UW-Stout/Formamide SP22

Wild Yeast Cell Pilot Procedure

Caution

Neat Formamide is harmful to the eyes, if swallowed, inhaled, or absorbed through the skin.

Materials / Equipment

• Neat Formamide, 33ul
• Sterile water, 567ul
• 0.2ml flat cap PCR tube, 13
• Well plate
• Wild yeast cells, 600ul
• Molecular Devices SpectraMax Plus 384 Microplate Reader
• Micropipet 100ul
• Micropipet tips

Formamide Concentrations

1. 0.5ul formamide + 49.5ul sterile water
2. 1.0ul formamide + 49.0ul sterile water
3. 1.5ul formamide + 48.5ul sterile water
4. 2.0ul formamide + 48.0ul sterile water
5. 2.5ul formamide + 47.5ul sterile water
6. 3.0ul formamide + 47.0ul sterile water
7. 3.5ul formamide + 46.5ul sterile water
8. 4.0ul formamide + 46.0ul sterile water
9. 4.5ul formamide + 45.5ul sterile water
10. 5.0ul formamide + 45.0ul sterile water
11. 5.5ul formamide + 44.5ul sterile water
12. 0.0ul formamide + 50.0ul sterile water

Procedure

1. Obtain the neat formamide (refrigerated) and sterile water
2. Obtain and label 12 PCR tubes 1-12
3. Obtain one more PCR tube to transfer 33ul of neat formamide inside, can put excess in
4. Use the 13th PCR tube to transfer the amount of formamide to each PCR tube as needed
5. Pipet appropriate amount of formamide and sterile water into the labeled PCR tubes according to number
6. In a sterile environment, pipet the liquid (50ul) from the PCR tube into the well cell as well as 50ul of the wild yeast cells
7. Incubate assess tray at 30 degrees Celsius for 24 hours and record data

Results

• The x-axis corresponds to the concentrations listed up above (ex: B1 corresponds to the 0.5%)
• 0% is an experimental error- since it has a concentration of 0% formamide anyway, it was left in the final graph

• The 3% formamide used in the pilot experiment and represented as B-5 (in the top-most picture) was chosen to be used on the transformed yeast cells
• This was deduced due to the position of B-5
• B-5 was able to grow, but didn't grow too much- simply put, it was in the middle

Knockout Yeast Cell Gene

Materials / Equipment

• Neat formamide, 18ul
• Sterile water, 423ul
• 0.2ml flat cap PCR tube 10
• Well plate
• Knock out yeast cells
• Molecular Devices SpectraMax Plus 384 Microplate Reader
• Micropipet 100ul
• Micropipet tips

Procedure

1. Obtain neat formamide (refrigerated) and sterile water
2. Obtain and label PCR tubes 1-9
3. Pipet approximately 18ul formamide into a 10th PCR tube, can put excess in
4. Using the 10th PCR tube, pipet 3.0ul of formamide into each PCR tube (labeled 1-9)- this minimizes contamination
5. Pipet 47.0ul of sterile water into each of the numbered PCR tubes
6. In a sterile environment, pipet 50ul of liquid from the PCR tubes into well cells. Pipet 50ul of each knockout strain into the appropriate well cells
7. Incubate assess tray at 30 degrees Celsius for 24 hours and record data

Results

• Ran three trials, trial one through three is posted up above in picture form
• The dark line in the middle of the graph is a scanning error from the Molecular Devices SpectraMax Plus 384 Microplate Reader
• Computed doubling times from the average times of the three trials