Details of 2021 Reference Genome Annotation Update R64.3
The S. cerevisiae strain S288C reference genome annotation was updated in its first major update since 2014. The new genome annotation is release R64.3.1, dated 2021-04-22. Note that the underlying genome sequence itself was not altered in any way.
Contents
R64.3 Annotation update summary
This annotation update included (details in table below):
- 7 new ORFs: OTO1/YGR227C-A, YHR052C-B, YHR054C-B, YJR107C-A, YKL104W-A, YLR379W-A, YMR008C-A
- 5 new ncRNAs: GAL10-ncRNA, TBRT/XUT_2F-154, SUT169, PHO84 lncRNA, GAL4 lncRNA
- 2 new uORFs for ROK1/YGL171W
- 1 new recombination enhancer: RE
- 1 new LTR: YELWdelta27
- 3 ORFs with shifted translation starts: HPA3/YEL066W, YJR012C, LTO1/YNL260C
- 1 ORF with shifted translation stop plus new intron: LDO45/YMR147W
- Changed feature_type (and SO_term) for non-transcribed spacers: NTS1-2, NTS2-1, NTS2-2
- New systematic nomenclature system for entire annotated complement of ncRNAs
R64.3 Annotation update details
| Chr | Feature | Description of change | Reference |
|---|---|---|---|
| II | YNCB0008W aka GAL10-ncRNA | New ncRNA antisense to GAL10
|
Houseley et al 2008 PMID:19061643,
Pinskaya et al 2009 PMID:19407817,
|
| II | YNCB0014W aka TBRT/XUT_2F-154 | New ncRNA antisense to TAT1
|
Awasthi et al 2020 PMID:32081726 |
| III | RE/RE301 | New recombination enhancer
|
Wu and Haber 1996 PMID:8861911 |
| V | YELWdelta27 | New Ty1 LTR
|
Nene et al 2018 PMID:29320491 |
| V | HPA3/YEL066W | Moved translation start to Met19
|
Sampath et al 2013 PMID:23775086 |
| VII | OTO1/YGR227C-A | New ORF
|
Makanae et al 2015 PMID:25781884 |
| VII | ROK1/YGL171W | Two new uORFs
|
Jeon and Kim 2010 PMID:20969870 |
| VIII | YHR052C-B | New ORF
|
He et al 2018 PMID:29897761 |
| VIII | YHR054C-B | New ORF
|
He et al 2018 PMID:29897761 |
| VIII | SUT169/YNCH0011W | New ncRNA
|
Xu et al 2009 PMID:19169243,
Geisler et al 2012 PMID:22226051,
|
| X | YJR012C | Moved start to Met76
|
Sadhu et al 2018 PMID:29632376 |
| X | YJR107C-A | New ORF
|
Yagoub et al 2015 PMID:26554900, He et al 2018 PMID:29897761 |
| XI | YKL104W-A | New ORF
|
He et al 2018 PMID:29897761 |
| XII | YLR379W-A | New ORF
|
Internal reanalysis of results from Song et al 2015 to find and annotate missing S288C ORFs PMID:25781462 |
| XII | NTS1-2, NTS2-1, NTS2-2 | Change feature_type/SO_term from SO:0001637 rRNA_gene to SO:0000183 non_transcribed_region | |
| XIII | LDO45/YMR147W | Shift stop to be same as LDO16/YMR148W, add intron
|
Eisenberg-Bord et al 2018 PMID:29187527 |
| XIII | YMR008C-A | New ORF
|
Internal reanalysis of results from Song et al 2015 to find and annotate missing S288C ORFs PMID:25781462 |
| XIII | YNCM0001W aka PHO84 lncRNA | New ncRNA
|
Camblong et al 2007 PMID:18022365 |
| XIV | LTO1/YNL260C | Move start to Met37
|
Paul et al 2015 PMID:26182403 |
| XVI | YNCP0002W aka GAL4 lncRNA | New ncRNA
|
Geisler et al 2012 PMID:22226051 |
New systematic nomenclature system for noncoding RNA genes
| Chr | Systematic_name | Gene_name | Alias | Feature_type | Coordinates | Strand |
|---|---|---|---|---|---|---|
| I | YNCA0001W | HRA1 | ncRNA gene | 99305..99868 | + | |
| I | YNCA0002W | TRN1 | tP(UGG)A | tRNA gene | 139152..139254 | + |
| I | YNCA0003W | SNR18 | snR18 | snoRNA gene | 142367..142468 | + |
| I | YNCA0004W | TGA1 | tA(UGC)A | tRNA gene | 166267..166339 | + |
| I | YNCA0005W | SUP56 | tL(CAA)A | tRNA gene | 181141..181254 | + |
| I | YNCA0006C | tS(AGA)A | tRNA gene | 182522..182603 | - | |
| II | YNCB0001W | tL(UAA)B1 | tRNA gene | 9583..9666 | + | |
| II | YNCB0002W | tF(GAA)B | tRNA gene | 36398..36488 | + | |
| II | YNCB0003W | SNR56 | snR56 | snoRNA gene | 88190..88277 | + |
| II | YNCB0004W | tI(AAU)B | tRNA gene | 197494..197567 | + | |
| II | YNCB0005C | tG(GCC)B | tRNA gene | 197629..197699 | - | |
| II | YNCB0006W | tS(AGA)B | tRNA gene | 227075..227156 | + | |
| II | YNCB0007W | tT(AGU)B | tRNA gene | 266378..266450 | + | |
| II | YNCB0008W | GAL10-ncRNA | ncRNA gene | 276805..280645 | + | |
| II | YNCB0009C | SNR161 | snR161 | snoRNA gene | 307185..307345 | - |
| II | YNCB0010W | TLC1 | telomerase RNA gene | 307587..308887 | + | |
| II | YNCB0011C | tV(UAC)B | tRNA gene | 326792..326865 | - | |
| II | YNCB0012W | tL(UAA)B2 | tRNA gene | 347603..347686 | + | |
| II | YNCB0013W | tQ(UUG)B | tRNA gene | 350827..350898 | + | |
| II | YNCB0014W | TBRT | XUT_2F-154 | ncRNA gene | 376610..378633 | + |
| II | YNCB0015W | tR(UCU)B | tRNA gene | 405878..405949 | + | |
| II | YNCB0016W | tD(GUC)B | tRNA gene | 405960..406031 | + | |
| II | YNCB0017C | tC(GCA)B | tRNA gene | 643007..643078 | - | |
| II | YNCB0018W | tE(UUC)B | tRNA gene | 645167..645238 | + | |
| II | YNCB0019C | LSR1 | snRNA gene | 680688..681862 | - | |
| III | YNCC0001C | tE(UUC)C | tRNA gene | 82462..82533 | - | |
| III | YNCC0002W | SUP53 | tL(CAA)C | tRNA gene | 90859..90972 | + |
| III | YNCC0003C | SNR43 | snR43 | snoRNA gene | 107504..107712 | - |
| III | YNCC0004C | SUF2 | tP(AGG)C | tRNA gene | 123577..123648 | - |
| III | YNCC0005W | tN(GUU)C | tRNA gene | 127716..127789 | + | |
| III | YNCC0006C | SNR33 | snR33 | snoRNA gene | 142364..142546 | - |
| III | YNCC0007C | SUF16 | tG(GCC)C | tRNA gene | 142701..142771 | - |
| III | YNCC0008W | tM(CAU)C | tRNA gene | 149920..149991 | + | |
| III | YNCC0009C | tK(CUU)C | tRNA gene | 151284..151356 | - | |
| III | YNCC0010C | tQ(UUG)C | tRNA gene | 168301..168372 | - | |
| III | YNCC0011W | SNR65 | snR65 | snoRNA gene | 177183..177282 | + |
| III | YNCC0012C | SNR189 | snR189 | snoRNA gene | 178610..178798 | - |
| III | YNCC0013W | SUP61 | tS(CGA)C | tRNA gene | 227942..228042 | + |
| III | YNCC0014W | tT(AGU)C | tRNA gene | 295484..295556 | + | |
| IV | YNCD0001W | tG(GCC)D1 | tRNA gene | 83548..83618 | + | |
| IV | YNCD0002C | SNR63 | snR63 | snoRNA gene | 323217..323471 | - |
| IV | YNCD0003W | tK(UUU)D | tRNA gene | 359577..359672 | + | |
| IV | YNCD0004W | tA(AGC)D | tRNA gene | 410379..410451 | + | |
| IV | YNCD0005C | tT(AGU)D | tRNA gene | 434264..434336 | - | |
| IV | YNCD0006W | tS(AGA)D1 | tRNA gene | 437772..437853 | + | |
| IV | YNCD0007C | tV(UAC)D | tRNA gene | 488797..488870 | - | |
| IV | YNCD0008W | tL(UAA)D | tRNA gene | 519743..519826 | + | |
| IV | YNCD0009W | tQ(UUG)D1 | tRNA gene | 520972..521043 | + | |
| IV | YNCD0010C | SNR47 | snR47 | snoRNA gene | 541602..541700 | - |
| IV | YNCD0011W | tR(UCU)D | tRNA gene | 568882..568953 | + | |
| IV | YNCD0012W | tD(GUC)D | tRNA gene | 568964..569035 | + | |
| IV | YNCD0013C | tR(ACG)D | tRNA gene | 619969..620041 | - | |
| IV | YNCD0014C | tQ(UUG)D2 | tRNA gene | 645153..645224 | - | |
| IV | YNCD0015C | tI(AAU)D | tRNA gene | 668007..668080 | - | |
| IV | YNCD0016C | tQ(UUG)D3 | tRNA gene | 802731..802802 | - | |
| IV | YNCD0017W | tI(UAU)D | tRNA gene | 884361..884493 | + | |
| IV | YNCD0018W | SUP2 | tY(GUA)D | tRNA gene | 946312..946400 | + |
| IV | YNCD0019C | tS(AGA)D2 | tRNA gene | 980974..981055 | - | |
| IV | YNCD0020W | tG(GCC)D2 | tRNA gene | 992832..992902 | + | |
| IV | YNCD0021C | tE(CUC)D | tRNA gene | 1017207..1017278 | - | |
| IV | YNCD0022C | tV(CAC)D | tRNA gene | 1075472..1075544 | - | |
| IV | YNCD0023C | tF(GAA)D | tRNA gene | 1095370..1095461 | - | |
| IV | YNCD0024C | tX(XXX)D | tRNA gene | 1150842..1150941 | - | |
| IV | YNCD0025W | EMT1 | tM(CAU)D | tRNA gene | 1175829..1175901 | + |
| IV | YNCD0026W | tK(CUU)D1 | tRNA gene | 1201750..1201822 | + | |
| IV | YNCD0027C | SUF3 | tG(CCC)D | tRNA gene | 1257008..1257079 | - |
| IV | YNCD0028W | tS(AGA)D3 | tRNA gene | 1305630..1305712 | + | |
| IV | YNCD0029C | tK(CUU)D2 | tRNA gene | 1352466..1352538 | - | |
| IV | YNCD0030W | SNR13 | snR13 | snoRNA gene | 1402919..1403042 | + |
| IV | YNCD0031C | tL(CAA)D | tRNA gene | 1461715..1461829 | - | |
| IV | YNCD0032C | SNR84 | snR84 | snoRNA gene | 1492477..1493026 | - |
| V | YNCE0001C | SNR80 | snR80 | snoRNA gene | 52150..52320 | - |
| V | YNCE0002W | SNR67 | snR67 | snoRNA gene | 61352..61433 | + |
| V | YNCE0003W | SNR53 | snR53 | snoRNA gene | 61699..61789 | + |
| V | YNCE0004C | tG(GCC)E | tRNA gene | 61890..61960 | - | |
| V | YNCE0005W | tS(AGA)E | tRNA gene | 86604..86685 | + | |
| V | YNCE0006W | IMT4 | tM(CAU)E | tRNA gene | 100133..100204 | + |
| V | YNCE0007C | RPR1 | ncRNA gene | 117667..118035 | - | |
| V | YNCE0008C | tQ(UUG)E2 | tRNA gene | 131082..131153 | - | |
| V | YNCE0009C | tK(CUU)E1 | tRNA gene | 135425..135497 | - | |
| V | YNCE0010W | tR(UCU)E | tRNA gene | 138666..138737 | + | |
| V | YNCE0011C | SNR14 | snR14 | snRNA gene | 167427..167586 | - |
| V | YNCE0012W | tE(UUC)E1 | tRNA gene | 177099..177170 | + | |
| V | YNCE0013W | tH(GUG)E1 | tRNA gene | 207357..207428 | + | |
| V | YNCE0014W | tQ(UUG)E1 | tRNA gene | 250286..250357 | + | |
| V | YNCE0015C | SUP19 | tS(UGA)E | tRNA gene | 288443..288524 | - |
| V | YNCE0016C | tA(UGC)E | tRNA gene | 312023..312095 | - | |
| V | YNCE0017W | SRG1 | ncRNA gene | 322212..322762 | + | |
| V | YNCE0018W | tE(UUC)E2 | tRNA gene | 354934..355005 | + | |
| V | YNCE0019W | SNR4 | snR4 | snoRNA gene | 424698..424883 | + |
| V | YNCE0020C | SNR52 | snR52 | snoRNA gene | 431129..431220 | - |
| V | YNCE0021C | tH(GUG)E2 | tRNA gene | 434541..434612 | - | |
| V | YNCE0022C | tK(CUU)E2 | tRNA gene | 435752..435824 | - | |
| V | YNCE0023W | tV(AAC)E1 | tRNA gene | 438700..438773 | + | |
| V | YNCE0024W | SCR1 | ncRNA gene | 441987..442508 | + | |
| V | YNCE0025C | tI(AAU)E1 | tRNA gene | 443202..443275 | - | |
| V | YNCE0026W | tV(AAC)E2 | tRNA gene | 469457..469530 | + | |
| V | YNCE0027C | tE(UUC)E3 | tRNA gene | 487331..487402 | - | |
| V | YNCE0028C | tR(ACG)E | tRNA gene | 492352..492424 | - | |
| V | YNCE0029C | tI(AAU)E2 | tRNA gene | 551285..551358 | - | |
| VI | YNCF0001C | RUF21 | ncRNA gene | 57815..58521 | - | |
| VI | YNCF0002W | SUF9 | tP(UGG)F | tRNA gene | 101376..101478 | + |
| VI | YNCF0003C | RUF20 | ncRNA gene | 131061..131503 | - | |
| VI | YNCF0004C | tN(GUU)F | tRNA gene | 137486..137559 | - | |
| VI | YNCF0005C | tF(GAA)F | tRNA gene | 157916..158007 | - | |
| VI | YNCF0006W | SUF20 | tG(GCC)F1 | tRNA gene | 162228..162298 | + |
| VI | YNCF0007W | SUP11 | tY(GUA)F1 | tRNA gene | 167437..167525 | + |
| VI | YNCF0008C | tG(GCC)F2 | tRNA gene | 180974..181044 | - | |
| VI | YNCF0009C | tS(GCU)F | tRNA gene | 191513..191613 | - | |
| VI | YNCF0010C | RUF22 | ncRNA gene | 199299..199813 | - | |
| VI | YNCF0011C | tA(AGC)F | tRNA gene | 204924..204996 | - | |
| VI | YNCF0012C | SUP6 | tY(GUA)F2 | tRNA gene | 210619..210707 | - |
| VI | YNCF0013W | RUF23 | ncRNA gene | 221714..221967 | + | |
| VI | YNCF0014C | tK(CUU)F | tRNA gene | 226688..226760 | - | |
| VII | YNCG0001C | RME3 | ncRNA gene | 33109..35013 | - | |
| VII | YNCG0002C | tV(AAC)G3 | tRNA gene | 73829..73902 | - | |
| VII | YNCG0003C | tH(GUG)G1 | tRNA gene | 110625..110696 | - | |
| VII | YNCG0004W | tK(UUU)G1 | tRNA gene | 115488..115583 | + | |
| VII | YNCG0005W | tK(CUU)G1 | tRNA gene | 122269..122341 | + | |
| VII | YNCG0006C | RME2 | ncRNA gene | 141898..144120 | - | |
| VII | YNCG0007C | tK(CUU)G2 | tRNA gene | 185714..185786 | - | |
| VII | YNCG0008W | tL(CAA)G1 | tRNA gene | 205521..205634 | + | |
| VII | YNCG0009C | tW(CCA)G1 | tRNA gene | 287350..287455 | - | |
| VII | YNCG0010W | SNR82 | snR82 | snoRNA gene | 316788..317055 | + |
| VII | YNCG0011W | tH(GUG)G2 | tRNA gene | 319781..319852 | + | |
| VII | YNCG0012W | SOE1 | tE(UUC)G1 | tRNA gene | 328583..328654 | + |
| VII | YNCG0013W | SNR10 | snR10 | snoRNA gene | 345986..346230 | + |
| VII | YNCG0014C | SNR39 | snR39 | snoRNA gene | 365163..365251 | - |
| VII | YNCG0015C | SNR39B | snR39B | snoRNA gene | 366374..366469 | - |
| VII | YNCG0016C | tE(UUC)G2 | tRNA gene | 401527..401598 | - | |
| VII | YNCG0017W | tR(UCU)G1 | tRNA gene | 405470..405541 | + | |
| VII | YNCG0018C | tV(AAC)G1 | tRNA gene | 412294..412367 | - | |
| VII | YNCG0019W | SUP54 | tL(CAA)G2 | tRNA gene | 423092..423205 | + |
| VII | YNCG0020C | tF(GAA)G | tRNA gene | 440716..440807 | - | |
| VII | YNCG0021W | tD(GUC)G1 | tRNA gene | 531610..531681 | + | |
| VII | YNCG0022W | tE(UUC)G3 | tRNA gene | 541850..541921 | + | |
| VII | YNCG0023C | tD(GUC)G2 | tRNA gene | 544577..544648 | - | |
| VII | YNCG0024W | SNR46 | snR46 | snoRNA gene | 545370..545566 | + |
| VII | YNCG0025C | tS(AGA)G | tRNA gene | 561662..561743 | - | |
| VII | YNCG0026W | SNR48 | snR48 | snoRNA gene | 609584..609696 | + |
| VII | YNCG0027W | tT(UGU)G1 | tRNA gene | 661749..661820 | + | |
| VII | YNCG0028W | tL(GAG)G | tRNA gene | 700675..700756 | + | |
| VII | YNCG0029C | tK(UUU)G2 | tRNA gene | 700953..701048 | - | |
| VII | YNCG0030C | tC(GCA)G | tRNA gene | 707108..707179 | - | |
| VII | YNCG0031W | tN(GUU)G | tRNA gene | 731137..731210 | + | |
| VII | YNCG0032W | tR(UCU)G3 | tRNA gene | 736340..736411 | + | |
| VII | YNCG0033W | tI(AAU)G | tRNA gene | 739122..739195 | + | |
| VII | YNCG0034W | tA(AGC)G | tRNA gene | 774349..774421 | + | |
| VII | YNCG0035W | SUF4 | tG(UCC)G | tRNA gene | 779616..779687 | + |
| VII | YNCG0036W | tA(UGC)G | tRNA gene | 794417..794489 | + | |
| VII | YNCG0037W | tV(AAC)G2 | tRNA gene | 823482..823555 | + | |
| VII | YNCG0038C | tR(UCU)G2 | tRNA gene | 828723..828794 | - | |
| VII | YNCG0039W | tG(GCC)G1 | tRNA gene | 845649..845719 | + | |
| VII | YNCG0040C | tL(CAA)G3 | tRNA gene | 857378..857491 | - | |
| VII | YNCG0041W | tK(CUU)G3 | tRNA gene | 876394..876466 | + | |
| VII | YNCG0042C | tW(CCA)G2 | tRNA gene | 878710..878815 | - | |
| VII | YNCG0043C | tG(GCC)G2 | tRNA gene | 930953..931023 | - | |
| VII | YNCG0044C | SNR7-L | snR7-L | snRNA gene | 939459..939672 | - |
| VII | YNCG0045C | SNR7-S | snR7-S | snRNA gene | 939494..939672 | - |
| VII | YNCG0046W | tT(UGU)G2 | tRNA gene | 1004216..1004287 | + | |
| VIII | YNCH0001W | tH(GUG)H | tRNA gene | 62755..62826 | + | |
| VIII | YNCH0002C | tV(AAC)H | tRNA gene | 85298..85371 | - | |
| VIII | YNCH0003C | tT(AGU)H | tRNA gene | 116107..116179 | - | |
| VIII | YNCH0004C | tS(AGA)H | tRNA gene | 133026..133107 | - | |
| VIII | YNCH0005W | tQ(UUG)H | tRNA gene | 134321..134392 | + | |
| VIII | YNCH0006C | tA(AGC)H | tRNA gene | 146242..146314 | - | |
| VIII | YNCH0007W | RUF5-1 | ncRNA gene | 212409..213118 | + | |
| VIII | YNCH0008W | RUF5-2 | ncRNA gene | 214407..215116 | + | |
| VIII | YNCH0009C | tF(GAA)H1 | tRNA gene | 237848..237939 | - | |
| VIII | YNCH0010C | tF(GAA)H2 | tRNA gene | 358478..358569 | - | |
| VIII | YNCH0011W | SUT169 | ncRNA gene | 378254..379237 | + | |
| VIII | YNCH0012W | SNR32 | snR32 | snoRNA gene | 381540..381727 | + |
| VIII | YNCH0013C | SUF8 | tP(UGG)H | tRNA gene | 388893..388995 | - |
| VIII | YNCH0014W | SNR71 | snR71 | snoRNA gene | 411228..411317 | + |
| VIII | YNCH0015W | tT(UGU)H | tRNA gene | 466990..467061 | + | |
| VIII | YNCH0016C | tV(CAC)H | tRNA gene | 475706..475778 | - | |
| IX | YNCI0001W | SNR68 | snR68 | snoRNA gene | 97111..97246 | + |
| IX | YNCI0002W | tT(AGU)I1 | tRNA gene | 175031..175103 | + | |
| IX | YNCI0003C | tI(AAU)I1 | tRNA gene | 183440..183513 | - | |
| IX | YNCI0004W | tE(CUC)I | tRNA gene | 197592..197663 | + | |
| IX | YNCI0005W | tI(AAU)I2 | tRNA gene | 210665..210738 | + | |
| IX | YNCI0006W | SUP17 | tS(UGA)I | tRNA gene | 248850..248931 | + |
| IX | YNCI0007C | tK(CUU)I | tRNA gene | 300228..300300 | - | |
| IX | YNCI0008C | tD(GUC)I1 | tRNA gene | 324303..324374 | - | |
| IX | YNCI0009W | tT(AGU)I2 | tRNA gene | 325748..325820 | + | |
| IX | YNCI0010C | tD(GUC)I2 | tRNA gene | 336349..336420 | - | |
| IX | YNCI0011W | tE(UUC)I | tRNA gene | 370417..370488 | + | |
| IX | YNCI0012 | ICR1 | ncRNA gene | 393884..397082 | - | |
| IX | YNCI0013W | PWR1 | ncRNA gene | 395999..396939 | + | |
| X | YNCJ0001C | tT(AGU)J | tRNA gene | 59100..59172 | - | |
| X | YNCJ0002C | tE(UUC)J | tRNA gene | 115939..116010 | - | |
| X | YNCJ0003C | SNR128 | snR128 | snoRNA gene | 139566..139691 | - |
| X | YNCJ0004C | SNR190 | snR190 | snoRNA gene | 139761..139950 | - |
| X | YNCJ0005C | tA(AGC)J | tRNA gene | 197313..197385 | - | |
| X | YNCJ0006W | tD(GUC)J1 | tRNA gene | 204735..204806 | + | |
| X | YNCJ0007C | SNR37 | snR37 | snoRNA gene | 228094..228479 | - |
| X | YNCJ0008W | tR(ACG)J | tRNA gene | 233939..234011 | + | |
| X | YNCJ0009C | SNR60 | snR60 | snoRNA gene | 349130..349233 | - |
| X | YNCJ0010W | SUP7 | tY(GUA)J1 | tRNA gene | 354244..354332 | + |
| X | YNCJ0011W | tR(UCU)J1 | tRNA gene | 355374..355445 | + | |
| X | YNCJ0012W | tD(GUC)J2 | tRNA gene | 355456..355527 | + | |
| X | YNCJ0013C | tD(GUC)J3 | tRNA gene | 374424..374495 | - | |
| X | YNCJ0014C | tR(UCU)J2 | tRNA gene | 374506..374577 | - | |
| X | YNCJ0015W | tV(AAC)J | tRNA gene | 378360..378433 | + | |
| X | YNCJ0016C | EMT5 | tM(CAU)J1 | tRNA gene | 391043..391115 | - |
| X | YNCJ0017C | tG(GCC)J1 | tRNA gene | 396726..396796 | - | |
| X | YNCJ0018W | tK(CUU)J | tRNA gene | 414966..415038 | + | |
| X | YNCJ0019C | tW(CCA)J | tRNA gene | 415931..416036 | - | |
| X | YNCJ0020W | EMT3 | tM(CAU)J2 | tRNA gene | 422937..423009 | + |
| X | YNCJ0021C | SUP51 | tL(UAA)J | tRNA gene | 424432..424515 | - |
| X | YNCJ0022C | IMT3 | tM(CAU)J3 | tRNA gene | 517813..517884 | - |
| X | YNCJ0023C | tS(AGA)J | tRNA gene | 524012..524093 | - | |
| X | YNCJ0024W | SUF23 | tG(GCC)J2 | tRNA gene | 531828..531898 | + |
| X | YNCJ0025W | HSX1 | tR(CCU)J | tRNA gene | 538555..538626 | + |
| X | YNCJ0026W | tD(GUC)J4 | tRNA gene | 541508..541579 | + | |
| X | YNCJ0027C | SUP4 | tY(GUA)J2 | tRNA gene | 542956..543044 | - |
| X | YNCJ0028C | IRT1 | ncRNA gene | 605936..607424 | - | |
| X | YNCJ0029W | tL(UAG)J | tRNA gene | 617919..618019 | + | |
| X | YNCJ0030W | SNR3 | snR3 | snoRNA gene | 663749..663942 | + |
| XI | YNCK0001W | SNR64 | snR64 | snoRNA gene | 38811..38911 | + |
| XI | YNCK0002C | TRT2 | tT(CGU)K | tRNA gene | 46735..46806 | - |
| XI | YNCK0003W | tN(GUU)K | tRNA gene | 74624..74697 | + | |
| XI | YNCK0004W | tL(UAA)K | tRNA gene | 84208..84291 | + | |
| XI | YNCK0005C | tE(UUC)K | tRNA gene | 141018..141089 | - | |
| XI | YNCK0006C | tR(UCU)K | tRNA gene | 162487..162558 | - | |
| XI | YNCK0007W | tK(CUU)K | tRNA gene | 202999..203071 | + | |
| XI | YNCK0008W | tA(AGC)K1 | tRNA gene | 219895..219967 | + | |
| XI | YNCK0009W | SNR38 | snR38 | snoRNA gene | 283185..283279 | + |
| XI | YNCK0010W | tW(CCA)K | tRNA gene | 302918..303023 | + | |
| XI | YNCK0011C | tV(AAC)K1 | tRNA gene | 308144..308217 | - | |
| XI | YNCK0012C | tH(GUG)K | tRNA gene | 313401..313472 | - | |
| XI | YNCK0013W | SNR69 | snR69 | snoRNA gene | 364776..364876 | + |
| XI | YNCK0014W | tV(AAC)K2 | tRNA gene | 379680..379753 | + | |
| XI | YNCK0015C | SNR87 | snR87 | snoRNA gene | 431030..431138 | - |
| XI | YNCK0016W | tL(CAA)K | tRNA gene | 458557..458670 | + | |
| XI | YNCK0017W | tR(ACG)K | tRNA gene | 490968..491040 | + | |
| XI | YNCK0018C | tD(GUC)K | tRNA gene | 513332..513403 | - | |
| XI | YNCK0019W | tA(AGC)K2 | tRNA gene | 517988..518060 | + | |
| XI | YNCK0020C | SNR42 | snR42 | snoRNA gene | 559016..559366 | - |
| XI | YNCK0021W | tK(UUU)K | tRNA gene | 578965..579060 | + | |
| XII | YNCL0001W | tP(UGG)L | tRNA gene | 92548..92650 | + | |
| XII | YNCL0002C | tS(AGA)L | tRNA gene | 167944..168025 | - | |
| XII | YNCL0003W | SNR30 | snR30 | snoRNA gene | 198784..199389 | + |
| XII | YNCL0004C | tA(UGC)L | tRNA gene | 214883..214955 | - | |
| XII | YNCL0005C | SNR79 | snR79 | snoRNA gene | 348427..348510 | - |
| XII | YNCL0006W | SNR6 | snR6 | snRNA gene | 366235..366346 | + |
| XII | YNCL0007W | tR(ACG)L | tRNA gene | 374355..374427 | + | |
| XII | YNCL0008W | tD(GUC)L1 | tRNA gene | 427132..427203 | + | |
| XII | YNCL0009C | tQ(UUG)L | tRNA gene | 448650..448721 | - | |
| XII | YNCL0010C | RDN37-1 | rRNA gene | 451575..458432 | - | |
| XII | YNCL0011C | ETS2-1 | rRNA gene | 451575..451785 | - | |
| XII | YNCL0012C | RDN25-1 | rRNA gene | 451786..455181 | - | |
| XII | YNCL0013C | ITS2-1 | rRNA gene | 455182..455413 | - | |
| XII | YNCL0014C | RDN58-1 | rRNA gene | 455414..455571 | - | |
| XII | YNCL0015C | ITS1-1 | rRNA gene | 455572..455932 | - | |
| XII | YNCL0016C | RDN18-1 | rRNA gene | 455933..457732 | - | |
| XII | YNCL0017C | ETS1-1 | rRNA gene | 457733..458432 | - | |
| XII | YNCL0018W | RDN5-1 | rRNA gene | 459676..459796 | + | |
| XII | YNCL0019C | ETS2-2 | rRNA gene | 460712..460922 | - | |
| XII | YNCL0020C | RDN37-2 | rRNA gene | 460712..467569 | - | |
| XII | YNCL0021C | RDN25-2 | rRNA gene | 460923..464318 | - | |
| XII | YNCL0022C | ITS2-2 | rRNA gene | 464319..464550 | - | |
| XII | YNCL0023C | RDN58-2 | rRNA gene | 464551..464708 | - | |
| XII | YNCL0024C | ITS1-2 | rRNA gene | 464709..465069 | - | |
| XII | YNCL0025C | RDN18-2 | rRNA gene | 465070..466869 | - | |
| XII | YNCL0026C | ETS1-2 | rRNA gene | 466870..467569 | - | |
| XII | YNCL0027W | RDN5-2 | rRNA gene | 468813..468931 | + | |
| XII | YNCL0028W | RDN5-3 | rRNA gene | 472465..472583 | + | |
| XII | YNCL0029W | RDN5-4 | rRNA gene | 482045..482163 | + | |
| XII | YNCL0030W | RDN5-5 | rRNA gene | 485697..485815 | + | |
| XII | YNCL0031W | RDN5-6 | rRNA gene | 489349..489469 | + | |
| XII | YNCL0032C | tL(UAG)L1 | tRNA gene | 592519..592619 | - | |
| XII | YNCL0033C | tI(UAU)L | tRNA gene | 605300..605432 | - | |
| XII | YNCL0034W | tL(CAA)L | tRNA gene | 628383..628497 | + | |
| XII | YNCL0035C | tA(AGC)L | tRNA gene | 656934..657006 | - | |
| XII | YNCL0036C | tV(AAC)L | tRNA gene | 687859..687932 | - | |
| XII | YNCL0037W | tL(UAG)L2 | tRNA gene | 732090..732190 | + | |
| XII | YNCL0038W | tI(AAU)L1 | tRNA gene | 734802..734875 | + | |
| XII | YNCL0039W | tX(XXX)L | tRNA gene | 784354..784453 | + | |
| XII | YNCL0040W | tD(GUC)L2 | tRNA gene | 793918..793989 | + | |
| XII | YNCL0041C | SNR61 | snR61 | snoRNA gene | 794486..794575 | - |
| XII | YNCL0042C | SNR55 | snR55 | snoRNA gene | 794697..794794 | - |
| XII | YNCL0043C | SNR57 | snR57 | snoRNA gene | 794937..795024 | - |
| XII | YNCL0044W | tE(UUC)L | tRNA gene | 797178..797249 | + | |
| XII | YNCL0045W | TRR4 | tR(CCG)L | tRNA gene | 818609..818680 | + |
| XII | YNCL0046W | SNR44 | snR44 | snoRNA gene | 856710..856920 | + |
| XII | YNCL0047W | tK(UUU)L | tRNA gene | 875376..875471 | + | |
| XII | YNCL0048W | SNR34 | snR34 | snoRNA gene | 899180..899382 | + |
| XII | YNCL0049C | tL(UAA)L | tRNA gene | 962972..963055 | - | |
| XII | YNCL0050C | tN(GUU)L | tRNA gene | 975983..976056 | - | |
| XII | YNCL0051C | tI(AAU)L2 | tRNA gene | 1052071..1052144 | - | |
| XIII | YNCM0001W | PHO84 lncRNA | ncRNA gene | 23564..26578 | + | |
| XIII | YNCM0002C | SNR85 | snR85 | snoRNA gene | 67768..67938 | - |
| XIII | YNCM0003W | ZOD1 | ncRNA gene | 91970..92027 | + | |
| XIII | YNCM0004C | tR(UCU)M2 | tRNA gene | 131825..131896 | - | |
| XIII | YNCM0005C | SNR54 | snR54 | snoRNA gene | 163535..163620 | - |
| XIII | YNCM0006W | SUP5 | tY(GUA)M1 | tRNA gene | 168795..168883 | + |
| XIII | YNCM0007C | tG(GCC)M | tRNA gene | 183898..183968 | - | |
| XIII | YNCM0008C | SUF7 | tP(UGG)M | tRNA gene | 196068..196170 | - |
| XIII | YNCM0009C | tS(AGA)M | tRNA gene | 259158..259239 | - | |
| XIII | YNCM0010W | tE(UUC)M | tRNA gene | 290801..290872 | + | |
| XIII | YNCM0011W | SNR78 | snR78 | snoRNA gene | 297278..297364 | + |
| XIII | YNCM0012W | SNR77 | snR77 | snoRNA gene | 297506..297593 | + |
| XIII | YNCM0013W | SNR76 | snR76 | snoRNA gene | 297725..297833 | + |
| XIII | YNCM0014W | SNR75 | snR75 | snoRNA gene | 297918..298006 | + |
| XIII | YNCM0015W | SNR74 | snR74 | snoRNA gene | 298138..298225 | + |
| XIII | YNCM0016W | SNR73 | snR73 | snoRNA gene | 298307..298412 | + |
| XIII | YNCM0017W | SNR72 | snR72 | snoRNA gene | 298554..298651 | + |
| XIII | YNCM0018C | tA(AGC)M1 | tRNA gene | 321147..321219 | - | |
| XIII | YNCM0019W | tF(GAA)M | tRNA gene | 352280..352370 | + | |
| XIII | YNCM0020W | tH(GUG)M | tRNA gene | 363064..363135 | + | |
| XIII | YNCM0021C | tV(AAC)M1 | tRNA gene | 372445..372518 | - | |
| XIII | YNCM0022C | tW(CCA)M | tRNA gene | 379303..379408 | - | |
| XIII | YNCM0023C | tV(AAC)M2 | tRNA gene | 420588..420661 | - | |
| XIII | YNCM0024W | tD(GUC)M | tRNA gene | 463554..463625 | + | |
| XIII | YNCM0025C | tK(CUU)M | tRNA gene | 480621..480693 | - | |
| XIII | YNCM0026C | SNR24 | snR24 | snoRNA gene | 499984..500072 | - |
| XIII | YNCM0027W | tL(CAA)M | tRNA gene | 504895..505008 | + | |
| XIII | YNCM0028C | EMT4 | tM(CAU)M | tRNA gene | 572883..572955 | - |
| XIII | YNCM0029C | tV(AAC)M3 | tRNA gene | 586636..586709 | - | |
| XIII | YNCM0030W | SNR83 | snR83 | snoRNA gene | 626349..626654 | + |
| XIII | YNCM0031W | SNR11 | snR11 | snoRNA gene | 652275..652532 | + |
| XIII | YNCM0032C | RNA170 | ncRNA gene | 667288..667456 | - | |
| XIII | YNCM0033C | tR(UCU)M1 | tRNA gene | 747892..747963 | - | |
| XIII | YNCM0034C | SNR86 | snR86 | snoRNA gene | 762110..763113 | - |
| XIII | YNCM0035C | tA(AGC)M2 | tRNA gene | 768369..768441 | - | |
| XIII | YNCM0036C | CDC65 | tQ(CUG)M | tRNA gene | 808246..808317 | - |
| XIII | YNCM0037W | SUP8 | tY(GUA)M2 | tRNA gene | 837928..838016 | + |
| XIV | YNCN0001W | SNR40 | snR40 | snoRNA gene | 89210..89306 | + |
| XIV | YNCN0002C | SUF6 | tG(UCC)N | tRNA gene | 96241..96312 | - |
| XIV | YNCN0003W | tN(GUU)N1 | tRNA gene | 102716..102789 | + | |
| XIV | YNCN0004W | tT(AGU)N1 | tRNA gene | 104805..104877 | + | |
| XIV | YNCN0005C | SNR19 | snR19 | snRNA gene | 230105..230672 | - |
| XIV | YNCN0006W | tF(GAA)N | tRNA gene | 374869..374959 | + | |
| XIV | YNCN0007W | tL(CAA)N | tRNA gene | 443006..443119 | + | |
| XIV | YNCN0008C | tD(GUC)N | tRNA gene | 519099..519169 | - | |
| XIV | YNCN0009W | tP(UGG)N1 | tRNA gene | 547094..547196 | + | |
| XIV | YNCN0010C | tT(AGU)N2 | tRNA gene | 560693..560765 | - | |
| XIV | YNCN0011W | tP(UGG)N2 | tRNA gene | 568115..568217 | + | |
| XIV | YNCN0012C | tI(AAU)N1 | tRNA gene | 569867..569940 | - | |
| XIV | YNCN0013W | NME1 | snoRNA gene | 585587..585926 | + | |
| XIV | YNCN0014W | SNR66 | snR66 | snoRNA gene | 586090..586175 | + |
| XIV | YNCN0015W | tI(AAU)N2 | tRNA gene | 602312..602385 | + | |
| XIV | YNCN0016C | SUF10 | tP(AGG)N | tRNA gene | 631846..631917 | - |
| XIV | YNCN0017W | tN(GUU)N2 | tRNA gene | 632599..632672 | + | |
| XIV | YNCN0018W | SNR49 | snR49 | snoRNA gene | 716120..716284 | + |
| XIV | YNCN0019C | SNR191 | snR191 | snoRNA gene | 721938..722211 | - |
| XIV | YNCN0020C | tL(UAA)N | tRNA gene | 726134..726217 | - | |
| XV | YNCO0001C | SUF1 | tG(UCC)O | tRNA gene | 110962..111033 | - |
| XV | YNCO0002W | tT(AGU)O1 | tRNA gene | 113802..113874 | + | |
| XV | YNCO0003C | SNR58 | snR58 | snoRNA gene | 136088..136183 | - |
| XV | YNCO0004C | tG(GCC)O1 | tRNA gene | 226611..226681 | - | |
| XV | YNCO0005W | tN(GUU)O1 | tRNA gene | 228331..228404 | + | |
| XV | YNCO0006W | SNR81 | snR81 | snoRNA gene | 234346..234546 | + |
| XV | YNCO0007W | SNR50 | snR50 | snoRNA gene | 259489..259578 | + |
| XV | YNCO0008W | tS(GCU)O | tRNA gene | 274673..274773 | + | |
| XV | YNCO0009W | SUF17 | tG(GCC)O2 | tRNA gene | 282164..282234 | + |
| XV | YNCO0010W | SUP3 | tY(GUA)O | tRNA gene | 288192..288280 | + |
| XV | YNCO0011W | tP(UGG)O1 | tRNA gene | 301097..301198 | + | |
| XV | YNCO0012C | tR(ACG)O | tRNA gene | 340299..340371 | - | |
| XV | YNCO0013C | tT(AGU)O2 | tRNA gene | 354041..354113 | - | |
| XV | YNCO0014C | SNR9 | snR9 | snoRNA gene | 407948..408134 | - |
| XV | YNCO0015C | SNR62 | snR62 | snoRNA gene | 409765..409864 | - |
| XV | YNCO0016W | tK(UUU)O | tRNA gene | 438643..438738 | + | |
| XV | YNCO0017W | SUF11 | tP(UGG)O2 | tRNA gene | 464450..464551 | + |
| XV | YNCO0018W | tN(GUU)O2 | tRNA gene | 487439..487512 | + | |
| XV | YNCO0019W | tD(GUC)O | tRNA gene | 571958..572029 | + | |
| XV | YNCO0020C | SUF5 | tG(CCC)O | tRNA gene | 594354..594425 | - |
| XV | YNCO0021C | tV(AAC)O | tRNA gene | 663812..663885 | - | |
| XV | YNCO0022C | SNR36 | snR36 | snoRNA gene | 680685..680866 | - |
| XV | YNCO0023W | IMT1 | tM(CAU)O1 | tRNA gene | 710201..710272 | + |
| XV | YNCO0024C | SNR35 | snR35 | snoRNA gene | 759326..759529 | - |
| XV | YNCO0025W | SNR17A | snR17a | snoRNA gene | 780107..780596 | + |
| XV | YNCO0026W | SNR8 | snR8 | snoRNA gene | 832332..832521 | + |
| XV | YNCO0027C | SNR31 | snR31 | snoRNA gene | 841958..842182 | - |
| XV | YNCO0028W | SNR5 | snR5 | snoRNA gene | 842403..842606 | + |
| XV | YNCO0029C | tA(UGC)O | tRNA gene | 854187..854259 | - | |
| XV | YNCO0030W | EMT2 | tM(CAU)O2 | tRNA gene | 976421..976493 | + |
| XVI | YNCP0001C | tW(CCA)P | tRNA gene | 56169..56274 | - | |
| XVI | YNCP0002W | GAL4 lncRNA | ncRNA gene | 79562..82648 | + | |
| XVI | YNCP0003W | SNR59 | snR59 | snoRNA gene | 173827..173904 | + |
| XVI | YNCP0004C | tE(UUC)P | tRNA gene | 210192..210263 | - | |
| XVI | YNCP0005C | SNR17B | snR17b | snoRNA gene | 281056..281517 | - |
| XVI | YNCP0006C | IMT2 | tM(CAU)P | tRNA gene | 338848..338919 | - |
| XVI | YNCP0007C | tC(GCA)P1 | tRNA gene | 435893..435964 | - | |
| XVI | YNCP0008C | tF(GAA)P1 | tRNA gene | 560198..560289 | - | |
| XVI | YNCP0009W | tG(GCC)P1 | tRNA gene | 572269..572339 | + | |
| XVI | YNCP0010W | tK(CUU)P | tRNA gene | 582062..582134 | + | |
| XVI | YNCP0011C | tF(GAA)P2 | tRNA gene | 622540..622631 | - | |
| XVI | YNCP0012W | SUP16 | tS(UGA)P | tRNA gene | 689565..689646 | + |
| XVI | YNCP0013C | SNR51 | snR51 | snoRNA gene | 718700..718806 | - |
| XVI | YNCP0014C | SNR70 | snR70 | snoRNA gene | 718887..719050 | - |
| XVI | YNCP0015C | SNR41 | snR41 | snoRNA gene | 719148..719242 | - |
| XVI | YNCP0016W | tT(UGU)P | tRNA gene | 744284..744355 | + | |
| XVI | YNCP0017C | tK(UUU)P | tRNA gene | 769207..769302 | - | |
| XVI | YNCP0018C | tC(GCA)P2 | tRNA gene | 775765..775836 | - | |
| XVI | YNCP0019W | tN(GUU)P | tRNA gene | 810676..810749 | + | |
| XVI | YNCP0020W | tI(AAU)P1 | tRNA gene | 819529..819602 | + | |
| XVI | YNCP0021W | SNR45 | snR45 | snoRNA gene | 821732..821903 | + |
| XVI | YNCP0022W | tA(AGC)P | tRNA gene | 856902..856974 | + | |
| XVI | YNCP0023W | tG(GCC)P2 | tRNA gene | 860379..860449 | + | |
| XVI | YNCP0024C | tI(AAU)P2 | tRNA gene | 880296..880369 | - | |
| Mito | YNCQ0001W | tP(UGG)Q | tRNA gene | 731..802 | + | |
| Mito | YNCQ0002W | 15S_RRNA | Q0020 | rRNA gene | 6546..8194 | + |
| Mito | YNCQ0003W | tW(UCA)Q | tRNA gene | 9374..9447 | + | |
| Mito | YNCQ0004W | tE(UUC)Q | tRNA gene | 35373..35444 | + | |
| Mito | YNCQ0005W | tS(UGA)Q2 | tRNA gene | 48201..48290 | + | |
| Mito | YNCQ0006W | 21S_RRNA | Q0158 | rRNA gene | 58009..62447 | + |
| Mito | YNCQ0007W | tT(UGU)Q1 | tRNA gene | 63862..63937 | + | |
| Mito | YNCQ0008W | tC(GCA)Q | tRNA gene | 64415..64490 | + | |
| Mito | YNCQ0009W | tH(GUG)Q | tRNA gene | 64596..64670 | + | |
| Mito | YNCQ0010W | tL(UAA)Q | tRNA gene | 66095..66179 | + | |
| Mito | YNCQ0011W | tQ(UUG)Q | tRNA gene | 66210..66285 | + | |
| Mito | YNCQ0012W | tK(UUU)Q | tRNA gene | 67061..67134 | + | |
| Mito | YNCQ0013W | tR(UCU)Q1 | tRNA gene | 67309..67381 | + | |
| Mito | YNCQ0014W | tG(UCC)Q | tRNA gene | 67468..67542 | + | |
| Mito | YNCQ0015W | tD(GUC)Q | tRNA gene | 68322..68396 | + | |
| Mito | YNCQ0016W | tS(GCU)Q1 | tRNA gene | 69203..69288 | + | |
| Mito | YNCQ0017W | tR(ACG)Q2 | tRNA gene | 69289..69362 | + | |
| Mito | YNCQ0018W | tA(UGC)Q | tRNA gene | 69846..69921 | + | |
| Mito | YNCQ0019W | tI(GAU)Q | tRNA gene | 70162..70237 | + | |
| Mito | YNCQ0020W | tY(GUA)Q | tRNA gene | 70824..70907 | + | |
| Mito | YNCQ0021W | tN(GUU)Q | tRNA gene | 71433..71503 | + | |
| Mito | YNCQ0022W | tM(CAU)Q1 | tRNA gene | 72630..72705 | + | |
| Mito | YNCQ0023W | tF(GAA)Q | tRNA gene | 77431..77505 | + | |
| Mito | YNCQ0024C | tT(UAG)Q2 | tRNA gene | 78089..78162 | - | |
| Mito | YNCQ0025W | tV(UAC)Q | tRNA gene | 78533..78608 | + | |
| Mito | YNCQ0026W | tM(CAU)Q2 | tRNA gene | 85035..85112 | + | |
| Mito | YNCQ0027W | RPM1 | Q0285 | ncRNA gene | 85295..85777 | + |
