
| 5927
 +
| Insertion
 +
|  
 +
| G
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 5244
 +
| 5244
 +
| Substitution
 +
| G
 +
| A
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 3981
 +
| 3982
 +
| Substitution
 +
| AT
 +
| TA
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 3836
 +
| 3836
 +
| Deletion
 +
| C
 +
|  
 
|-
 
|-
 
| || colspan="6" |Several nucleotide sequence changes were made in the intergenic region between ORFs [https://www.yeastgenome.org/locus/YAL067W-A YAL067W-A] and SEO1/[https://www.yeastgenome.org/locus/YAL067C YAL067C].
 
| || colspan="6" |Several nucleotide sequence changes were made in the intergenic region between ORFs [https://www.yeastgenome.org/locus/YAL067W-A YAL067W-A] and SEO1/[https://www.yeastgenome.org/locus/YAL067C YAL067C].
Line 449: Line 866:
 
               |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
 
               |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
 
Old    6420    AAGTTTCTTAAATAACCCGGATTGGTTAGGTTCACGCCATGCCTGGCGCGTACATTGAGG  6479</pre>
 
Old    6420    AAGTTTCTTAAATAACCCGGATTGGTTAGGTTCACGCCATGCCTGGCGCGTACATTGAGG  6479</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAL064C-A YAL064C-A], [https://www.yeastgenome.org/locus/YAL064W YAL064W]||16500||16500||Deletion||G||
+
|- style="height:30px; width:30px; text-align:center;"
|-
+
| rowspan="3"| 2011-02-03
| || ||16470||16470||Deletion||T||
+
| rowspan="3"| [https://www.yeastgenome.org/locus/YAL064C-A YAL064C-A], [https://www.yeastgenome.org/locus/YAL064W YAL064W]
|-
+
| 16500
| || ||16457||16457||Substitution||G||A
+
| 16500
 +
| Deletion
 +
| G
 +
|  
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 16470
 +
| 16470
 +
| Deletion
 +
| T
 +
|  
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 16457
 +
| 16457
 +
| Substitution
 +
| G
 +
| A
 
|-
 
|-
 
| || colspan="6" |A single nucleotide substitution and two separate single nucleotide deletions were made in the intergenic region between ORFs [https://www.yeastgenome.org/locus/YAL064C-A YAL064C-A] and [https://www.yeastgenome.org/locus/YAL064W YAL064W].
 
| || colspan="6" |A single nucleotide substitution and two separate single nucleotide deletions were made in the intergenic region between ORFs [https://www.yeastgenome.org/locus/YAL064C-A YAL064C-A] and [https://www.yeastgenome.org/locus/YAL064W YAL064W].
Line 461: Line 893:
 
               ||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||
 
               ||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||
 
Old    16450  TCTGTGGGAAATAAGAAATTTCAGCACCAGTAAAAGACGAGAAATATAGGGCACATAAAT  16509</pre>
 
Old    16450  TCTGTGGGAAATAAGAAATTTCAGCACCAGTAAAAGACGAGAAATATAGGGCACATAAAT  16509</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAL063C YAL063C], [https://www.yeastgenome.org/locus/YAL063C-A YAL063C-A]||23253||23253||Insertion||||T
+
|- style="height:30px; width:30px; text-align:center;"
 +
| 2011-02-03
 +
| [https://www.yeastgenome.org/locus/YAL063C YAL063C], [https://www.yeastgenome.org/locus/YAL063C-A YAL063C-A]
 +
| 23253
 +
| 23253
 +
| Insertion
 +
|  
 +
| T
 
|-
 
|-
 
| || colspan="6" |A single nucleotide insertion was made in the intergenic region between ORFs [https://www.yeastgenome.org/locus/YAL063C-A YAL063C-A] and FLO9/[https://www.yeastgenome.org/locus/YAL063C YAL063C].
 
| || colspan="6" |A single nucleotide insertion was made in the intergenic region between ORFs [https://www.yeastgenome.org/locus/YAL063C-A YAL063C-A] and FLO9/[https://www.yeastgenome.org/locus/YAL063C YAL063C].
Line 469: Line 908:
 
               ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
 
               ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
 
Old    23219  TTTGCTCATCATTGGATAATTTCTTTTTTTTTTTT-GATGCATCCAAACTTGGACCCCTT  23277</pre>
 
Old    23219  TTTGCTCATCATTGGATAATTTCTTTTTTTTTTTT-GATGCATCCAAACTTGGACCCCTT  23277</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAL021C YAL021C], [https://www.yeastgenome.org/locus/YAL022C YAL022C]||110470||110471||Substitution||CG||GC
+
|- style="height:30px; width:30px; text-align:center;"
 +
| 2011-02-03
 +
| [https://www.yeastgenome.org/locus/YAL021C YAL021C], [https://www.yeastgenome.org/locus/YAL022C YAL022C]
 +
| 110470
 +
| 110471
 +
| Substitution
 +
| CG
 +
| GC
 
|-
 
|-
 
| || colspan="6" |A dinucleotide substitution was made in the intergenic region between ORFs FUN26/[https://www.yeastgenome.org/locus/YAL022C YAL022C] and CCR4/[https://www.yeastgenome.org/locus/YAL021C YAL021C].
 
| || colspan="6" |A dinucleotide substitution was made in the intergenic region between ORFs FUN26/[https://www.yeastgenome.org/locus/YAL022C YAL022C] and CCR4/[https://www.yeastgenome.org/locus/YAL021C YAL021C].
Line 477: Line 923:
 
               ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
 
               ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
 
Old    110456  GCGTTTGATGATAACGTGTCGCCGTAACGTAAATCATTCATCCTTTCCTATGATTTTTTA  110515</pre>
 
Old    110456  GCGTTTGATGATAACGTGTCGCCGTAACGTAAATCATTCATCCTTTCCTATGATTTTTTA  110515</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/YAL010C YAL010C], [https://www.yeastgenome.org/locus/YAL011W YAL011W]||134125||134125||Insertion||||C
+
|- style="height:30px; width:30px; text-align:center;"
 +
| 2011-02-03
 +
| [https://www.yeastgenome.org/locus/YAL010C YAL010C], [https://www.yeastgenome.org/locus/YAL011W YAL011W]
 +
| 134125
 +
| 134125
 +
| Insertion
 +
|  
 +
| C
 
|-
 
|-
 
| || colspan="6" |A single nucleotide substitution was made in the intergenic region between ORFs SWC3/[https://www.yeastgenome.org/locus/YAL011W YAL011W] and MDM10/[https://www.yeastgenome.org/locus/YAL010C YAL010C].
 
| || colspan="6" |A single nucleotide substitution was made in the intergenic region between ORFs SWC3/[https://www.yeastgenome.org/locus/YAL011W YAL011W] and MDM10/[https://www.yeastgenome.org/locus/YAL010C YAL010C].
Line 485: Line 938:
 
               |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
 
               |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
 
Old    134096  ATTCTGCTTTAACGCCATTATGATTATACA-ATTGTATTACTTATTTTTTAACCTGTATA  134154</pre>
 
Old    134096  ATTCTGCTTTAACGCCATTATGATTATACA-ATTGTATTACTTATTTTTTAACCTGTATA  134154</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2011-02-03||[https://www.yeastgenome.org/locus/TEL01R TEL01R] TEL01R-XC||229568||229568||Insertion||||G
+
|- style="height:30px; width:30px; text-align:center;"
 +
| 2011-02-03
 +
| [https://www.yeastgenome.org/locus/TEL01R TEL01R] TEL01R-XC
 +
| 229568
 +
| 229568
 +
| Insertion
 +
|  
 +
| G
 
|-
 
|-
 
| || colspan="6" |A single nucleotide insertion was made within the right telomere of Chromosome 1, [https://www.yeastgenome.org/locus/TEL01R TEL01R] specifically within the X element Core sequence TEL01R-XC.
 
| || colspan="6" |A single nucleotide insertion was made within the right telomere of Chromosome 1, [https://www.yeastgenome.org/locus/TEL01R TEL01R] specifically within the X element Core sequence TEL01R-XC.
Line 493: Line 953:
 
               |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
 
               |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
 
Old    229533  ATTACGCATGGAGTTAAGAGTATTTACATGATAATT-GGGTTCCGTGATTCATTATAGAT  229591</pre>
 
Old    229533  ATTACGCATGGAGTTAAGAGTATTTACATGATAATT-GGGTTCCGTGATTCATTATAGAT  229591</pre>
Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
+
'''Engel SR, et al.''' (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98<br>
|-
+
[http://www.yeastgenome.org/reference/24374639/overview SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/24374639 PubMed] | [http://g3journal.org/content/4/3/389 Full-Text]
|2008-03-05||[https://www.yeastgenome.org/locus/YAL044C YAL044C]||58424||58424||Substitution||C||T
+
|- style="height:30px; width:30px; text-align:center;"
|-
+
| rowspan="3"| 2008-03-05
| || ||58247||58247||Substitution||A||C
+
| rowspan="3"| [https://www.yeastgenome.org/locus/YAL044C YAL044C]
|-
+
| 58424
| || ||58196||58196||Substitution||A||C
+
| 58424
 +
| Substitution
 +
| C
 +
| T
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 58247
 +
| 58247
 +
| Substitution
 +
| A
 +
| C
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 58196
 +
| 58196
 +
| Substitution
 +
| A
 +
| C
 
|-
 
|-
 
| || colspan="6" |Three single base substitutions were made within ORF [https://www.yeastgenome.org/locus/YAL044C YAL044C]/GCV3 to correct errors in the systematic reference sequence for Chromosome I: Two separate A -> C transversions at 58196 and 58247, and a C -> T transition at 58424. These errors were verified by sequencing in 3 different strains, all of ResGen BY4741 (S288C) background. SGD thanks Michael E. Rice for bringing these errors to our attention, and for verifying the correct sequence.
 
| || colspan="6" |Three single base substitutions were made within ORF [https://www.yeastgenome.org/locus/YAL044C YAL044C]/GCV3 to correct errors in the systematic reference sequence for Chromosome I: Two separate A -> C transversions at 58196 and 58247, and a C -> T transition at 58424. These errors were verified by sequencing in 3 different strains, all of ResGen BY4741 (S288C) background. SGD thanks Michael E. Rice for bringing these errors to our attention, and for verifying the correct sequence.
Line 517: Line 992:
 
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  
 
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  
 
Old:  58371 ATTCTTGTTTAGGGCATTGCCGGAGCTGTTTCTCAAAAACAATTTGCTCACAGCGGGCAT 58430</pre>
 
Old:  58371 ATTCTTGTTTAGGGCATTGCCGGAGCTGTTTCTCAAAAACAATTTGCTCACAGCGGGCAT 58430</pre>
|-
+
|- style="height:30px; width:30px; text-align:center;"
|2007-04-05||[https://www.yeastgenome.org/locus/YAL004W YAL004W], [https://www.yeastgenome.org/locus/YAL005C YAL005C]||140169||140169||Substitution||A||G
+
| rowspan="3"| 2007-04-05
|-
+
| rowspan="3"| [https://www.yeastgenome.org/locus/YAL004W YAL004W], [https://www.yeastgenome.org/locus/YAL005C YAL005C]
| || ||140182||140182||Substitution||A||G
+
| 140169
|-
+
| 140169
| || ||140811||140811||Substitution||A||G
+
| Substitution
 +
| A
 +
| G
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 140182
 +
| 140182
 +
| Substitution
 +
| A
 +
| G
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 140811
 +
| 140811
 +
| Substitution
 +
| A
 +
| G
 
|-
 
|-
 
| || colspan="6" |Three single nucleotide substitutions were made within the coding sequence of SSA1 (at nucleotide positions 623, 1252, and 1265 relative to the SSA1 coding sequence), based on the sequence reported by Slater and Craig (1989) and corresponding to GenBank entry X12926. These changes result in phenylalanine to serine changes at amino acid residues 208 and 422 and a change from serine to proline at amino acid residue 418. Thanks to Andreas Bracher for bringing these corrections to our attention.
 
| || colspan="6" |Three single nucleotide substitutions were made within the coding sequence of SSA1 (at nucleotide positions 623, 1252, and 1265 relative to the SSA1 coding sequence), based on the sequence reported by Slater and Craig (1989) and corresponding to GenBank entry X12926. These changes result in phenylalanine to serine changes at amino acid residues 208 and 422 and a change from serine to proline at amino acid residue 418. Thanks to Andreas Bracher for bringing these corrections to our attention.
Line 535: Line 1,024:
 
140155 TGGAAAAGATCTCGAACTTCTTTGTTGAAATGGTAGAGTTT 140195  old sequence, chromosomal coordinates</pre>
 
140155 TGGAAAAGATCTCGAACTTCTTTGTTGAAATGGTAGAGTTT 140195  old sequence, chromosomal coordinates</pre>
 
Slater MR and Craig EA (1989) The SSA1 and SSA2 genes of the yeast Saccharomyces cerevisiae. Nucleic Acids Res 17(2):805-6
 
Slater MR and Craig EA (1989) The SSA1 and SSA2 genes of the yeast Saccharomyces cerevisiae. Nucleic Acids Res 17(2):805-6
|-
+
|- style="height:30px; width:30px; text-align:center;"
|2006-01-19||[https://www.yeastgenome.org/locus/YAR042W YAR042W]||193355||193355||Substitution||G||A
+
| 2006-01-19
 +
| [https://www.yeastgenome.org/locus/YAR042W YAR042W]
 +
| 193355
 +
| 193355
 +
| Substitution
 +
| G
 +
| A
 
|-
 
|-
 
| || colspan="6" |When confirming the G nucleotide insertion that resulted in the merger of SWH1/[https://www.yeastgenome.org/locus/YAR042W YAR042W] and OSH1/[https://www.yeastgenome.org/locus/YAR044W YAR044W] (see 2003-09-27), SGD detected an additional sequencing error. The substitution of an A nt for a G nt changes amino acid 248 from a serine to an asparagine.
 
| || colspan="6" |When confirming the G nucleotide insertion that resulted in the merger of SWH1/[https://www.yeastgenome.org/locus/YAR042W YAR042W] and OSH1/[https://www.yeastgenome.org/locus/YAR044W YAR044W] (see 2003-09-27), SGD detected an additional sequencing error. The substitution of an A nt for a G nt changes amino acid 248 from a serine to an asparagine.
Line 543: Line 1,038:
 
             |||||||||||||| ||||||||||||||||
 
             |||||||||||||| ||||||||||||||||
 
Old: 193341 CGACACCGCCACCAGCACCAAGATCGCCATC 193371</pre>
 
Old: 193341 CGACACCGCCACCAGCACCAAGATCGCCATC 193371</pre>
|-
+
|- style="height:30px; width:30px; text-align:center;"
|2004-07-20||[https://www.yeastgenome.org/locus/YAL051W YAL051W]||51694||51694||Deletion||G||
+
| rowspan="2"| 2004-07-20
|-
+
| rowspan="2"| [https://www.yeastgenome.org/locus/YAL051W YAL051W]
| || ||51688||51688||Deletion||G||
+
| 51694
 +
| 51694
 +
| Deletion
 +
| G
 +
|  
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 51688
 +
| 51688
 +
| Deletion
 +
| G
 +
|  
 
|-
 
|-
 
| || colspan="6" |The work of Kellis et al. 2003 predicted the deletion of 2 separate G nucleotides in [https://www.yeastgenome.org/locus/YAL051W YAL051W] at chromosomal coordinates 51688 and 51694, and these sequence errors were confirmed in S288C by SGD. As a consequence of these changes, [https://www.yeastgenome.org/locus/YAL051W YAL051W] was shortened at the 3' end, altering the C-terminus and decreasing the size of the predicted protein from 1062 to 1047 amino acids.
 
| || colspan="6" |The work of Kellis et al. 2003 predicted the deletion of 2 separate G nucleotides in [https://www.yeastgenome.org/locus/YAL051W YAL051W] at chromosomal coordinates 51688 and 51694, and these sequence errors were confirmed in S288C by SGD. As a consequence of these changes, [https://www.yeastgenome.org/locus/YAL051W YAL051W] was shortened at the 3' end, altering the C-terminus and decreasing the size of the predicted protein from 1062 to 1047 amino acids.
Line 552: Line 1,057:
 
           |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
 
           |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
 
Old: 51666 TTTATTTGATTATGACTTTTTGGTTTGGGCAATGACTTTGCTTAAAAATTTTCTTTCCAA 51725</pre>
 
Old: 51666 TTTATTTGATTATGACTTTTTGGTTTGGGCAATGACTTTGCTTAAAAATTTTCTTTCCAA 51725</pre>
Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54
+
'''Kellis M, et al.''' (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54. <br>
|-
+
[https://www.yeastgenome.org/reference/S000073327 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/12748633 PubMed] | [https://www.nature.com/articles/nature01644 Full-Text] | [https://www.yeastgenome.org/reference/S000140268 Comments Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54 Errata] <br>
|2004-01-30||[https://www.yeastgenome.org/locus/YAR014C YAR014C]||166772||166772||Deletion||G||
+
|- style="height:30px; width:30px; text-align:center;"
 +
| 2004-01-30
 +
| [https://www.yeastgenome.org/locus/YAR014C YAR014C]
 +
| 166772
 +
| 166772
 +
| Deletion
 +
| G
 +
|  
 
|-
 
|-
 
| || colspan="6" |Kellis et al. 2003 predicted and confirmed the deletion of a single G nucleotide at chromosomal coordinate 166772. As a consequence of this sequence change, [https://www.yeastgenome.org/locus/YAR014C YAR014C] was extended at the 3' end, altering the C-terminus and increasing the size of the predicted protein from 702 to 707 amino acids.
 
| || colspan="6" |Kellis et al. 2003 predicted and confirmed the deletion of a single G nucleotide at chromosomal coordinate 166772. As a consequence of this sequence change, [https://www.yeastgenome.org/locus/YAR014C YAR014C] was extended at the 3' end, altering the C-terminus and increasing the size of the predicted protein from 702 to 707 amino acids.
Line 560: Line 1,072:
 
             ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
 
             ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
 
Old: 166731 TTGTAAGGACAATATCATTTACGAATAATTTCATCCAATTGGTTTCATCAACACA 166785</pre>
 
Old: 166731 TTGTAAGGACAATATCATTTACGAATAATTTCATCCAATTGGTTTCATCAACACA 166785</pre>
Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54
+
'''Kellis M, et al.''' (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54. <br>
|-
+
[https://www.yeastgenome.org/reference/S000073327 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/12748633 PubMed] | [https://www.nature.com/articles/nature01644 Full-Text] | [https://www.yeastgenome.org/reference/S000140268 Comments Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54 Errata] <br>
|2004-01-24||[https://www.yeastgenome.org/locus/YAL056W YAL056W]||41778||41778||Insertion||||G
+
|- style="height:30px; width:30px; text-align:center;"
 +
| 2004-01-24
 +
| [https://www.yeastgenome.org/locus/YAL056W YAL056W]
 +
| 41778
 +
| 41778
 +
| Insertion
 +
|  
 +
| G
 
|-
 
|-
 
| || colspan="6" |Kellis et al. 2003 predicted and confirmed the insertion of a single G nucleotide after the T at chromosomal coordinate 41778. As a consequence of this sequence change, [https://www.yeastgenome.org/locus/YAL056W YAL056W] was extended at the 3' end, altering the C-terminus and increasing the size of the predicted protein increasing from 847 to 880 amino acids.
 
| || colspan="6" |Kellis et al. 2003 predicted and confirmed the insertion of a single G nucleotide after the T at chromosomal coordinate 41778. As a consequence of this sequence change, [https://www.yeastgenome.org/locus/YAL056W YAL056W] was extended at the 3' end, altering the C-terminus and increasing the size of the predicted protein increasing from 847 to 880 amino acids.
Line 568: Line 1,087:
 
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
 
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
 
Old: 41724 GCGAAAATGAAGATACAAATTCAAATATAGTAGTTGGTGTCGGTGGCACTTCTTT-CAAT 41782</pre>
 
Old: 41724 GCGAAAATGAAGATACAAATTCAAATATAGTAGTTGGTGTCGGTGGCACTTCTTT-CAAT 41782</pre>
Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54
+
'''Kellis M, et al.''' (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54. <br>
|-
+
[https://www.yeastgenome.org/reference/S000073327 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/12748633 PubMed] | [https://www.nature.com/articles/nature01644 Full-Text] | [https://www.yeastgenome.org/reference/S000140268 Comments Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54 Errata] <br>
|2004-01-22||[https://www.yeastgenome.org/locus/YAL002W YAL002W]||143848||143848||Insertion||||C
+
|- style="height:30px; width:30px; text-align:center;"
 +
| 2004-01-22
 +
| [https://www.yeastgenome.org/locus/YAL002W YAL002W]
 +
| 143848
 +
| 143848
 +
| Insertion
 +
|  
 +
| C
 
|-
 
|-
 
| || colspan="6" |Kellis et al. 2003 and Cliften et al. 2003 predicted and confirmed the insertion of a single C nucleotide after the C at chromosomal coordinate 143848. As a consequence of this sequence change, [https://www.yeastgenome.org/locus/YAL002W YAL002W] was extended at the 5' end, altering the N-terminus and increasing the size of the predicted protein from 1176 to 1274 amino acids.
 
| || colspan="6" |Kellis et al. 2003 and Cliften et al. 2003 predicted and confirmed the insertion of a single C nucleotide after the C at chromosomal coordinate 143848. As a consequence of this sequence change, [https://www.yeastgenome.org/locus/YAL002W YAL002W] was extended at the 5' end, altering the N-terminus and increasing the size of the predicted protein from 1176 to 1274 amino acids.
Line 576: Line 1,102:
 
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
 
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
 
Old: 143826 ATCTAGTTCTTCATATACGGCAC-TCCCCTGAACGAAGATGGTCCTAAAGGGGTAGCTTC 143884</pre>
 
Old: 143826 ATCTAGTTCTTCATATACGGCAC-TCCCCTGAACGAAGATGGTCCTAAAGGGGTAGCTTC 143884</pre>
Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54
+
'''Kellis M, et al.''' (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54. <br>
Cliften P, et al. (2003) Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301(5629):71-6
+
[https://www.yeastgenome.org/reference/S000073327 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/12748633 PubMed] | [https://www.nature.com/articles/nature01644 Full-Text] | [https://www.yeastgenome.org/reference/S000140268 Comments Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54 Errata] <br>
|-
+
'''Cliften P, et al.''' (2003) Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301(5629):71-6. <br>
|2003-12-17||[https://www.yeastgenome.org/locus/YAL013W YAL013W]||130239||130239||Insertion||||C
+
[https://www.yeastgenome.org/reference/S000073948 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/12775844 PubMed] | [https://science.sciencemag.org/content/301/5629/71.long Full-Text] | [https://science.sciencemag.org/content/suppl/2003/07/03/1084337.DC1 Web Supplement] <br>
|-
+
|- style="height:30px; width:30px; text-align:center;"
| || ||130246||130247||Substitution||CG||GC
+
| rowspan="2"| 2003-12-17
 +
| rowspan="2"| [https://www.yeastgenome.org/locus/YAL013W YAL013W]
 +
| 130239
 +
| 130239
 +
| Insertion
 +
|  
 +
| C
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 130246
 +
| 130247
 +
| Substitution
 +
| CG
 +
| GC
 
|-
 
|-
 
| || colspan="6" |Kellis et al. 2003 and Brachat et al. 2003 predicted and confirmed the insertion of a single C nucleotide after the C at position 130239 on Chromosome I. As a consequence of this sequence change, [https://www.yeastgenome.org/locus/YAL013W YAL013W] was extended at the 3' end, altering the C-terminus and increasing the size of the predicted protein from 362 to 420 amino acids. They also found an additional seqeuncing error: the CG at 130246-130247 should be GC.
 
| || colspan="6" |Kellis et al. 2003 and Brachat et al. 2003 predicted and confirmed the insertion of a single C nucleotide after the C at position 130239 on Chromosome I. As a consequence of this sequence change, [https://www.yeastgenome.org/locus/YAL013W YAL013W] was extended at the 3' end, altering the C-terminus and increasing the size of the predicted protein from 362 to 420 amino acids. They also found an additional seqeuncing error: the CG at 130246-130247 should be GC.
Line 587: Line 1,125:
 
             ||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||
 
             ||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||
 
New: 130201 ACTTGATAACAAGACGCTGAGCTGTATCACGGGCTACGCCAGCGCAGCACAGCTGTGCTA 130260</pre>
 
New: 130201 ACTTGATAACAAGACGCTGAGCTGTATCACGGGCTACGCCAGCGCAGCACAGCTGTGCTA 130260</pre>
Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54
+
'''Kellis M, et al.''' (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54. <br>
Brachat S, et al. (2003) Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii. Genome Biol 4(7):R45
+
[https://www.yeastgenome.org/reference/S000073327 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/12748633 PubMed] | [https://www.nature.com/articles/nature01644 Full-Text] | [https://www.yeastgenome.org/reference/S000140268 Comments Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54 Errata] <br>
|-
+
'''Brachat S, et al.''' (2003) Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii. Genome Biol 4(7):R45. <br>
|2003-09-27||[https://www.yeastgenome.org/locus/YAR042W YAR042W], [https://www.yeastgenome.org/locus/YAR044W YAR044W]||193300||193300||Insertion||||G
+
[https://www.yeastgenome.org/reference/S000073670 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/12844361 PubMed] | [https://genomebiology.biomedcentral.com/articles/10.1186/gb-2003-4-7-r45 Full-Text]<br>
 +
|- style="height:30px; width:30px; text-align:center;"
 +
| 2003-09-27
 +
| [https://www.yeastgenome.org/locus/YAR042W YAR042W], [https://www.yeastgenome.org/locus/YAR044W YAR044W]
 +
| 193300
 +
| 193300
 +
| Insertion
 +
|  
 +
| G
 
|-
 
|-
 
| || colspan="6" |Insertion of a single G after the G at 193300 merged SWH1/[https://www.yeastgenome.org/locus/YAR042W YAR042W] and OSH1/[https://www.yeastgenome.org/locus/YAR044W YAR044W]. After merging [https://www.yeastgenome.org/locus/YAR042W YAR042W] (coordinates 192613-193383 (1-771)) and [https://www.yeastgenome.org/locus/YAR044W YAR044W] (coordinates 193599-196178 (1-2580)), the coordinates of the merged ORF, SWH1/[https://www.yeastgenome.org/locus/YAR042W YAR042W], are 192613-196179 (1-3567). OSH1 and [https://www.yeastgenome.org/locus/YAR044W YAR044W] are now aliases of SWH1/[https://www.yeastgenome.org/locus/YAR042W YAR042W]. This sequence change was predicted by several studies, then verified in S288c by SGD.
 
| || colspan="6" |Insertion of a single G after the G at 193300 merged SWH1/[https://www.yeastgenome.org/locus/YAR042W YAR042W] and OSH1/[https://www.yeastgenome.org/locus/YAR044W YAR044W]. After merging [https://www.yeastgenome.org/locus/YAR042W YAR042W] (coordinates 192613-193383 (1-771)) and [https://www.yeastgenome.org/locus/YAR044W YAR044W] (coordinates 193599-196178 (1-2580)), the coordinates of the merged ORF, SWH1/[https://www.yeastgenome.org/locus/YAR042W YAR042W], are 192613-196179 (1-3567). OSH1 and [https://www.yeastgenome.org/locus/YAR044W YAR044W] are now aliases of SWH1/[https://www.yeastgenome.org/locus/YAR042W YAR042W]. This sequence change was predicted by several studies, then verified in S288c by SGD.
Line 597: Line 1,143:
 
New: 193261 CTTGAACACGGTGCTGACCCCTTCAAGAGAGACCGCAAGGGCAAACTGCCCATCGAGCTC 193320</pre>
 
New: 193261 CTTGAACACGGTGCTGACCCCTTCAAGAGAGACCGCAAGGGCAAACTGCCCATCGAGCTC 193320</pre>
 
Schmalix WA and Bandlow W (1994) SWH1 from yeast encodes a candidate nuclear factor containing ankyrin repeats and showing homology to mammalian oxysterol-binding protein. Biochim Biophys Acta 1219(1):205-10
 
Schmalix WA and Bandlow W (1994) SWH1 from yeast encodes a candidate nuclear factor containing ankyrin repeats and showing homology to mammalian oxysterol-binding protein. Biochim Biophys Acta 1219(1):205-10
Beh CT, et al. (2001) Overlapping functions of the yeast oxysterol-binding protein homologues. Genetics 157(3):1117-40
+
Beh CT, et al. (2001) Overlapping functions of the yeast oxysterol-binding protein homologues. Genetics 157(3):1117-40 <br>
Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54
+
[https://www.yeastgenome.org/reference/S000059993 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/11238399 PubMed] | [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1461579 Full-Text] <br>
Brachat S, et al. (2003) Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii. Genome Biol 4(7):R45
+
'''Kellis M, et al.''' (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54. <br>
Cliften P, et al. (2003) Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301(5629):71-6
+
[https://www.yeastgenome.org/reference/S000073327 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/12748633 PubMed] | [https://www.nature.com/articles/nature01644 Full-Text] | [https://www.yeastgenome.org/reference/S000140268 Comments Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54 Errata] <br>
|-
+
'''Brachat S, et al.''' (2003) Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii. Genome Biol 4(7):R45. <br>
|2002-12-17||[https://www.yeastgenome.org/locus/YAL023C YAL023C]||108137||108137||Insertion||||CC
+
[https://www.yeastgenome.org/reference/S000073670 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/12844361 PubMed] | [https://genomebiology.biomedcentral.com/articles/10.1186/gb-2003-4-7-r45 Full-Text]<br>
|-
+
'''Cliften P, et al.''' (2003) Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301(5629):71-6. <br>
| || ||108143||108143||Insertion||||G
+
[https://www.yeastgenome.org/reference/S000073948 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/12775844 PubMed] | [https://science.sciencemag.org/content/301/5629/71.long Full-Text] | [https://science.sciencemag.org/content/suppl/2003/07/03/1084337.DC1 Web Supplement] <br>
 +
|- style="height:30px; width:30px; text-align:center;"
 +
| rowspan="2"| 2002-12-17
 +
| rowspan="2"| [https://www.yeastgenome.org/locus/YAL023C YAL023C]
 +
| 108137
 +
| 108137
 +
| Insertion
 +
|  
 +
| CC
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 108143
 +
| 108143
 +
| Insertion
 +
|  
 +
| G
 
|-
 
|-
 
| || colspan="6" |Due to the insertion of CC after the C at 108137, and the insertion of a G after the G at 108143 in the systematic sequence of Chromosome I, the coordinates of PMT2/[https://www.yeastgenome.org/locus/YAL023C YAL023C] have been changed. Thanks to Verena Girrbach (verena.girrbach@biologie.uni-regensburg.de) for reporting this sequence error in the systematic sequence of PMT2/FUN25/[https://www.yeastgenome.org/locus/YAL023C YAL023C] to SGD.
 
| || colspan="6" |Due to the insertion of CC after the C at 108137, and the insertion of a G after the G at 108143 in the systematic sequence of Chromosome I, the coordinates of PMT2/[https://www.yeastgenome.org/locus/YAL023C YAL023C] have been changed. Thanks to Verena Girrbach (verena.girrbach@biologie.uni-regensburg.de) for reporting this sequence error in the systematic sequence of PMT2/FUN25/[https://www.yeastgenome.org/locus/YAL023C YAL023C] to SGD.
Line 610: Line 1,170:
 
             |||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||
 
             |||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||
 
New: 108121 AGTCTGGGTAAATTTCCCCAGAAGGGAAGTCCCAAGAACCGTTGTAGCCTGCCAAATAAC 108180</pre>
 
New: 108121 AGTCTGGGTAAATTTCCCCAGAAGGGAAGTCCCAAGAACCGTTGTAGCCTGCCAAATAAC 108180</pre>
|-
+
|- style="height:30px; width:30px; text-align:center;"
|2002-12-17||[https://www.yeastgenome.org/locus/YAL014C YAL014C]||128441||128441||Insertion||||T
+
| 2002-12-17
 +
| [https://www.yeastgenome.org/locus/YAL014C YAL014C]
 +
| 128441
 +
| 128441
 +
| Insertion
 +
|  
 +
| T
 
|-
 
|-
 
| || colspan="6" |Due to the insertion of a single T nucleotide after the T at coordinate 128441 in the systematic sequence of Chromosome I, the ORF SUN8/[https://www.yeastgenome.org/locus/YAL014C YAL014C] was extended 450 nucleotides in the 3' direction, making the protein product 150 amino acids longer at the C-terminus. Thanks to Lena Burri, Trevor Lithgow, and Hugh Pelham for reporting this sequence error in the systematic sequence of SYN8/UIP2/[https://www.yeastgenome.org/locus/YAL014C YAL014C] to SGD.
 
| || colspan="6" |Due to the insertion of a single T nucleotide after the T at coordinate 128441 in the systematic sequence of Chromosome I, the ORF SUN8/[https://www.yeastgenome.org/locus/YAL014C YAL014C] was extended 450 nucleotides in the 3' direction, making the protein product 150 amino acids longer at the C-terminus. Thanks to Lena Burri, Trevor Lithgow, and Hugh Pelham for reporting this sequence error in the systematic sequence of SYN8/UIP2/[https://www.yeastgenome.org/locus/YAL014C YAL014C] to SGD.
Line 618: Line 1,184:
 
New: 128401 TTCTAAATCAACCAGCAGCGAGTCGTTCTGAGAAACGATCTCATTATTAAGGTCCAGCGA 128460</pre>
 
New: 128401 TTCTAAATCAACCAGCAGCGAGTCGTTCTGAGAAACGATCTCATTATTAAGGTCCAGCGA 128460</pre>
 
Lewis MJ and Pelham HR (2002) A new yeast endosomal SNARE related to mammalian syntaxin 8. Traffic 3(12):922-9
 
Lewis MJ and Pelham HR (2002) A new yeast endosomal SNARE related to mammalian syntaxin 8. Traffic 3(12):922-9
|-
+
|- style="height:30px; width:30px; text-align:center;"
|1998-09-02||[https://www.yeastgenome.org/locus/YAL062W YAL062W], [https://www.yeastgenome.org/locus/YAL063C YAL063C]||29254||29254||Deletion||A||
+
| rowspan="6"| 1998-09-02
|-
+
| rowspan="6"| [https://www.yeastgenome.org/locus/YAL062W YAL062W], [https://www.yeastgenome.org/locus/YAL063C YAL063C]
| || ||29289||29289||Deletion||A||
+
| 29254
|-
+
| 29254
| || ||29290||29290||Deletion||A||
+
| Deletion
|-
+
| A
| || ||29291||29291||Deletion||T||
+
|  
|-
+
|-style="height:30px; width:30px; text-align:center;"
| || ||29307||29307||Deletion||A||
+
| 29289
|-
+
| 29289
| || ||29301||29301||Substitution||T||A
+
| Deletion
 +
| A
 +
|  
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 29290
 +
| 29290
 +
| Deletion
 +
| A
 +
|  
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 29291
 +
| 29291
 +
| Deletion
 +
| T
 +
|  
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 29307
 +
| 29307
 +
| Deletion
 +
| A
 +
|  
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 29301
 +
| 29301
 +
| Substitution
 +
| T
 +
| A
 
|-
 
|-
 
| || colspan="6" |The following changes were made to the systematic sequence of Chromosome I in the region encompassing features FLO9/[https://www.yeastgenome.org/locus/YAL063C YAL063C] and GDH3/[https://www.yeastgenome.org/locus/YAL062W YAL062W]: deletion of the A at 29254, deletion of AAT at 29289-29291, transversion of T to A at 29301, and deletion of the A at 29307.
 
| || colspan="6" |The following changes were made to the systematic sequence of Chromosome I in the region encompassing features FLO9/[https://www.yeastgenome.org/locus/YAL063C YAL063C] and GDH3/[https://www.yeastgenome.org/locus/YAL062W YAL062W]: deletion of the A at 29254, deletion of AAT at 29289-29291, transversion of T to A at 29301, and deletion of the A at 29307.
Line 638: Line 1,230:
 
           ||||||||  ||||||||| ||||| |||||||||||||||||||||||||||||||||
 
           ||||||||  ||||||||| ||||| |||||||||||||||||||||||||||||||||
 
New: 29280 GATCCTTT---TTTTTTTGAAGAAAA-GGCAGCCAAGTTACGTCATAGAGAAAACTCCCT 29335</pre>
 
New: 29280 GATCCTTT---TTTTTTTGAAGAAAA-GGCAGCCAAGTTACGTCATAGAGAAAACTCCCT 29335</pre>
|-
+
|- style="height:30px; width:30px; text-align:center;"
|1998-09-02||[https://www.yeastgenome.org/locus/YAR060C YAR060C], [https://www.yeastgenome.org/locus/YARCdelta8 YARCdelta8]||210810||210810||Substitution||T||A
+
| rowspan="3"| 1998-09-02
|-
+
| rowspan="3"| [https://www.yeastgenome.org/locus/YAR060C YAR060C], [https://www.yeastgenome.org/locus/YARCdelta8 YARCdelta8]
| || ||211011||211011||Substitution||C||T
+
| 210810
|-
+
| 210810
| || ||210804||210804||Deletion||T||
+
| Substitution
 +
| T
 +
| A
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 211011
 +
| 211011
 +
| Substitution
 +
| C
 +
| T
 +
|-style="height:30px; width:30px; text-align:center;"
 +
| 210804
 +
| 210804
 +
| Deletion
 +
| T
 +
|  
 
|-
 
|-
 
| || colspan="6" |The following changes were made to the systematic sequence of Chromosome I in the region encompassing features [https://www.yeastgenome.org/locus/YARCdelta8 YARCdelta8] and [https://www.yeastgenome.org/locus/YAR060C YAR060C]: deletion of the T at 210804, transversion of T to A at 210810, and transition of C to T at 211011.
 
| || colspan="6" |The following changes were made to the systematic sequence of Chromosome I in the region encompassing features [https://www.yeastgenome.org/locus/YARCdelta8 YARCdelta8] and [https://www.yeastgenome.org/locus/YAR060C YAR060C]: deletion of the T at 210804, transversion of T to A at 210810, and transition of C to T at 211011.
Line 652: Line 1,258:
 
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
 
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
 
New: 210955 GCCCTTCTACGGCTTCTTCTAACCAATTGTTCCCCGTGAGTTGCTTTCTCTGAAAACCTT 211014</pre>
 
New: 210955 GCCCTTCTACGGCTTCTTCTAACCAATTGTTCCCCGTGAGTTGCTTTCTCTGAAAACCTT 211014</pre>
|-
+
|- style="height:30px; width:30px; text-align:center;"
|1998-09-02||[https://www.yeastgenome.org/locus/YAR050W YAR050W]||203939||203939||Substitution||T||G
+
| 1998-09-02
 +
| [https://www.yeastgenome.org/locus/YAR050W YAR050W]
 +
| 203939
 +
| 203939
 +
| Substitution
 +
| T
 +
| G
 
|-
 
|-
 
| || colspan="6" |The following sequence change was made to the systematic sequence of Chromosome I within the ORF [https://www.yeastgenome.org/locus/YAR050W YAR050W]/FLO1: transversion of T to G at 203939.
 
| || colspan="6" |The following sequence change was made to the systematic sequence of Chromosome I within the ORF [https://www.yeastgenome.org/locus/YAR050W YAR050W]/FLO1: transversion of T to G at 203939.
Line 662: Line 1,274:
  
 
=Annotation Changes=
 
=Annotation Changes=
{| class="wikitable" style="border-spacing: 2px; border: 1px solid darkgray;"
+
{| border="1" style="border-collapse:collapse; width:90%" cellpadding="6"
! Date !! Affected Features
+
! Date !! Affected Features  
|-
 
|2014-11-18||[https://www.yeastgenome.org/locus/ARS104 ARS104], [https://www.yeastgenome.org/locus/ARS106 ARS106], [https://www.yeastgenome.org/locus/ARS107 ARS107], [https://www.yeastgenome.org/locus/ARS110 ARS110], [https://www.yeastgenome.org/locus/ARS111 ARS111]
 
 
|-
 
|-
|colspan = '2' |As part of SGD's genome annotation revision R64.2, new ARS consensus sequences were annotated within the following ARS elements on Chromosome I based on Liachko et al. 2013: ARS104, ARS106, ARS107, ARS110, ARS111.
+
|2014-11-18
Liachko I, et al. (2013) High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast. Genome Res 23(4):698-704
+
|[https://www.yeastgenome.org/locus/ARS104 ARS104], [https://www.yeastgenome.org/locus/ARS106 ARS106], [https://www.yeastgenome.org/locus/ARS107 ARS107], [https://www.yeastgenome.org/locus/ARS110 ARS110], [https://www.yeastgenome.org/locus/ARS111 ARS111]<br>
 +
As part of SGD's genome annotation revision R64.2, new ARS consensus sequences were annotated within the following ARS elements on Chromosome I based on Liachko et al. 2013: ARS104, ARS106, ARS107, ARS110, ARS111.<br><br>
 +
'''Liachko I, et al.''' (2013) High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast. Genome Res 23(4):698-704. <br>
 +
[https://www.yeastgenome.org/reference/S000152760 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/23241746 PubMed] | [https://genome.cshlp.org/content/23/4/698 Full-Text] <br>
 
|-
 
|-
|2014-11-18||[https://www.yeastgenome.org/locus/ARS102 ARS102], [https://www.yeastgenome.org/locus/ARS105 ARS105], [https://www.yeastgenome.org/locus/ARS106 ARS106], [https://www.yeastgenome.org/locus/ARS108 ARS108]
+
|2014-11-18
 +
|[https://www.yeastgenome.org/locus/ARS102 ARS102], [https://www.yeastgenome.org/locus/ARS105 ARS105], [https://www.yeastgenome.org/locus/ARS106 ARS106], [https://www.yeastgenome.org/locus/ARS108 ARS108]<br>
 +
The chromosomal coordinates of the following ARS elements on Chromosome I were updated based on Liachko et al. 2013 as part of SGD's genome annotation revision R64.2: ARS102, ARS105, ARS106, ARS108.<br><br>
 +
'''Liachko I, et al.''' (2013) High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast. Genome Res 23(4):698-704. <br>
 +
[https://www.yeastgenome.org/reference/S000152760 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/23241746 PubMed] | [https://genome.cshlp.org/content/23/4/698 Full-Text] <br>
 
|-
 
|-
|colspan = '2' |The chromosomal coordinates of the following ARS elements on Chromosome I were updated based on Liachko et al. 2013 as part of SGD's genome annotation revision R64.2: ARS102, ARS105, ARS106, ARS108.
+
|2014-11-18
Liachko I, et al. (2013) High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast. Genome Res 23(4):698-704
+
|[https://www.yeastgenome.org/locus/YAR061W YAR061W], [https://www.yeastgenome.org/locus/YAR062W YAR062W]<br>
|-
+
As part of SGD's genome annotation revision R64.2, the two pseudogenes YAR061W + YAR062W have been combined into a single pseudogene, keeping the name YAR061W. This region is homologous to parts of FLO1/YAR050W and FLO9/YAL063C, but contains stop codons at several positions.<br><br>
|2014-11-18||[https://www.yeastgenome.org/locus/YAR061W YAR061W], [https://www.yeastgenome.org/locus/YAR062W YAR062W]
 
|-
 
|colspan = '2' |As part of SGD's genome annotation revision R64.2, the two pseudogenes YAR061W + YAR062W have been combined into a single pseudogene, keeping the name YAR061W. This region is homologous to parts of FLO1/YAR050W and FLO9/YAL063C, but contains stop codons at several positions.
 
 
Teunissen AW and Steensma HY (1995) Review: the dominant flocculation genes of Saccharomyces cerevisiae constitute a new subtelomeric gene family. Yeast 11(11):1001-13
 
Teunissen AW and Steensma HY (1995) Review: the dominant flocculation genes of Saccharomyces cerevisiae constitute a new subtelomeric gene family. Yeast 11(11):1001-13
 
|-
 
|-
|2007-05-08||[https://www.yeastgenome.org/locus/snR18 snR18]
+
|2007-05-08
 +
|[https://www.yeastgenome.org/locus/snR18 snR18]<br>
 +
Updated coordinates of snR18 based on GenBank U12981.<br><br>
 +
'''Hiraga SI, et al.''' (2012) TFIIIC localizes budding yeast ETC sites to the nuclear periphery. Mol Biol Cell 23(14):2741-54 <br>
 +
[https://www.yeastgenome.org/reference/S000149071 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/22496415 PubMed] | [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3395662 Full-Text]  
 
|-
 
|-
|colspan = '2' |Updated coordinates of snR18 based on GenBank U12981.
+
|2007-05-08
Hiraga K, et al. (1993) Cloning and characterization of the elongation factor EF-1 beta homologue of Saccharomyces cerevisiae. EF-1 beta is essential for growth. FEBS Lett 316(2):165-9
+
|[https://www.yeastgenome.org/locus/HRA1 HRA1]<br>
 +
Updated coordinates of HRA1 based on Yang & Altman 2007.<br><br>
 +
'''Yang L and Altman S''' (2007) A noncoding RNA in Saccharomyces cerevisiae is an RNase P substrate. RNA 13(5):682-90 <br>
 +
[https://www.yeastgenome.org/reference/S000121958 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/17379814 PubMed] | [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852816 Full-Text]
 
|-
 
|-
|2007-05-08||[https://www.yeastgenome.org/locus/HRA1 HRA1]
+
|2007-03-07
 +
|[https://www.yeastgenome.org/locus/ARS102 ARS102], [https://www.yeastgenome.org/locus/ARS103 ARS103], [https://www.yeastgenome.org/locus/ARS105 ARS105], [https://www.yeastgenome.org/locus/ARS108 ARS108], [https://www.yeastgenome.org/locus/ARS111 ARS111], [https://www.yeastgenome.org/locus/ARS112 ARS112]<br>
 +
The following ARS elements were added to the genome annotation on Chromosome I based on Xu et al. 2006: ARS102, ARS103, ARS105, ARS108, ARS111, ARS112.<br><br>
 +
'''Xu W, et al.''' (2006) Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae. BMC Genomics 7():276 <br>
 +
[https://www.yeastgenome.org/reference/S000119399 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/17067396 PubMed] | [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1657020 Full-Text]<br>
 
|-
 
|-
|colspan = '2' |Updated coordinates of HRA1 based on Yang & Altman 2007.
+
|2007-03-07
Yang L and Altman S (2007) A noncoding RNA in Saccharomyces cerevisiae is an RNase P substrate. RNA 13(5):682-90
+
|[https://www.yeastgenome.org/locus/ARS109 ARS109]<br>
 +
The ACS within ARS101/ARS109 at coordinates 159946-159936 was added based on Xu et al. 2006 and Theis & Newlon 2001.<br><br>
 +
'''Theis JF and Newlon CS''' (2001) Two compound replication origins in Saccharomyces cerevisiae contain redundant origin recognition complex binding sites. Mol Cell Biol 21(8):2790-801 <br>
 +
[https://www.yeastgenome.org/reference/S000060218 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/11283258 PubMed] | [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC86909 Full-Text] <br>
 +
'''Xu W, et al.''' (2006) Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae. BMC Genomics 7():276 <br>
 +
[https://www.yeastgenome.org/reference/S000119399 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/17067396 PubMed] | [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1657020 Full-Text]<br>
 
|-
 
|-
|2007-03-07||[https://www.yeastgenome.org/locus/ARS102 ARS102], [https://www.yeastgenome.org/locus/ARS103 ARS103], [https://www.yeastgenome.org/locus/ARS105 ARS105], [https://www.yeastgenome.org/locus/ARS108 ARS108], [https://www.yeastgenome.org/locus/ARS111 ARS111], [https://www.yeastgenome.org/locus/ARS112 ARS112]
+
|2007-02-06
 +
|[https://www.yeastgenome.org/locus/HRA1 HRA1]<br>
 +
This RNA gene, HRA1, was described by Samanta et al. (2006). Approximate start and stop coordinates, which are accurate to within 25 nucleotides, have been specified for this non-coding RNA. Many thanks to Manoj Samanta for alerting us to this noncoding RNA.<br><br>
 +
'''Samanta MP, et al.''' (2006) Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway. Proc Natl Acad Sci U S A 103(11):4192-7 <br>
 +
[https://www.yeastgenome.org/reference/S000114638 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/16537507 PubMed] | [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1389707 Full-Text]
 
|-
 
|-
|colspan = '2' |The following ARS elements were added to the genome annotation on Chromosome I based on Xu et al. 2006: ARS102, ARS103, ARS105, ARS108, ARS111, ARS112.
+
|2006-10-02
Xu W, et al. (2006) Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae. BMC Genomics 7():276
+
|[https://www.yeastgenome.org/locus/ARS109 ARS109]<br>
 +
An ARS Consensus Sequence (ACS) was added to ARS109 based on Nieduszynski et al. 2006.<br><br>
 +
'''Nieduszynski CA, et al.''' (2006) Genome-wide identification of replication origins in yeast by comparative genomics. Genes Dev 20(14):1874-9<br>
 +
[https://www.yeastgenome.org/reference/S000117321 SGD papers] | [https://www.ncbi.nlm.nih.gov/pubmed/16847347 PubMed Entry] | [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1522085 Full-Text] | [http://genesdev.cshlp.org/content/20/14/1874/suppl/DC1 Web Supplement]
 
|-
 
|-
|2007-03-07||[https://www.yeastgenome.org/locus/ARS109 ARS109]
+
|2006-09-06
 +
|[https://www.yeastgenome.org/locus/ARS104 ARS104], [https://www.yeastgenome.org/locus/ARS106 ARS106], [https://www.yeastgenome.org/locus/ARS107 ARS107]<br>
 +
The following ARS elements on Chromosome I were added to SGD based on Nieduszynski et al. 2006: ARS104, ARS106, ARS107.<br><br>
 +
'''Nieduszynski CA, et al.''' (2006) Genome-wide identification of replication origins in yeast by comparative genomics. Genes Dev 20(14):1874-9<br>
 +
[https://www.yeastgenome.org/reference/S000117321 SGD papers] | [https://www.ncbi.nlm.nih.gov/pubmed/16847347 PubMed Entry] | [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1522085 Full-Text] | [http://genesdev.cshlp.org/content/20/14/1874/suppl/DC1 Web Supplement]  
 
|-
 
|-
|colspan = '2' |The ACS within ARS101/ARS109 at coordinates 159946-159936 was added based on Xu et al. 2006 and Theis & Newlon 2001.
+
|2006-09-06
Theis JF and Newlon CS (2001) Two compound replication origins in Saccharomyces cerevisiae contain redundant origin recognition complex binding sites. Mol Cell Biol 21(8):2790-801
+
|[https://www.yeastgenome.org/locus/ARS109 ARS109], [https://www.yeastgenome.org/locus/ARS110 ARS110]<br>
Xu W, et al. (2006) Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae. BMC Genomics 7():276
+
Updated coordinates of the following ARS elements on Chromosome I based on Nieduszynski et al. 2006: ARS101/109, ARS110.<br><br>
 +
'''Nieduszynski CA, et al.''' (2006) Genome-wide identification of replication origins in yeast by comparative genomics. Genes Dev 20(14):1874-9<br>
 +
[https://www.yeastgenome.org/reference/S000117321 SGD papers] | [https://www.ncbi.nlm.nih.gov/pubmed/16847347 PubMed Entry] | [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1522085 Full-Text] | [http://genesdev.cshlp.org/content/20/14/1874/suppl/DC1 Web Supplement]
 
|-
 
|-
|2007-02-06||[https://www.yeastgenome.org/locus/HRA1 HRA1]
+
|2006-05-08
 +
|[https://www.yeastgenome.org/locus/CEN1 CEN1]<br>
 +
The previously annotated boundaries of CEN1 were adjusted to coincide with the 5' end of CDEI and the 3' end of CDEIII, to more accurately reflect current knowledge regarding centromere structure in Saccharomyces cerevisiae.<br><br>
 +
'''Wieland G, et al.''' (2001) Determination of the binding constants of the centromere protein Cbf1 to all 16 centromere DNAs of Saccharomyces cerevisiae. Nucleic Acids Res 29(5):1054-60 <br>
 +
[https://www.yeastgenome.org/reference/S000059647 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/11222754 PubMed] | [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC29730 Full-Text] <br>
 +
'''Espelin CW, et al.''' (2003) Binding of the essential Saccharomyces cerevisiae kinetochore protein Ndc10p to CDEII. Mol Biol Cell 14(11):4557-68 <br>
 +
[https://www.yeastgenome.org/reference/S000074756 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/13679521 PubMed] | [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC266772 Full-Text]
 
|-
 
|-
|colspan = '2' |This RNA gene, HRA1, was described by Samanta et al. (2006). Approximate start and stop coordinates, which are accurate to within 25 nucleotides, have been specified for this non-coding RNA. Many thanks to Manoj Samanta for alerting us to this noncoding RNA.
+
|2006-02-28
Samanta MP, et al. (2006) Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway. Proc Natl Acad Sci U S A 103(11):4192-7
+
|[https://www.yeastgenome.org/locus/ARS110 ARS110]<br>
 +
This ARS element ARS110 was added to the genome annotation based on Wyrick et al. 2001 and Dimock et al. 1984.<br><br>
 +
'''Dimock K, et al.''' (1984) Molecular cloning of the ADE1 gene of Saccharomyces cerevisiae and stability of the transformants. Gene 27(2):233-7 <br>
 +
[https://www.yeastgenome.org/reference/S000040578 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/6373504 PubMed] | [https://www.sciencedirect.com/science/article/pii/0378111984901446?via%3Dihub Full-Text] <br>
 +
'''Wyrick JJ, et al.''' (2001) Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins. Science 294(5550):2357-60 <br>
 +
[https://www.yeastgenome.org/reference/S000069019 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/11743203 PubMed] | [https://science.sciencemag.org/content/294/5550/2357 Full-Text] | [http://yfgdb.princeton.edu/cgi-bin/display.cgi?id=11743203&db=pmid YFGdb] | [https://www.ncbi.nlm.nih.gov/pubmed/11743187 Comments & Errata]
 
|-
 
|-
|2006-10-02||[https://www.yeastgenome.org/locus/ARS109 ARS109]
+
|2004-10-18
|-
+
|[https://www.yeastgenome.org/locus/ARS109 ARS109]<br>
|colspan = '2' |An ARS Consensus Sequence (ACS) was added to ARS109 based on Nieduszynski et al. 2006.
+
ARS101 was added to SGD based on Theis and Newlon 2001 and Wyrick et al. 2001.<br><br>
Nieduszynski CA, et al. (2006) Genome-wide identification of replication origins in yeast by comparative genomics. Genes Dev 20(14):1874-9
 
|-
 
|2006-09-06||[https://www.yeastgenome.org/locus/ARS104 ARS104], [https://www.yeastgenome.org/locus/ARS106 ARS106], [https://www.yeastgenome.org/locus/ARS107 ARS107]
 
|-
 
|colspan = '2' |The following ARS elements on Chromosome I were added to SGD based on Nieduszynski et al. 2006: ARS104, ARS106, ARS107.
 
Nieduszynski CA, et al. (2006) Genome-wide identification of replication origins in yeast by comparative genomics. Genes Dev 20(14):1874-9
 
|-
 
|2006-09-06||[https://www.yeastgenome.org/locus/ARS109 ARS109], [https://www.yeastgenome.org/locus/ARS110 ARS110]
 
|-
 
|colspan = '2' |Updated coordinates of the following ARS elements on Chromosome I based on Nieduszynski et al. 2006: ARS101/109, ARS110.
 
Nieduszynski CA, et al. (2006) Genome-wide identification of replication origins in yeast by comparative genomics. Genes Dev 20(14):1874-9
 
|-
 
|2006-05-08||[https://www.yeastgenome.org/locus/CEN1 CEN1]
 
|-
 
|colspan = '2' |The previously annotated boundaries of CEN1 were adjusted to coincide with the 5' end of CDEI and the 3' end of CDEIII, to more accurately reflect current knowledge regarding centromere structure in Saccharomyces cerevisiae.
 
Wieland G, et al. (2001) Determination of the binding constants of the centromere protein Cbf1 to all 16 centromere DNAs of Saccharomyces cerevisiae. Nucleic Acids Res 29(5):1054-60
 
Espelin CW, et al. (2003) Binding of the essential Saccharomyces cerevisiae kinetochore protein Ndc10p to CDEII. Mol Biol Cell 14(11):4557-68
 
|-
 
|2006-02-28||[https://www.yeastgenome.org/locus/ARS110 ARS110]
 
|-
 
|colspan = '2' |This ARS element ARS110 was added to the genome annotation based on Wyrick et al. 2001 and Dimock et al. 1984.
 
Dimock K, et al. (1984) Molecular cloning of the ADE1 gene of Saccharomyces cerevisiae and stability of the transformants. Gene 27(2):233-7
 
Wyrick JJ, et al. (2001) Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins. Science 294(5550):2357-60
 
|-
 
|2004-10-18||[https://www.yeastgenome.org/locus/ARS109 ARS109]
 
|-
 
|colspan = '2' |ARS101 was added to SGD based on Theis and Newlon 2001 and Wyrick et al. 2001.
 
 
Theis JF and Newlon CS (2001) Two compound replication origins in Saccharomyces cerevisiae contain redundant origin recognition complex binding sites. Mol Cell Biol 21(8):2790-801
 
Theis JF and Newlon CS (2001) Two compound replication origins in Saccharomyces cerevisiae contain redundant origin recognition complex binding sites. Mol Cell Biol 21(8):2790-801
Wyrick JJ, et al. (2001) Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins. Science 294(5550):2357-60
+
'''Wyrick JJ, et al.''' (2001) Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins. Science 294(5550):2357-60 <br>
|-
+
[https://www.yeastgenome.org/reference/S000069019 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/11743203 PubMed] | [https://science.sciencemag.org/content/294/5550/2357 Full-Text] | [http://yfgdb.princeton.edu/cgi-bin/display.cgi?id=11743203&db=pmid YFGdb] | [https://www.ncbi.nlm.nih.gov/pubmed/11743187 Comments & Errata]
|2004-10-12||[https://www.yeastgenome.org/locus/CEN1 CEN1]
 
|-
 
|colspan = '2' |Centromeric DNA elements CDEI, CDEII, and CDEIII were annotated based on Wieland et al. 2001 and Espelin et al. 2003.
 
Wieland G, et al. (2001) Determination of the binding constants of the centromere protein Cbf1 to all 16 centromere DNAs of Saccharomyces cerevisiae. Nucleic Acids Res 29(5):1054-60
 
Espelin CW, et al. (2003) Binding of the essential Saccharomyces cerevisiae kinetochore protein Ndc10p to CDEII. Mol Biol Cell 14(11):4557-68
 
|-
 
|2003-09-22||[https://www.yeastgenome.org/locus/YAL044C YAL044C]
 
|-
 
|colspan = '2' |The start site of GCV3/YAL044C was moved 21 nt (7 codons) downstream, based on the automated comparison of closely-related Saccharomyces species by Kellis et al. 2003. The numbering for both the nucleotides in the DNA coding sequence and the amino acids in the predicted protein have been updated. Evidence supporting this change includes: 1) This is the predicted start methionine in the majority of Saccharomyces species orthologs analyzed by Kellis et al. and/or Cliften et al.; 2) Significant sequence conservation begins abruptly at this predicted start methionine.
 
Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54
 
Cliften P, et al. (2003) Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301(5629):71-6
 
|-
 
|2003-09-22||[https://www.yeastgenome.org/locus/YAL034C YAL034C]
 
|-
 
|colspan = '2' |The start site of FUN19/YAL034C was moved 150 nt (50 codons) downstream, based on the automated comparison of closely-related Saccharomyces species by Kellis et al. 2003. The numbering for both the nucleotides in the DNA coding sequence and the amino acids in the predicted protein have been updated. Evidence supporting this change includes: 1) This is the predicted start methionine in the majority of Saccharomyces species orthologs analyzed by Kellis et al. and/or Cliften et al.; 2) Significant sequence conservation begins abruptly at this predicted start methionine.
 
Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54
 
Cliften P, et al. (2003) Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301(5629):71-6
 
|-
 
|2003-09-22||[https://www.yeastgenome.org/locus/YAL011W YAL011W]
 
|-
 
|colspan = '2' |The start site of YAL011W was moved 39 nt (13 codons) downstream, based on the automated comparison of closely-related Saccharomyces species by Kellis et al. 2003. The numbering for both the nucleotides in the DNA coding sequence and the amino acids in the predicted protein have been updated. Evidence supporting this change includes: 1) This is the predicted start methionine in the majority of Saccharomyces species orthologs analyzed by Kellis et al. and/or Cliften et al.; 2) Significant sequence conservation begins abruptly at this predicted start methionine.
 
Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54
 
Cliften P, et al. (2003) Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301(5629):71-6
 
|-
 
|2003-09-09||[https://www.yeastgenome.org/locus/TEL01L TEL01L], [https://www.yeastgenome.org/locus/TEL01R TEL01R]
 
|-
 
|colspan = '2' |The chromosomal locations for the following telomeric features on Chromosome I were generously provided by Ed Louis and Dave Barton (University of Leicester, UK): TEL01L, TEL01L-TR, TEL01L-XC, TEL01L-XR, TEL01R, TEL01R-TR, and TEL01R-XC.
 
|-
 
|2003-07-29||[https://www.yeastgenome.org/locus/YAL016C-B YAL016C-B]
 
 
|-
 
|-
|colspan = '2' |Thanks to Kessler et al. 2003 for providing the coordinates of ORF YAL016C-B on Chromosome I.
+
|2004-10-12
Kessler MM, et al. (2003) Systematic discovery of new genes in the Saccharomyces cerevisiae genome. Genome Res 13(2):264-71
+
|[https://www.yeastgenome.org/locus/CEN1 CEN1]<br>
 +
Centromeric DNA elements CDEI, CDEII, and CDEIII were annotated based on Wieland et al. 2001 and Espelin et al. 2003.<br><br>
 +
'''Wieland G, et al.''' (2001) Determination of the binding constants of the centromere protein Cbf1 to all 16 centromere DNAs of Saccharomyces cerevisiae. Nucleic Acids Res 29(5):1054-60 <br>
 +
[https://www.yeastgenome.org/reference/S000059647 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/11222754 PubMed] | [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC29730 Full-Text] <br>
 +
'''Espelin CW, et al.''' (2003) Binding of the essential Saccharomyces cerevisiae kinetochore protein Ndc10p to CDEII. Mol Biol Cell 14(11):4557-68 <br>
 +
[https://www.yeastgenome.org/reference/S000074756 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/13679521 PubMed] | [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC266772 Full-Text]
 
|-
 
|-
|2003-07-29||[https://www.yeastgenome.org/locus/YAL037C-B YAL037C-B], [https://www.yeastgenome.org/locus/YAL067W-A YAL067W-A], [https://www.yeastgenome.org/locus/YAL068W-A YAL068W-A], [https://www.yeastgenome.org/locus/YAR035C-A YAR035C-A]
+
|2003-09-22
 +
|[https://www.yeastgenome.org/locus/YAL044C YAL044C]<br>
 +
The start site of GCV3/YAL044C was moved 21 nt (7 codons) downstream, based on the automated comparison of closely-related Saccharomyces species by Kellis et al. 2003. The numbering for both the nucleotides in the DNA coding sequence and the amino acids in the predicted protein have been updated. Evidence supporting this change includes: 1) This is the predicted start methionine in the majority of Saccharomyces species orthologs analyzed by Kellis et al. and/or Cliften et al.; 2) Significant sequence conservation begins abruptly at this predicted start methionine.<br><br>
 +
'''Kellis M, et al.''' (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54. <br>
 +
[https://www.yeastgenome.org/reference/S000073327 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/12748633 PubMed] | [https://www.nature.com/articles/nature01644 Full-Text] | [https://www.yeastgenome.org/reference/S000140268 Comments Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54 Errata] <br>
 +
'''Cliften P, et al.''' (2003) Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301(5629):71-6. <br>
 +
[https://www.yeastgenome.org/reference/S000073948 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/12775844 PubMed] | [https://science.sciencemag.org/content/301/5629/71.long Full-Text] | [https://science.sciencemag.org/content/suppl/2003/07/03/1084337.DC1 Web Supplement] <br>
 
|-
 
|-
|colspan = '2' |Thanks to Kumar et al. 2002 for providing the coordinates of the following ORFs on Chromosome I: YAL037C-B, YAL067W-A, YAL068W-A, YAR035C-A.
+
|2003-09-22
Kumar A, et al. (2002) An integrated approach for finding overlooked genes in yeast. Nat Biotechnol 20(1):58-63
+
|[https://www.yeastgenome.org/locus/YAL034C YAL034C]<br>
 +
The start site of FUN19/YAL034C was moved 150 nt (50 codons) downstream, based on the automated comparison of closely-related Saccharomyces species by Kellis et al. 2003. The numbering for both the nucleotides in the DNA coding sequence and the amino acids in the predicted protein have been updated. Evidence supporting this change includes: 1) This is the predicted start methionine in the majority of Saccharomyces species orthologs analyzed by Kellis et al. and/or Cliften et al.; 2) Significant sequence conservation begins abruptly at this predicted start methionine.<br><br>
 +
'''Kellis M, et al.''' (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54. <br>
 +
[https://www.yeastgenome.org/reference/S000073327 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/12748633 PubMed] | [https://www.nature.com/articles/nature01644 Full-Text] | [https://www.yeastgenome.org/reference/S000140268 Comments Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54 Errata] <br>
 +
'''Cliften P, et al.''' (2003) Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301(5629):71-6. <br>
 +
[https://www.yeastgenome.org/reference/S000073948 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/12775844 PubMed] | [https://science.sciencemag.org/content/301/5629/71.long Full-Text] | [https://science.sciencemag.org/content/suppl/2003/07/03/1084337.DC1 Web Supplement] <br>
 
|-
 
|-
|2003-07-29||[https://www.yeastgenome.org/locus/YAL016C-A YAL016C-A], [https://www.yeastgenome.org/locus/YAL019W-A YAL019W-A], [https://www.yeastgenome.org/locus/YAL026C-A YAL026C-A], [https://www.yeastgenome.org/locus/YAL031W-A YAL031W-A], [https://www.yeastgenome.org/locus/YAL037C-A YAL037C-A], [https://www.yeastgenome.org/locus/YAL047W-A YAL047W-A], [https://www.yeastgenome.org/locus/YAL059C-A YAL059C-A], [https://www.yeastgenome.org/locus/YAR019W-A YAR019W-A]
+
|2003-09-22
 +
|[https://www.yeastgenome.org/locus/YAL011W YAL011W]<br>
 +
The start site of YAL011W was moved 39 nt (13 codons) downstream, based on the automated comparison of closely-related Saccharomyces species by Kellis et al. 2003. The numbering for both the nucleotides in the DNA coding sequence and the amino acids in the predicted protein have been updated. Evidence supporting this change includes: 1) This is the predicted start methionine in the majority of Saccharomyces species orthologs analyzed by Kellis et al. and/or Cliften et al.; 2) Significant sequence conservation begins abruptly at this predicted start methionine.<br><br>
 +
'''Kellis M, et al.''' (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54. <br>
 +
[https://www.yeastgenome.org/reference/S000073327 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/12748633 PubMed] | [https://www.nature.com/articles/nature01644 Full-Text] | [https://www.yeastgenome.org/reference/S000140268 Comments Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54 Errata] <br>
 +
'''Cliften P, et al.''' (2003) Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301(5629):71-6. <br>
 +
[https://www.yeastgenome.org/reference/S000073948 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/12775844 PubMed] | [https://science.sciencemag.org/content/301/5629/71.long Full-Text] | [https://science.sciencemag.org/content/suppl/2003/07/03/1084337.DC1 Web Supplement] <br>
 
|-
 
|-
|colspan = '2' |Thanks to MIPS for providing the coordinates of the following ORFs on Chromosome I: YAL016C-A, YAL019W-A, YAL026C-A, YAL031W-A, YAL037C-A, YAL047W-A, YAL059C-A, and YAR019W-A.
+
|2003-09-09
 +
|[https://www.yeastgenome.org/locus/TEL01L TEL01L], [https://www.yeastgenome.org/locus/TEL01R TEL01R]<br>
 +
The chromosomal locations for the following telomeric features on Chromosome I were generously provided by Ed Louis and Dave Barton (University of Leicester, UK): TEL01L, TEL01L-TR, TEL01L-XC, TEL01L-XR, TEL01R, TEL01R-TR, and TEL01R-XC.<br><br>
 
|-
 
|-
|2003-07-29||[https://www.yeastgenome.org/locus/YAL063C-A YAL063C-A]
+
|2003-07-29
 +
|[https://www.yeastgenome.org/locus/YAL016C-B YAL016C-B]<br>
 +
Thanks to Kessler et al. 2003 for providing the coordinates of ORF YAL016C-B on Chromosome I.<br><br>
 +
'''Kessler MM, et al.''' (2003) Systematic discovery of new genes in the Saccharomyces cerevisiae genome. Genome Res 13(2):264-71. <br>
 +
[https://www.yeastgenome.org/reference/S000073671 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/12566404 PubMed] | [https://genome.cshlp.org/content/13/2/264.long Full-Text] <br>
 
|-
 
|-
|colspan = '2' |Thanks to Oshiro et al., Velculescu et al., and Basrai et al. for providing the coordinates of ORF YAL063C-A on Chromosome I.
+
|2003-07-29
Basrai MA, et al. (1999) NORF5/HUG1 is a component of the MEC1-mediated checkpoint response to DNA damage and replication arrest in Saccharomyces cerevisiae. Mol Cell Biol 19(10):7041-9
+
|[https://www.yeastgenome.org/locus/YAL037C-B YAL037C-B], [https://www.yeastgenome.org/locus/YAL067W-A YAL067W-A], [https://www.yeastgenome.org/locus/YAL068W-A YAL068W-A], [https://www.yeastgenome.org/locus/YAR035C-A YAR035C-A]<br>
Velculescu VE, et al. (1997) Characterization of the yeast transcriptome. Cell 88(2):243-51
+
Thanks to Kumar et al. 2002 for providing the coordinates of the following ORFs on Chromosome I: YAL037C-B, YAL067W-A, YAL068W-A, YAR035C-A.<br><br>
Oshiro G, et al. (2002) Parallel identification of new genes in Saccharomyces cerevisiae. Genome Res 12(8):1210-20
+
'''Kumar A, et al.''' (2002) An integrated approach for finding overlooked genes in yeast. Nat Biotechnol 20(1):58-63. <br>
 +
[https://www.yeastgenome.org/reference/S000073673 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/11753363 PubMed] | [https://www.nature.com/articles/nbt0102-58 Full-Text] | [http://yfgdb.princeton.edu/cgi-bin/display.cgi?id=11753363&db=pmid YFGdb] | [https://www.yeastgenome.org/reference/S000141796 Comments & Errata] <br>
 
|-
 
|-
|2001-01-30||[https://www.yeastgenome.org/locus/YAL044W-A YAL044W-A]
+
|2003-07-29
 +
|[https://www.yeastgenome.org/locus/YAL016C-A YAL016C-A], [https://www.yeastgenome.org/locus/YAL019W-A YAL019W-A], [https://www.yeastgenome.org/locus/YAL026C-A YAL026C-A], [https://www.yeastgenome.org/locus/YAL031W-A YAL031W-A], [https://www.yeastgenome.org/locus/YAL037C-A YAL037C-A], [https://www.yeastgenome.org/locus/YAL047W-A YAL047W-A], [https://www.yeastgenome.org/locus/YAL059C-A YAL059C-A], [https://www.yeastgenome.org/locus/YAR019W-A YAR019W-A]<br>
 +
Thanks to MIPS for providing the coordinates of the following ORFs on Chromosome I: YAL016C-A, YAL019W-A, YAL026C-A, YAL031W-A, YAL037C-A, YAL047W-A, YAL059C-A, and YAR019W-A.<br><br>
 
|-
 
|-
|colspan = '2' |ORF added based on similarity to an S. pombe gene (information submitted by Valerie Wood).
+
|2003-07-29
 +
|[https://www.yeastgenome.org/locus/YAL063C-A YAL063C-A]<br>
 +
Thanks to Oshiro et al., Velculescu et al., and Basrai et al. for providing the coordinates of ORF YAL063C-A on Chromosome I.<br><br>
 +
'''Basrai MA, et al.''' (1999) NORF5/HUG1 is a component of the MEC1-mediated checkpoint response to DNA damage and replication arrest in Saccharomyces cerevisiae. Mol Cell Biol 19(10):7041-9 <br>
 +
[https://www.yeastgenome.org/reference/S000042214 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/10490641 PubMed] | [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC84699 Full-Text] <br>
 +
'''Velculescu VE, et al.''' (1997) Characterization of the yeast transcriptome. Cell 88(2):243-51. <br>
 +
[https://www.yeastgenome.org/reference/S000058021 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/9008165 PubMed] | [https://www.sciencedirect.com/science/article/pii/S0092867400818450?via%3Dihub Full-Text] | [http://yfgdb.princeton.edu/cgi-bin/display.cgi?id=9008165&db=pmid YFGdb] <br>
 +
'''Oshiro G, et al.''' (2002) Parallel identification of new genes in Saccharomyces cerevisiae. Genome Res 12(8):1210-20. <br>
 +
[https://www.yeastgenome.org/reference/S000073672 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/12176929 PubMed] | [https://genome.cshlp.org/content/12/8/1210.long Full-Text] | [https://genome.cshlp.org/content/12/8/1210/suppl/DC1 Web Supplement] | [http://yfgdb.princeton.edu/cgi-bin/display.cgi?id=12176929&db=pmid YFGdb] <br>
 
|-
 
|-
|1999-07-17||[https://www.yeastgenome.org/locus/YAR043C YAR043C], [https://www.yeastgenome.org/locus/YAR052C YAR052C], [https://www.yeastgenome.org/locus/YAR074C YAR074C]
+
|2001-01-30
 +
|[https://www.yeastgenome.org/locus/YAL044W-A YAL044W-A]<br>
 +
ORF added based on similarity to an S. pombe gene (information submitted by Valerie Wood).<br><br>
 
|-
 
|-
|colspan = '2' |Deleted ORF, does not encode a protein; this putative ORF was included in the original annotation of Chromosome I but was later withdrawn
+
|1999-07-17
 +
|[https://www.yeastgenome.org/locus/YAR043C YAR043C], [https://www.yeastgenome.org/locus/YAR052C YAR052C], [https://www.yeastgenome.org/locus/YAR074C YAR074C]<br>
 +
Deleted ORF, does not encode a protein; this putative ORF was included in the original annotation of Chromosome I but was later withdrawn<br><br>
 
|}
 
|}

Latest revision as of 16:42, 2 October 2019

This page lists all sequence and annotation changes that have been made to the Chromosome I systematic reference sequence since its intial release on 1996-07-31.

  • The sequence of Chromosome I has been updated 115 times, affecting 55 features.
  • The annotation of Chromosome I has been updated 25 times, affecting 39 features.

Current and past versions can be obtained from SGD's Download site.


Sequence Changes

Date Affected Features Start Coordinate of Change End Coordinate of Change Type of Change Old Sequence New Sequence
2011-02-03 YAL013W 130485 130486 Deletion GT
Two nucleotides were deleted near the 3' end of ORF DEP1/YAL013W, altering its coding sequence. The start and most of the reading frame remain the same, but the C-terminus has changed and the annotated protein is now 15 amino acids shorter.
New    130445  AGACTCCGAAATCAACGACGACTTCCACCAGTGGGCCCA--GTGACCGCCACACTGGACC  130502
               |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Old    130446  AGACTCCGAAATCAACGACGACTTCCACCAGTGGGCCCAGTGTGACCGCCACACTGGACC  130505

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAR019W-A 175305 175305 Insertion C
A single C nucleotide was inserted very near the 3' end of ORF YAR019W-A, altering its coding sequence. The start and most of the reading frame remain the same, but the C-terminus has changed and the annotated protein is now 4 amino acids shorter.
New    175295  GGCACAGCAAAGTCCGCACAGAGCACTACAGTATAGCATAGAGTGCTAATGAGTTGATAG  175354
               ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Old    175293  GGCACAGCAAAGT-CGCACAGAGCACTACAGTATAGCATAGAGTGCTAATGAGTTGATAG  175351

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAL064W 21531 21531 Insertion A
A single A nucleotide was inserted within ORF YAL064W, near its 5' end, moving the start codon out of frame with the rest of the protein. The C-terminus and majority of the reading frame remain the same, but the N-terminus has changed and the annotated protein is now 14 amino acids shorter.
New    21487   CTATCGATGTGTATACAAACGTACTTCAAATAAGCAATGCGAATATACTGCAACTTTTCG  21546
               |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Old    21490   CTATCGATGTGTATACAAACGTACTTCAAATAAGCAATGCGA-TATACTGCAACTTTTCG  21548

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAR014C 167048 167048 Substitution G C
167084 167084 Insertion C
167113 167113 Insertion T
167133 167133 Insertion A
167138 167138 Insertion T
167142 167142 Insertion A
167149 167149 Insertion T
167551 167551 Substitution G C
167802 167802 Substitution C T
Six separate single nucleotides were inserted within ORF BUD14/YAR014C, and three single nucleotide substitutions were also made, altering its coding sequence. The start, stop, and majority of the reading frame remain the same, but the annotated protein is now two amino acids longer and a small section of the protein sequence is now different.
New    167033  GTCAGTTTGATTTGCCATTCCTCCACTAGACCCCAAGCTGGCTTGAATTTGCCCCTCTGT  167092
               |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Old    167034  GTCAGTTTGATTTGGCATTCCTCCACTAGACCCCAAGCTGGCTTGAATTTG-CCCTCTGT  167092

New    167093  GTTTTCCACGTTTGTTGTCTCTTCAATTTTCGATTTTGCATGAATATATTGTGAAATGTC  167152
               ||||||||||||||||||||| |||||||||||||||||||| ||||| |||| ||||||
Old    167093  GTTTTCCACGTTTGTTGTCTC-TCAATTTTCGATTTTGCATG-ATATA-TGTG-AATGTC  167148

New    167153  CTTTATTGCTCTAGATGATGGAATACTGCTGCTTTCTTCAACTATTGGAGTGGATGGTGA  167212
               | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Old    167149  C-TTATTGCTCTAGATGATGGAATACTGCTGCTTTCTTCAACTATTGGAGTGGATGGTGA  167207

New    167513  GACGTCGCTCACTACATCGCTCGTATCATCATCCTGGAATTTGCCAAAATTTAACTTCGC  167572
               ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Old    167508  GACGTCGCTCACTACATCGCTCGTATCATCATCCTGGAATTTGGCAAAATTTAACTTCGC  167567

New    167763  TATCCATTCAGTGCAGGTGTCGGAATTATACTCTCTGCATCACTTTGATTCTTGTTACCA  167822
               |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Old    167758  TATCCATTCAGTGCAGGTGTCGGAATTATACTCTCTGCATCACTCTGATTCTTGTTACCA  167817

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAL051W 48772 48772 Substitution T A
49904 49904 Substitution C A
50327 50327 Substitution C A
Nucleotide changes within the coding region of OAF1/YAL051W resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 70 is now Arginine rather than Tryptophan, residue 447 is now Glutamine rather than Proline, and residue 588 is now Lysine rather than Threonine.
New    48726   CATAATAGGAAAAGAAATAGAATATTGTTTGTCTGCCAGGCTTGTAGGAAGTCAAAAACA  48785
               ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Old    48727   CATAATAGGAAAAGAAATAGAATATTGTTTGTCTGCCAGGCTTGTTGGAAGTCAAAAACA  48786

New    49856   AATAATTGATAAATACCCAATACCGAACGATTTTATTTTATTGAGTCAAAGATGTCTAGC  49915
               ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Old    49857   AATAATTGATAAATACCCAATACCGAACGATTTTATTTTATTGAGTCCAAGATGTCTAGC  49916

New    50286   AACCGAGTTAGGGGCGATCTAAGCGATATCAATAATCACAAACTTTTGAGAATTCATAAA  50345
               |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Old    50287   AACCGAGTTAGGGGCGATCTAAGCGATATCAATAATCACACACTTTTGAGAATTCATAAA  50346

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAL053W 46231 46231 Substitution C G
46833 46833 Substitution G A
47821 47821 Substitution T A
47826 47826 Substitution C T
Nucleotide changes within the coding region of FLC2/YAL053W resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 111 is now Cysteine rather than Serine, residue 312 is now Asparagine rather than Aspartic Acid, and residues 641-643 are now NDS rather than IDP.
New    46196   TTTGATTTATGTTCCTTGGGCCAAGTATCGCTTTGCCCCCTAAGTGCTGGGCGTATTGAT  46255
               |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Old    46197   TTTGATTTATGTTCCTTGGGCCAAGTATCGCTTTCCCCCCTAAGTGCTGGGCGTATTGAT  46256

New    46796   AGTGATTACAATTTTGACACCATTTTAGACGATTCGAATCTGTACACCACTTCTGAGAAG  46855
               |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Old    46797   AGTGATTACAATTTTGACACCATTTTAGACGATTCGGATCTGTACACCACTTCTGAGAAG  46856

New    47806   TGGCAAAAACAAAAATGATTCTGAACTGTTTGAATTGAGAAAAGCTGTTATGGACACCAA  47865
               |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Old    47807   TGGCAAAAACAAAATTGATCCTGAACTGTTTGAATTGAGAAAAGCTGTTATGGACACCAA  47866

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAR023C 179683 179683 Substitution T A
179761 179761 Substitution C A
The substitution of two nucleotides within the coding region of YAR023C resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 20 is now Phenylalanine rather than Valine, and residue 46 is now Phenylalanine rather than Isoleucine.
New    179672  ATTGGTCTACTGAATGACCATATCTGAAGGACTACCATAGAGCCACCTAAACATATCCGG  179731
               ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Old    179670  ATTGGTCTACTGATTGACCATATCTGAAGGACTACCATAGAGCCACCTAAACATATCCGG  179729

New    179732  ATCACCATGGCAGGGGAGAGAACACCAGAAAACCAAATGTTTGTTAAAGTCGCCAAAATC  179791
               ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Old    179730  ATCACCATGGCAGGGGAGAGAACACCAGAAACCCAAATGTTTGTTAAAGTCGCCAAAATC  179789

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAL026C 96838 96838 Deletion C
98350 98351 Substitution CG GC
97678 97679 Substitution CC GG
97025 97026 Substitution AT TA
99563 99565 Substitution ATC TCG
96740 96740 Substitution G C
96841 96841 Insertion C
Nucleotide changes within the coding region of DRS2/YAL026C resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residues 45-46 are now AN rather than GY, residue 450 is now Alanine rather than Arginine, residue 674 is now Proline rather than Glycine, residues 891-892 are now NT rather than KS, residues 953-954 are now GD rather than AS, and residue 987 is now Valine rather than Leucine.
New    96716   TTTTAAAAATTTAAATTGGCCAACAGCTATATCAGCTGAACGAGCCGCTTGCATACCTTC  96775
               ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Old    96717   TTTTAAAAATTTAAATTGGCCAAGAGCTATATCAGCTGAACGAGCCGCTTGCATACCTTC  96776

New    96826   CGTTGGCACCA-TCGCCAATGGCTAGCAGTAGTGAAGACGACTTTCTTTTTACCATTTTA  96884
               ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Old    96827   CGTTGGCACCACTCG-CAATGGCTAGCAGTAGTGAAGACGACTTTCTTTTTACCATTTTA  96885

New    97005   TCAATGACGAGCGCTAAGGTATTCATATCATGTGTTGACAATTGATGCTCGTTTAGAGCG  97064
               |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Old    97006   TCAATGACGAGCGCTAAGGATTTCATATCATGTGTTGACAATTGATGCTCGTTTAGAGCG  97065

New    97665   GTTACAGAGTTTGGTTTACGGATGATAAACTTATACCCTAAATCTGCACCACCTTGAACG  97724
               ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Old    97666   GTTACAGAGTTTCCTTTACGGATGATAAACTTATACCCTAAATCTGCACCACCTTGAACG  97725

New    98335   AAACTGTGAACAATGCAATAATCTGTCTGTTGATAATTTTCTCAACCGCGGTTCTTTTAA  98394
               ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Old    98336   AAACTGTGAACAATCGAATAATCTGTCTGTTGATAATTTTCTCAACCGCGGTTCTTTTAA  98395

New    99535   GAAGTACATGACTTGGTGGTATATAATTCGCGTTCGCATGTGAGTTGGTGACCTTTGAAC  99594
               |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||
Old    99536   GAAGTACATGACTTGGTGGTATATAATATCCGTTCGCATGTGAGTTGGTGACCTTTGAAC  99595

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAR019C 172425 172425 Insertion G
174173 174173 Substitution G C
174187 174188 Substitution CG GC
172434 172434 Deletion G
Nucleotide changes within the coding region of CDC15/YAR019C resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 316 is now Alanine rather than Arginine, residue 321 is now Alanine rather than Proline, and 900-902 are now KDV rather than NGC.
New    172416  GAATTCCTTTTTGGGACATCC-TTGTTCCAGTTGTTGTTTAAAAACTCCGTTATTTGTAC  172474
               |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Old    172414  GAATTCCTTTTT-GGACATCCGTTGTTCCAGTTGTTGTTTAAAAACTCCGTTATTTGTAC  172472

New    174165  TCTGCCCAGGCAGCGGGAGCCGCTGCAAGACTGAATTTAGAGGGTGATATATTTAGTTTC  174224
               |||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||
Old    174163  TCTGCCCAGGGAGCGGGAGCCGCTCGAAGACTGAATTTAGAGGGTGATATATTTAGTTTC  174222

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAL047C 55746 55746 Substitution A G
55954 55954 Substitution A T
Nucleotide changes within the coding region of SPC72/YAL047C resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 302 is now Asparagine rather than Isoleucine.
New    55726   TTTCCAAATTGTTTATCAAGACAGATTGCGATTCGATCTTTTCCTTCAGTTGGGAAATCA  55785
               ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Old    55727   TTTCCAAATTGTTTATCAAAACAGATTGCGATTCGATCTTTTCCTTCAGTTGGGAAATCA  55786

New    55916   AATGGAATTTATAAATTGATCATATTCTTTGTGCAAATTTTCTATGACAATCTCTAATTG  55975
               ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Old    55917   AATGGAATTTATAAATTGATCATATTCTTTGTGCAAAATTTCTATGACAATCTCTAATTG  55976

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAL060W 36120 36120 Substitution C A
A single nucleotide substitution within the coding region of BDH1/YAL060W resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 322 is now Aspartic Acid rather than Alanine.
New    36106   TATGTTGTCGAAGACTTCGAAGAAGTTGTTCGTGCCATCCACAACGGAGACATCGCCATG  36165
               ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Old    36107   TATGTTGTCGAAGCCTTCGAAGAAGTTGTTCGTGCCATCCACAACGGAGACATCGCCATG  36166

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAL010C 134852 134854 Substitution TTG ATT
A single nucleotide substitution within the coding region of MDM10/YAL010C resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 272 is now Asparagine rather than Glutamine.
New    134813  TGGCCGAATATGTGGAGGATATATGGCCGAATAATGGATTCCAAGATAATGTCAAAGTTA  134872
               ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Old    134815  TGGCCGAATATGTGGAGGATATATGGCCGAATAATGGTTGCCAAGATAATGTCAAAGTTA  134874

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAL017W 120442 120442 Substitution C G
A single nucleotide substitution within the coding region of PSK1/YAL017W resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 73 is now Glutamic Acid rather than Glutamine.
New    120415  CGAATAAAAAGGAAGGTGATGAGTTCGAGCAAAGTTTAAGAGATACATTTGCGAGCTTTC  120474
               |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Old    120416  CGAATAAAAAGGAAGGTGATGAGTTCCAGCAAAGTTTAAGAGATACATTTGCGAGCTTTC  120475

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAL020C 113702 113703 Substitution CG GC
The substitution of two nucleotides within the coding region of ATS1/YAL020C resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 305 is now Glycine rather than Alanine.
New    113685  GCAGTCCAGGCTGGGAGCCCTTTTGCGGGCCGCAGTTGCCATGCTCTCCCCAGCCCCAGC  113744
               ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Old    113896  GCAGTCCAGGCTGGGACGCCTTTTGCGGGCCGCAGTTGCCATGCTCTCCCCAGCCCCAGC  113745

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAL025C 100399 100399 Substitution A C
A single nucleotide substitution within the coding region of MAK16/YAL025C resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 250 is now Glutamic Acid rather than Glutamine.
New    100375  GCTTTCACTGTCGCTTTCGCTTTCACTGGCGCTGGAAGCTTCTCTGTCAGAGTCAGCTAA  100434
               ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Old    100376  GCTTTCACTGTCGCTTTCGCTTTGACTGGCGCTGGAAGCTTCTCTGTCAGAGTCAGCTAA  100435

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAL056W 40231 40231 Substitution C G
41240 41240 Substitution A G
41664 41664 Substitution T G
41700 41700 Substitution C A
41703 41703 Substitution C A
Nucleotide changes within the coding region of GPB2/YAL056W resulted in an altered protein sequence. The start, stop, and reading frame remain the same, but protein residue 661 is now Valine rather than Isoleucine, residue 802 is now Cysteine rather than Phenylalanine, and residues 814-815 are now ED rather than AA.
New    40196   ATTTTTTTGTAGACGGAATAAAGAACTTACCTCCGCCTTTACTACCTCAAGTGATTAATA  40255
               |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Old    40197   ATTTTTTTGTAGACGGAATAAAGAACTTACCTCCCCCTTTACTACCTCAAGTGATTAATA  40256

New    41216   ACGATAATTTGGAAAATTATATAGTCAATCCAGGGAGAAAATCGTCATCTATTCCAATGA  41275
               ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Old    41217   ACGATAATTTGGAAAATTATATAATCAATCCAGGGAGAAAATCGTCATCTATTCCAATGA  41276

New    41651   TAAGCACGCAGTGTTGGGAAGAACATAAAATTACTCTGTCCAAGAAGGAAGACGATGAGG  41710
               |||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Old    41652   TAAGCACGCAGTTTTGGGAAGAACATAAAATTACTCTGTCCAAGAAGGCAGCCGATGAGG  41711

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAL059C-A, YAL059W 36814 36814 Substitution A C
A single nucleotide substitution within the coding regions of overlapping ORFs ECM1/YAL059W and YAL059C-A resulted in altered protein sequences for both ORFs. The start, stop, and reading frames remain the same for both proteins, but ECM1/YAL059W protein residue 102 is now Alanine rather than Aspartic Acid, and YAL059C-A protein residue 36 is now Alanine rather than Serine.
New    36776   AAGAAGTTAAATAAAAAGGCTCTGGAAGACAAACTGGCCAACTCTATTTCATCCATGGAC  36835
               ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Old    36777   AAGAAGTTAAATAAAAAGGCTCTGGAAGACAAACTGGACAACTCTATTTCATCCATGGAC  36836

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 HRA1 99841 99841 Substitution A T
A single nucleotide substitution was made within ncRNA HRA1.
New    99825   TTCAACTTAGTGGCATTAAACAGATTTGGGTTTTCTGGCAAAAAAAGCCAATCACGTGAT  99884
               ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Old    99826   TTCAACTTAGTGGCAATAAACAGATTTGGGTTTTCTGGCAAAAAAAGCCAATCACGTGAT  99885

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 ARS110, YAR019W-A 175378 175378 Substitution T C
175371 175371 Deletion T
A single nucleotide deletion and a single nucleotide substitution were made in the intergenic region between ORF YAR019W-A and ARS110.
New    175355  GCCCAATTTTGATTATGCC-TCTTTTCCATACACGACGCCAGAGGACATTATTACATTAC  175413
               ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Old    175352  GCCCAATTTTGATTATGCCTTCTTTTTCATACACGACGCCAGAGGACATTATTACATTAC  175411

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 ARS106, YAL038W 70874 70874 Substitution A G
70794 70794 Substitution C G
Two separate single nucleotide substitutions were made in the intergenic region between ARS106 and ORF CDC19/YAL038W.
New    70746   GGTTTTCCGACTTTATTTGAGATGACTTGAGATGTGTGTCAATGCTAGTATTTTGGAGAT  70805
               ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Old    70747   GGTTTTCCGACTTTATTTGAGATGACTTGAGATGTGTGTCAATGCTACTATTTTGGAGAT  70806
New    70856   TTATTTTTTTTTTGTTAGAATTGATCCAAATGTAAATAAACAATCACAAGGAAAAAAAAA  70915
               ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Old    70857   TTATTTTTTTTTTGTTAAAATTGATCCAAATGTAAATAAACAATCACAAGGAAAAAAAAA  70916

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 ARS104, YAL063C 28953 28953 Insertion T
28069 28069 Deletion T
A single nucleotide deletion and a single nucleotide insertion were made in the intergenic region between ORF FLO9/YAL063C and ARS104.
New    28027   GTAAATAAGAAGGAAGAACGTTATGTTATTAATGGACTTTT-AGTGTCATCGAATTTTAT  28085
               ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Old    28028   GTAAATAAGAAGGAAGAACGTTATGTTATTAATGGACTTTTTAGTGTCATCGAATTTTAT  28087
New    28916   AGTAAACAAGAGATACCTAATTTCACAGCCACTTTTTGTTGCGGACACTGACGGGATGTG  28975
               |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Old    28918   AGTAAACAAGAGATACCTAATTTCACAGCCACTTTT-GTTGCGGACACTGACGGGATGTG  28976

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAR023C, tL(CAA)A 180961 180961 Insertion CAAA
A tetranucleotide insertion was made in the intergenic region between ORF YAR023C and tRNA-Leu SUP56/tL(CAA)A.
New    180942  TTCCCATTACAATGCCGAATAGCAAAATATGTAGTAGAACACGTACACGCATGATAATTA  181001
               ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||
Old    180940  TTCCCATTACAATGCCGAATAG----ATATGTAGTAGAACACGTACACGCATGATAATTA  180995

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAL041W, YAL042W 62767 62767 Substitution A G
A single nucleotide substitution was made in the intergenic region between ORFs ERV46/YAL042W and CDC24/YAL041W.
New    62756   TAGGATAGCAGAAGAGTACCATTGCTGTTATCATTTGTTGCCTAGCCCTATCAAGACCTG  62815
               |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Old    62757   TAGGATAGCAAAAGAGTACCATTGCTGTTATCATTTGTTGCCTAGCCCTATCAAGACCTG  62816

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAR047C, YAR050W 203327 203327 Insertion T
202933 202933 Insertion A
Two separate single nucleotide insertions were made in the intergenic region between ORFs YAR047C and FLO1/YAR050W.
New    202902  GCTCATTAATTGCCCTCACAAGAATTTGGAAGTGCGTAGAACAGGTAAAAGATTGTACTA  202961
               ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Old    202895  GCTCATTAATTGCCCTCACAAGAATTTGGAAGTGCGTAG-ACAGGTAAAAGATTGTACTA  202953
New    203322  TTCACTCTTGCTCGTTTGATGTAAGCTCTCTTCCGGGTTCTTATTTTTAATTCTTGTCAC  203381
               |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Old    203314  TTCACTCTTGCTCG-TTGATGTAAGCTCTCTTCCGGGTTCTTATTTTTAATTCTTGTCAC  203372

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAR042W, YAR047C 198900 198900 Insertion A
A single nucleotide insertion was made in the intergenic region between ORFs SWH1/YAR042W and YAR047C.
New    198882  TAAGCCCCTTTTATGGATGCATGAGAAAAAAAAAAAGGTTTGCTACAACCATCTCAGGTC  198941
               ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Old    198876  TAAGCCCCTTTTATGGATGCATGAG-AAAAAAAAAAGGTTTGCTACAACCATCTCAGGTC  198934

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAR020C, YAR023C 178647 178647 Substitution T C
178638 178638 Deletion G
178618 178618 Insertion A
178601 178601 Deletion A
178256 178256 Substitution G C
177135 177135 Insertion T
Several nucleotide sequence changes were made in the intergenic region between ORFs PAU7/YAR020C and YAR023C.
New    177104  CAAAGCTGATCAAGCCGCTGTATTTATATGAAACTTTGAACAACTACATCTGCACACATG  177163
               |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Old    177102  CAAAGCTGATCAAGCCGCTGTATTTATATGAAAC-TTGAACAACTACATCTGCACACATG  177160
New    178244  ACAATTTAACCATGGCAGGTTAAAATATTACTGCGATCAGTAAAAATGGGGATATCACCT  178303
               ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Old    178241  ACAATTTAACCATGGGAGGTTAAAATATTACTGCGATCAGTAAAAATGGGGATATCACCT  178300
New    178599  ATTGT-AGATTGTATCGTTCGAGAAACGTCAGGCATGATAGAT-GTTGCAATCACAGGAC  178656
               ||||| ||||||||||||||||| ||||||||||||||||||| |||||||| |||||||
Old    178596  ATTGTAAGATTGTATCGTTCGAG-AACGTCAGGCATGATAGATGGTTGCAATTACAGGAC  178654

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAR018C, YAR019C 172170 172170 Insertion T
172042 172042 Insertion T
172041 172041 Insertion T
172020 172020 Deletion A
172018 172018 Deletion A
171983 171983 Deletion G
171975 171977 Deletion CTA
171972 171972 Substitution C T
171968 171968 Deletion C
171882 171882 Insertion C
Several nucleotide sequence changes were made in the intergenic region between ORFs KIN3/YAR018C and CDC15/YAR019C.
New    171843  GTAATGAAAAAATTCAGAAACCTTAAAAAAAAAACTTGGCTGTAACCTATCGGAAGACTG  171902
               ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Old    171838  GTAATGAAAAAATTCAGAAACCTTAAAAAAAAAACTTGGCTGTAA-CTATCGGAAGACTG  171896
New    171953  CTAGAAACATTTAACAAAATG-CACTTT---GAGTC-GTTCATACATTTAATCCCCAATT  172007
               ||||||||||||||||||||| ||| ||   ||||| |||||||||||||||||||||||
Old    171947  CTAGAAACATTTAACAAAATGCCACCTTCTAGAGTCGGTTCATACATTTAATCCCCAATT  172006
New    172008  GAAAAAAAAAA-G-AAAAGAAAAAAAGCATATATATGTATATGCTTTTTTATCATTACTG  172065
               ||||||||||| | ||||||||||||||||||||| | ||||||||||||||||||||||
Old    172007  GAAAAAAAAAAAGAAAAAGAAAAAAAGCATATATA-G-ATATGCTTTTTTATCATTACTG  172064
New    172126  GGAAGGTTCACAATTCTATATATAGTGTTAATGTAATGCTGTATTATTTCTCTATATATG  172185
               |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Old    172125  GGAAGGTTCACAATTCTATATATAGTGTTAATGTAATGCTGTATTA-TTCTCTATATATG  172183

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAR007C, YAR008W 158934 158934 Insertion G
A single nucleotide insertion was made in the intergenic region between ORFs RFA1/YAR007C and SEN34/YAR008W.
New    158923  TAACATATATGCAAAAAGAACGGCAAAAGGCGAGGAGGTTTTTATGCCACCGCTAGTATT  158982
               |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Old    158925  TAACATATAT-CAAAAAGAACGGCAAAAGGCGAGGAGGTTTTTATGCCACCGCTAGTATT  158983

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 CEN1, YAR002W 152189 152190 Substitution CA AC
A dinucleotide substitution was made in the intergenic region between CEN1 and ORF NUP60/YAR002W
New    152153  ATATATTTACAAGTGAAAGCTTATTGTAATGTGTACTTTTAAACATCAAATAACAGACCT  152212
               ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Old    152155  ATATATTTACAAGTGAAAGCTTATTGTAATGTGTCATTTTAAACATCAAATAACAGACCT  152214

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAL067C, YAL067W-A 6454 6454 Deletion C
5927 5927 Insertion G
5244 5244 Substitution G A
3981 3982 Substitution AT TA
3836 3836 Deletion C
Several nucleotide sequence changes were made in the intergenic region between ORFs YAL067W-A and SEO1/YAL067C.
New    3791    CTTGGTAGTAACCATAATATTACCCAGGTACGAAACGCTAAGAAC-TTGAAAGACTCATA  3849
               ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Old    3791    CTTGGTAGTAACCATAATATTACCCAGGTACGAAACGCTAAGAACCTTGAAAGACTCATA  3850
New    3960    TTTCCATTTTGATAATGAGCTAGTGATCCGGAAAGCTACTTTATGATGTTTCAAGGCCTG  4019
               ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Old    3961    TTTCCATTTTGATAATGAGCATGTGATCCGGAAAGCTACTTTATGATGTTTCAAGGCCTG  4020
New    5220    TAAATAGTTTTCAACTGCTGGTGATAAATCAATAATTTATGTTCTTAACCTAACATTTGA  5279
               ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Old    5221    TAAATAGTTTTCAACTGCTGGTGGTAAATCAATAATTTATGTTCTTAACCTAACATTTGA  5280
New    5880    AACTGCATTCGGACTATGAAAGAAAAAATGGTAGTAGCAAAGGATAGGCATCGCCGTATT  5939
               ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Old    5881    AACTGCATTCGGACTATGAAAGAAAAAATGGTAGTAGCAAAGGATAG-CATCGCCGTATT  5939
New    6420    AAGTTTCTTAAATAACCCGGATTGGTTAGGTTCA-GCCATGCCTGGCGCGTACATTGAGG  6478
               |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Old    6420    AAGTTTCTTAAATAACCCGGATTGGTTAGGTTCACGCCATGCCTGGCGCGTACATTGAGG  6479

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAL064C-A, YAL064W 16500 16500 Deletion G
16470 16470 Deletion T
16457 16457 Substitution G A
A single nucleotide substitution and two separate single nucleotide deletions were made in the intergenic region between ORFs YAL064C-A and YAL064W.
New    16449   TCTGTGGAAAATAAGAAATT-CAGCACCAGTAAAAGACGAGAAATATAGG-CACATAAAT  16506
               ||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||
Old    16450   TCTGTGGGAAATAAGAAATTTCAGCACCAGTAAAAGACGAGAAATATAGGGCACATAAAT  16509

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAL063C, YAL063C-A 23253 23253 Insertion T
A single nucleotide insertion was made in the intergenic region between ORFs YAL063C-A and FLO9/YAL063C.
New    23217   TTTGCTCATCATTGGATAATTTCTTTTTTTTTTTTTGATGCATCCAAACTTGGACCCCTT  23276
               ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Old    23219   TTTGCTCATCATTGGATAATTTCTTTTTTTTTTTT-GATGCATCCAAACTTGGACCCCTT  23277

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAL021C, YAL022C 110470 110471 Substitution CG GC
A dinucleotide substitution was made in the intergenic region between ORFs FUN26/YAL022C and CCR4/YAL021C.
New    110455  GCGTTTGATGATAAGCTGTCGCCGTAACGTAAATCATTCATCCTTTCCTATGATTTTTTA  110514
               ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Old    110456  GCGTTTGATGATAACGTGTCGCCGTAACGTAAATCATTCATCCTTTCCTATGATTTTTTA  110515

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 YAL010C, YAL011W 134125 134125 Insertion C
A single nucleotide substitution was made in the intergenic region between ORFs SWC3/YAL011W and MDM10/YAL010C.
New    134093  ATTCTGCTTTAACGCCATTATGATTATACACATTGTATTACTTATTTTTTAACCTGTATA  134152
               |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Old    134096  ATTCTGCTTTAACGCCATTATGATTATACA-ATTGTATTACTTATTTTTTAACCTGTATA  134154

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2011-02-03 TEL01R TEL01R-XC 229568 229568 Insertion G
A single nucleotide insertion was made within the right telomere of Chromosome 1, TEL01R specifically within the X element Core sequence TEL01R-XC.
New    229542  ATTACGCATGGAGTTAAGAGTATTTACATGATAATTGGGGTTCCGTGATTCATTATAGAT  229601
               |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Old    229533  ATTACGCATGGAGTTAAGAGTATTTACATGATAATT-GGGTTCCGTGATTCATTATAGAT  229591

Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
SGD paper | PubMed | Full-Text

2008-03-05 YAL044C 58424 58424 Substitution C T
58247 58247 Substitution A C
58196 58196 Substitution A C
Three single base substitutions were made within ORF YAL044C/GCV3 to correct errors in the systematic reference sequence for Chromosome I: Two separate A -> C transversions at 58196 and 58247, and a C -> T transition at 58424. These errors were verified by sequencing in 3 different strains, all of ResGen BY4741 (S288C) background. SGD thanks Michael E. Rice for bringing these errors to our attention, and for verifying the correct sequence.
New:   58191 TTGGGCAATCTCAGTGCCCACTTCTGGCAACTCAACATAGGTAGCGTCCCCTAAGGCATC 58250
             ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Old:   58191 TTGGGAAATCTCAGTGCCCACTTCTGGCAACTCAACATAGGTAGCGTCCCCTAAGGAATC 58250

New:   58251 AGTGGCGTATTTTGTAATTCCGACAAAGGCAGTCTTGTCCTGATGCACAGCTATCCACTC 58310
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Old:   58251 AGTGGCGTATTTTGTAATTCCGACAAAGGCAGTCTTGTCCTGATGCACAGCTATCCACTC 58310

New:   58311 ATGTTGGGAAGTGTACCTCACGGCTTGAGGTCCTTGGGATGAGTACAAAAATGGTAGTTT 58370
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Old:   58311 ATGTTGGGAAGTGTACCTCACGGCTTGAGGTCCTTGGGATGAGTACAAAAATGGTAGTTT 58370

New:   58371 ATTCTTGTTTAGGGCATTGCCGGAGCTGTTTCTCAAAAACAATTTGCTCACAGTGGGCAT 58430
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Old:   58371 ATTCTTGTTTAGGGCATTGCCGGAGCTGTTTCTCAAAAACAATTTGCTCACAGCGGGCAT 58430
2007-04-05 YAL004W, YAL005C 140169 140169 Substitution A G
140182 140182 Substitution A G
140811 140811 Substitution A G
Three single nucleotide substitutions were made within the coding sequence of SSA1 (at nucleotide positions 623, 1252, and 1265 relative to the SSA1 coding sequence), based on the sequence reported by Slater and Craig (1989) and corresponding to GenBank entry X12926. These changes result in phenylalanine to serine changes at amino acid residues 208 and 422 and a change from serine to proline at amino acid residue 418. Thanks to Andreas Bracher for bringing these corrections to our attention.

Note that the change at position 623 of SSA1 also affects the coding sequence of the Dubious ORF YAL004W.

638     ATACCGTCTTCAATGGACAACAAAGAGAC 610     new sequence, coordinates relative to SSA1 coding region
        ||||||||||||||| |||||||||||||       
140796  ATACCGTCTTCAATGAACAACAAAGAGAC 140824  old sequence, chromosomal coordinates

1279   TGGAAAAGATCTCGGACTTCTTTGTTGGAATGGTAGAGTTT 1239    new sequence, coordinates relative to SSA1 coding region
       |||||||||||||| |||||||||||| |||||||||||||
140155 TGGAAAAGATCTCGAACTTCTTTGTTGAAATGGTAGAGTTT 140195  old sequence, chromosomal coordinates

Slater MR and Craig EA (1989) The SSA1 and SSA2 genes of the yeast Saccharomyces cerevisiae. Nucleic Acids Res 17(2):805-6

2006-01-19 YAR042W 193355 193355 Substitution G A
When confirming the G nucleotide insertion that resulted in the merger of SWH1/YAR042W and OSH1/YAR044W (see 2003-09-27), SGD detected an additional sequencing error. The substitution of an A nt for a G nt changes amino acid 248 from a serine to an asparagine.

Substitute an A nt for the G nt at 193355

New: 193341 CGACACCGCCACCAACACCAAGATCGCCATC 193371
            |||||||||||||| ||||||||||||||||
Old: 193341 CGACACCGCCACCAGCACCAAGATCGCCATC 193371
2004-07-20 YAL051W 51694 51694 Deletion G
51688 51688 Deletion G
The work of Kellis et al. 2003 predicted the deletion of 2 separate G nucleotides in YAL051W at chromosomal coordinates 51688 and 51694, and these sequence errors were confirmed in S288C by SGD. As a consequence of these changes, YAL051W was shortened at the 3' end, altering the C-terminus and decreasing the size of the predicted protein from 1062 to 1047 amino acids.
New: 51666 TTTATTTGATTATGACTTTTTG-TTTGG-CAATGACTTTGCTTAAAAATTTTCTTTCCAA 51723
           |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Old: 51666 TTTATTTGATTATGACTTTTTGGTTTGGGCAATGACTTTGCTTAAAAATTTTCTTTCCAA 51725

Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54.
SGD paper | PubMed | Full-Text | Comments Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54 Errata

2004-01-30 YAR014C 166772 166772 Deletion G
Kellis et al. 2003 predicted and confirmed the deletion of a single G nucleotide at chromosomal coordinate 166772. As a consequence of this sequence change, YAR014C was extended at the 3' end, altering the C-terminus and increasing the size of the predicted protein from 702 to 707 amino acids.
New: 166731 TTGTAAGGACAATATCATTTACGAATAATTTCATCCAATTG-TTTCATCAACACA 166784
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Old: 166731 TTGTAAGGACAATATCATTTACGAATAATTTCATCCAATTGGTTTCATCAACACA 166785

Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54.
SGD paper | PubMed | Full-Text | Comments Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54 Errata

2004-01-24 YAL056W 41778 41778 Insertion G
Kellis et al. 2003 predicted and confirmed the insertion of a single G nucleotide after the T at chromosomal coordinate 41778. As a consequence of this sequence change, YAL056W was extended at the 3' end, altering the C-terminus and increasing the size of the predicted protein increasing from 847 to 880 amino acids.
New: 41724 GCGAAAATGAAGATACAAATTCAAATATAGTAGTTGGTGTCGGTGGCACTTCTTTGCAAT 41783
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Old: 41724 GCGAAAATGAAGATACAAATTCAAATATAGTAGTTGGTGTCGGTGGCACTTCTTT-CAAT 41782

Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54.
SGD paper | PubMed | Full-Text | Comments Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54 Errata

2004-01-22 YAL002W 143848 143848 Insertion C
Kellis et al. 2003 and Cliften et al. 2003 predicted and confirmed the insertion of a single C nucleotide after the C at chromosomal coordinate 143848. As a consequence of this sequence change, YAL002W was extended at the 5' end, altering the N-terminus and increasing the size of the predicted protein from 1176 to 1274 amino acids.
New: 143826 ATCTAGTTCTTCATATACGGCACCTCCCCTGAACGAAGATGGTCCTAAAGGGGTAGCTTC 143885
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Old: 143826 ATCTAGTTCTTCATATACGGCAC-TCCCCTGAACGAAGATGGTCCTAAAGGGGTAGCTTC 143884

Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54.
SGD paper | PubMed | Full-Text | Comments Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54 Errata
Cliften P, et al. (2003) Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301(5629):71-6.
SGD paper | PubMed | Full-Text | Web Supplement

2003-12-17 YAL013W 130239 130239 Insertion C
130246 130247 Substitution CG GC
Kellis et al. 2003 and Brachat et al. 2003 predicted and confirmed the insertion of a single C nucleotide after the C at position 130239 on Chromosome I. As a consequence of this sequence change, YAL013W was extended at the 3' end, altering the C-terminus and increasing the size of the predicted protein from 362 to 420 amino acids. They also found an additional seqeuncing error: the CG at 130246-130247 should be GC.
Old: 130201 ACTTGATAACAAGACGCTGAGCTGTATCACGGGCTACGC-AGCGCACGACAGCTGTGCTA 130259
            ||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||
New: 130201 ACTTGATAACAAGACGCTGAGCTGTATCACGGGCTACGCCAGCGCAGCACAGCTGTGCTA 130260

Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54.
SGD paper | PubMed | Full-Text | Comments Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54 Errata
Brachat S, et al. (2003) Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii. Genome Biol 4(7):R45.
SGD paper | PubMed | Full-Text

2003-09-27 YAR042W, YAR044W 193300 193300 Insertion G
Insertion of a single G after the G at 193300 merged SWH1/YAR042W and OSH1/YAR044W. After merging YAR042W (coordinates 192613-193383 (1-771)) and YAR044W (coordinates 193599-196178 (1-2580)), the coordinates of the merged ORF, SWH1/YAR042W, are 192613-196179 (1-3567). OSH1 and YAR044W are now aliases of SWH1/YAR042W. This sequence change was predicted by several studies, then verified in S288c by SGD.
Old: 193261 CTTGAACACGGTGCTGACCCCTTCAAGAGAGACCGCAAGG-CAAACTGCCCATCGAGCTC 193319
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
New: 193261 CTTGAACACGGTGCTGACCCCTTCAAGAGAGACCGCAAGGGCAAACTGCCCATCGAGCTC 193320

Schmalix WA and Bandlow W (1994) SWH1 from yeast encodes a candidate nuclear factor containing ankyrin repeats and showing homology to mammalian oxysterol-binding protein. Biochim Biophys Acta 1219(1):205-10 Beh CT, et al. (2001) Overlapping functions of the yeast oxysterol-binding protein homologues. Genetics 157(3):1117-40
SGD paper | PubMed | Full-Text
Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54.
SGD paper | PubMed | Full-Text | Comments Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54 Errata
Brachat S, et al. (2003) Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii. Genome Biol 4(7):R45.
SGD paper | PubMed | Full-Text
Cliften P, et al. (2003) Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301(5629):71-6.
SGD paper | PubMed | Full-Text | Web Supplement

2002-12-17 YAL023C 108137 108137 Insertion CC
108143 108143 Insertion G
Due to the insertion of CC after the C at 108137, and the insertion of a G after the G at 108143 in the systematic sequence of Chromosome I, the coordinates of PMT2/YAL023C have been changed. Thanks to Verena Girrbach (verena.girrbach@biologie.uni-regensburg.de) for reporting this sequence error in the systematic sequence of PMT2/FUN25/YAL023C to SGD.
Old: 108121 AGTCTGGGTAAATTTCC--AGAAGG-AAGTCCCAAGAACCGTTGTAGCCTGCCAAATAAC 108177
            |||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||
New: 108121 AGTCTGGGTAAATTTCCCCAGAAGGGAAGTCCCAAGAACCGTTGTAGCCTGCCAAATAAC 108180
2002-12-17 YAL014C 128441 128441 Insertion T
Due to the insertion of a single T nucleotide after the T at coordinate 128441 in the systematic sequence of Chromosome I, the ORF SUN8/YAL014C was extended 450 nucleotides in the 3' direction, making the protein product 150 amino acids longer at the C-terminus. Thanks to Lena Burri, Trevor Lithgow, and Hugh Pelham for reporting this sequence error in the systematic sequence of SYN8/UIP2/YAL014C to SGD.
Old: 128398 TTCTAAATCAACCAGCAGCGAGTCGTTCTGAGAAACGATCTCAT-ATTAAGGTCCAGCGA 128456
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
New: 128401 TTCTAAATCAACCAGCAGCGAGTCGTTCTGAGAAACGATCTCATTATTAAGGTCCAGCGA 128460

Lewis MJ and Pelham HR (2002) A new yeast endosomal SNARE related to mammalian syntaxin 8. Traffic 3(12):922-9

1998-09-02 YAL062W, YAL063C 29254 29254 Deletion A
29289 29289 Deletion A
29290 29290 Deletion A
29291 29291 Deletion T
29307 29307 Deletion A
29301 29301 Substitution T A
The following changes were made to the systematic sequence of Chromosome I in the region encompassing features FLO9/YAL063C and GDH3/YAL062W: deletion of the A at 29254, deletion of AAT at 29289-29291, transversion of T to A at 29301, and deletion of the A at 29307.
Old: 29221 TGAAATCATACCTGCCAAGCTTGCTGCACTTGGAAAGGCAACTCCGTTTTTCAGAGATTA 29280
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
New: 29221 TGAAATCATACCTGCCAAGCTTGCTGCACTTGGAA-GGCAACTCCGTTTTTCAGAGATTA 29279
Old: 29281 GATCCTTTAATTTTTTTTGATGAAAAAGGCAGCCAAGTTACGTCATAGAGAAAACTCCCT 29340
           ||||||||   ||||||||| ||||| |||||||||||||||||||||||||||||||||
New: 29280 GATCCTTT---TTTTTTTGAAGAAAA-GGCAGCCAAGTTACGTCATAGAGAAAACTCCCT 29335
1998-09-02 YAR060C, YARCdelta8 210810 210810 Substitution T A
211011 211011 Substitution C T
210804 210804 Deletion T
The following changes were made to the systematic sequence of Chromosome I in the region encompassing features YARCdelta8 and YAR060C: deletion of the T at 210804, transversion of T to A at 210810, and transition of C to T at 211011.
Old: 210781 TTTCTCTTTGCTTGCATCTTTTTTCTTCCTTGCCAAAAAATAAAAGATACTCATTTTAAA 210840
            ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
New: 210776 TTTCTCTTTGCTTGCATCTTTTT-CTTCCATGCCAAAAAATAAAAGATACTCATTTTAAA 210834
Old: 210961 GCCCTTCTACGGCTTCTTCTAACCAATTGTTCCCCGTGAGTTGCTTTCTCCGAAAACCTT 211020
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
New: 210955 GCCCTTCTACGGCTTCTTCTAACCAATTGTTCCCCGTGAGTTGCTTTCTCTGAAAACCTT 211014
1998-09-02 YAR050W 203939 203939 Substitution T G
The following sequence change was made to the systematic sequence of Chromosome I within the ORF YAR050W/FLO1: transversion of T to G at 203939.
Old: 203881 CAATTCTATCAGTAGGTGGTGCAACCGCGTTCAACTGTTGTGCTCAACAGCAACCGCCTA 203940
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
New: 203876 CAATTCTATCAGTAGGTGGTGCAACCGCGTTCAACTGTTGTGCTCAACAGCAACCGCCGA 203935

Annotation Changes

Date Affected Features
2014-11-18 ARS104, ARS106, ARS107, ARS110, ARS111

As part of SGD's genome annotation revision R64.2, new ARS consensus sequences were annotated within the following ARS elements on Chromosome I based on Liachko et al. 2013: ARS104, ARS106, ARS107, ARS110, ARS111.

Liachko I, et al. (2013) High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast. Genome Res 23(4):698-704.
SGD paper | PubMed | Full-Text

2014-11-18 ARS102, ARS105, ARS106, ARS108

The chromosomal coordinates of the following ARS elements on Chromosome I were updated based on Liachko et al. 2013 as part of SGD's genome annotation revision R64.2: ARS102, ARS105, ARS106, ARS108.

Liachko I, et al. (2013) High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast. Genome Res 23(4):698-704.
SGD paper | PubMed | Full-Text

2014-11-18 YAR061W, YAR062W

As part of SGD's genome annotation revision R64.2, the two pseudogenes YAR061W + YAR062W have been combined into a single pseudogene, keeping the name YAR061W. This region is homologous to parts of FLO1/YAR050W and FLO9/YAL063C, but contains stop codons at several positions.

Teunissen AW and Steensma HY (1995) Review: the dominant flocculation genes of Saccharomyces cerevisiae constitute a new subtelomeric gene family. Yeast 11(11):1001-13

2007-05-08 snR18

Updated coordinates of snR18 based on GenBank U12981.

Hiraga SI, et al. (2012) TFIIIC localizes budding yeast ETC sites to the nuclear periphery. Mol Biol Cell 23(14):2741-54
SGD paper | PubMed | Full-Text

2007-05-08 HRA1

Updated coordinates of HRA1 based on Yang & Altman 2007.

Yang L and Altman S (2007) A noncoding RNA in Saccharomyces cerevisiae is an RNase P substrate. RNA 13(5):682-90
SGD paper | PubMed | Full-Text

2007-03-07 ARS102, ARS103, ARS105, ARS108, ARS111, ARS112

The following ARS elements were added to the genome annotation on Chromosome I based on Xu et al. 2006: ARS102, ARS103, ARS105, ARS108, ARS111, ARS112.

Xu W, et al. (2006) Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae. BMC Genomics 7():276
SGD paper | PubMed | Full-Text

2007-03-07 ARS109

The ACS within ARS101/ARS109 at coordinates 159946-159936 was added based on Xu et al. 2006 and Theis & Newlon 2001.

Theis JF and Newlon CS (2001) Two compound replication origins in Saccharomyces cerevisiae contain redundant origin recognition complex binding sites. Mol Cell Biol 21(8):2790-801
SGD paper | PubMed | Full-Text
Xu W, et al. (2006) Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae. BMC Genomics 7():276
SGD paper | PubMed | Full-Text

2007-02-06 HRA1

This RNA gene, HRA1, was described by Samanta et al. (2006). Approximate start and stop coordinates, which are accurate to within 25 nucleotides, have been specified for this non-coding RNA. Many thanks to Manoj Samanta for alerting us to this noncoding RNA.

Samanta MP, et al. (2006) Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway. Proc Natl Acad Sci U S A 103(11):4192-7
SGD paper | PubMed | Full-Text

2006-10-02 ARS109

An ARS Consensus Sequence (ACS) was added to ARS109 based on Nieduszynski et al. 2006.

Nieduszynski CA, et al. (2006) Genome-wide identification of replication origins in yeast by comparative genomics. Genes Dev 20(14):1874-9
SGD papers | PubMed Entry | Full-Text | Web Supplement

2006-09-06 ARS104, ARS106, ARS107

The following ARS elements on Chromosome I were added to SGD based on Nieduszynski et al. 2006: ARS104, ARS106, ARS107.

Nieduszynski CA, et al. (2006) Genome-wide identification of replication origins in yeast by comparative genomics. Genes Dev 20(14):1874-9
SGD papers | PubMed Entry | Full-Text | Web Supplement

2006-09-06 ARS109, ARS110

Updated coordinates of the following ARS elements on Chromosome I based on Nieduszynski et al. 2006: ARS101/109, ARS110.

Nieduszynski CA, et al. (2006) Genome-wide identification of replication origins in yeast by comparative genomics. Genes Dev 20(14):1874-9
SGD papers | PubMed Entry | Full-Text | Web Supplement

2006-05-08 CEN1

The previously annotated boundaries of CEN1 were adjusted to coincide with the 5' end of CDEI and the 3' end of CDEIII, to more accurately reflect current knowledge regarding centromere structure in Saccharomyces cerevisiae.

Wieland G, et al. (2001) Determination of the binding constants of the centromere protein Cbf1 to all 16 centromere DNAs of Saccharomyces cerevisiae. Nucleic Acids Res 29(5):1054-60
SGD paper | PubMed | Full-Text
Espelin CW, et al. (2003) Binding of the essential Saccharomyces cerevisiae kinetochore protein Ndc10p to CDEII. Mol Biol Cell 14(11):4557-68
SGD paper | PubMed | Full-Text

2006-02-28 ARS110

This ARS element ARS110 was added to the genome annotation based on Wyrick et al. 2001 and Dimock et al. 1984.

Dimock K, et al. (1984) Molecular cloning of the ADE1 gene of Saccharomyces cerevisiae and stability of the transformants. Gene 27(2):233-7
SGD paper | PubMed | Full-Text
Wyrick JJ, et al. (2001) Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins. Science 294(5550):2357-60
SGD paper | PubMed | Full-Text | YFGdb | Comments & Errata

2004-10-18 ARS109

ARS101 was added to SGD based on Theis and Newlon 2001 and Wyrick et al. 2001.

Theis JF and Newlon CS (2001) Two compound replication origins in Saccharomyces cerevisiae contain redundant origin recognition complex binding sites. Mol Cell Biol 21(8):2790-801 Wyrick JJ, et al. (2001) Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins. Science 294(5550):2357-60
SGD paper | PubMed | Full-Text | YFGdb | Comments & Errata

2004-10-12 CEN1

Centromeric DNA elements CDEI, CDEII, and CDEIII were annotated based on Wieland et al. 2001 and Espelin et al. 2003.

Wieland G, et al. (2001) Determination of the binding constants of the centromere protein Cbf1 to all 16 centromere DNAs of Saccharomyces cerevisiae. Nucleic Acids Res 29(5):1054-60
SGD paper | PubMed | Full-Text
Espelin CW, et al. (2003) Binding of the essential Saccharomyces cerevisiae kinetochore protein Ndc10p to CDEII. Mol Biol Cell 14(11):4557-68
SGD paper | PubMed | Full-Text

2003-09-22 YAL044C

The start site of GCV3/YAL044C was moved 21 nt (7 codons) downstream, based on the automated comparison of closely-related Saccharomyces species by Kellis et al. 2003. The numbering for both the nucleotides in the DNA coding sequence and the amino acids in the predicted protein have been updated. Evidence supporting this change includes: 1) This is the predicted start methionine in the majority of Saccharomyces species orthologs analyzed by Kellis et al. and/or Cliften et al.; 2) Significant sequence conservation begins abruptly at this predicted start methionine.

Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54.
SGD paper | PubMed | Full-Text | Comments Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54 Errata
Cliften P, et al. (2003) Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301(5629):71-6.
SGD paper | PubMed | Full-Text | Web Supplement

2003-09-22 YAL034C

The start site of FUN19/YAL034C was moved 150 nt (50 codons) downstream, based on the automated comparison of closely-related Saccharomyces species by Kellis et al. 2003. The numbering for both the nucleotides in the DNA coding sequence and the amino acids in the predicted protein have been updated. Evidence supporting this change includes: 1) This is the predicted start methionine in the majority of Saccharomyces species orthologs analyzed by Kellis et al. and/or Cliften et al.; 2) Significant sequence conservation begins abruptly at this predicted start methionine.

Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54.
SGD paper | PubMed | Full-Text | Comments Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54 Errata
Cliften P, et al. (2003) Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301(5629):71-6.
SGD paper | PubMed | Full-Text | Web Supplement

2003-09-22 YAL011W

The start site of YAL011W was moved 39 nt (13 codons) downstream, based on the automated comparison of closely-related Saccharomyces species by Kellis et al. 2003. The numbering for both the nucleotides in the DNA coding sequence and the amino acids in the predicted protein have been updated. Evidence supporting this change includes: 1) This is the predicted start methionine in the majority of Saccharomyces species orthologs analyzed by Kellis et al. and/or Cliften et al.; 2) Significant sequence conservation begins abruptly at this predicted start methionine.

Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54.
SGD paper | PubMed | Full-Text | Comments Kellis M, et al. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241-54 Errata
Cliften P, et al. (2003) Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301(5629):71-6.
SGD paper | PubMed | Full-Text | Web Supplement

2003-09-09 TEL01L, TEL01R

The chromosomal locations for the following telomeric features on Chromosome I were generously provided by Ed Louis and Dave Barton (University of Leicester, UK): TEL01L, TEL01L-TR, TEL01L-XC, TEL01L-XR, TEL01R, TEL01R-TR, and TEL01R-XC.

2003-07-29 YAL016C-B

Thanks to Kessler et al. 2003 for providing the coordinates of ORF YAL016C-B on Chromosome I.

Kessler MM, et al. (2003) Systematic discovery of new genes in the Saccharomyces cerevisiae genome. Genome Res 13(2):264-71.
SGD paper | PubMed | Full-Text

2003-07-29 YAL037C-B, YAL067W-A, YAL068W-A, YAR035C-A

Thanks to Kumar et al. 2002 for providing the coordinates of the following ORFs on Chromosome I: YAL037C-B, YAL067W-A, YAL068W-A, YAR035C-A.

Kumar A, et al. (2002) An integrated approach for finding overlooked genes in yeast. Nat Biotechnol 20(1):58-63.
SGD paper | PubMed | Full-Text | YFGdb | Comments & Errata

2003-07-29 YAL016C-A, YAL019W-A, YAL026C-A, YAL031W-A, YAL037C-A, YAL047W-A, YAL059C-A, YAR019W-A

Thanks to MIPS for providing the coordinates of the following ORFs on Chromosome I: YAL016C-A, YAL019W-A, YAL026C-A, YAL031W-A, YAL037C-A, YAL047W-A, YAL059C-A, and YAR019W-A.

2003-07-29 YAL063C-A

Thanks to Oshiro et al., Velculescu et al., and Basrai et al. for providing the coordinates of ORF YAL063C-A on Chromosome I.

Basrai MA, et al. (1999) NORF5/HUG1 is a component of the MEC1-mediated checkpoint response to DNA damage and replication arrest in Saccharomyces cerevisiae. Mol Cell Biol 19(10):7041-9
SGD paper | PubMed | Full-Text
Velculescu VE, et al. (1997) Characterization of the yeast transcriptome. Cell 88(2):243-51.
SGD paper | PubMed | Full-Text | YFGdb
Oshiro G, et al. (2002) Parallel identification of new genes in Saccharomyces cerevisiae. Genome Res 12(8):1210-20.
SGD paper | PubMed | Full-Text | Web Supplement | YFGdb

2001-01-30 YAL044W-A

ORF added based on similarity to an S. pombe gene (information submitted by Valerie Wood).

1999-07-17 YAR043C, YAR052C, YAR074C

Deleted ORF, does not encode a protein; this putative ORF was included in the original annotation of Chromosome I but was later withdrawn