Difference between revisions of "General Topics"
(→Fungal genome database projects) |
(→Fungal genome sequencing projects) |
||
Line 88: | Line 88: | ||
=Fungal genome sequencing projects= | =Fungal genome sequencing projects= | ||
+ | ==Euascomycota== | ||
*[http://www.tigr.org/tdb/e2k1/afu1/ <i>Aspergillus fumigatus</i>] | *[http://www.tigr.org/tdb/e2k1/afu1/ <i>Aspergillus fumigatus</i>] | ||
− | |||
*[http://www.broad.mit.edu/annotation/fungi/aspergillus/ <i>Aspergillus nidulans</i>] | *[http://www.broad.mit.edu/annotation/fungi/aspergillus/ <i>Aspergillus nidulans</i>] | ||
+ | *[http://www.broad.mit.edu/annotation/fungi/magnaporthe/ <i>Magnaporthe grisea</i>] | ||
+ | *[http://www.broad.mit.edu/annotation/fungi/neurospora/ <i>Neurospora crassa</i>] | ||
− | + | ==Basidiomycota== | |
− | *[http://www.broad.mit.edu/annotation/ | + | * ''Cryptococcus'' |
+ | **[http://sequence-www.stanford.edu/group/C.neoformans/index.html ''Cryptococcus neoformans'' var. ''neoformans'' strain B3501], [http://www.tigr.org/tdb/e2k1/cna1/ ''Cryptococcus neoformans'' var. ''neoformans'' strain JEC21] | ||
+ | **[http://sequence-www.stanford.edu/group/C.neoformans/index.html ''Cryptococcus neoformans'' var. ''neoformans'' strain B3501], [http://www.tigr.org/tdb/e2k1/cna1/ ''Cryptococcus neoformans'' var. ''neoformans'' strain JEC21] | ||
+ | ** ''Cryptococcus neoformans'' var. ''grubbii'' H99 - [http://cneo.genetics.duke.edu/ Duke University], [http://www.broad.mit.edu/annotation/genome/cryptococcus_neoformans Fungal Genome Initiative] | ||
+ | ** ''Cryptococcus gattii'' R265 - [http://www.broad.mit.edu/annotation/genome/cryptococcus_neoformans_b Fungal Genome Initiative] | ||
+ | ** ''Cryptococcus gattii'' WM276 - [http://www.bcgsc.ca/project/cryptococcus/ Kronstad Lab/British Columbia Genome Sequencing Centre] | ||
− | *[http:// | + | ==Archiascomycota== |
+ | *[http://pgp.cchmc.org/ <i>Pneumocystis carinii</i>] | ||
− | *[http:// | + | ==Hemiascomycota== |
+ | * The [http://cbi.labri.fr/Genolevures/ Génolevures] project, featuring partial genomic sequence for 13 Hemiascomycete species | ||
− | * | + | ==Links== |
+ | * There is also [http://fungalgenomes.org/wiki/Fungal_Genome_Links list] of currently sequenced or in progress fungal genome projects with references. | ||
=Fungal genome database projects= | =Fungal genome database projects= |
Revision as of 00:20, 19 March 2007
Contents
[hide]General S. cerevisiae information
- Generally speaking:What are yeasts?
- Here are some pictures of yeast
- The Art of Brewing, courtesy of Miller Brewing Company.
- Information about yeast and bread baking, from Fleischmann's and Red Star Yeast companies.
- An introduction to yeast, the most ideal eukaryotic microorganism for biological studies.
- An updated version the yeast primer Getting Started with Yeast written by Fred Sherman.
- Yeast Molecular Biology: A Short Compendium on Basic Features and Novel Aspects written by Horst Feldmann at the University of Munich
- Download a guide to S.cerevisiae nomenclature, published in Trends in Genetics.
- A tutorial from the University of Saskatchewan provides an introduction to SGD and to S. cerevisiae molecular biology and genetics.
- SGD maintains a list of websites with relevance to S. cerevisiae molecular biology and genetics and to general molecular biology.
- Search the Yeast BioSci (a.k.a. BioNet) Electronic Conference
- Usenet group on yeast molecular biology: bionet.molbio.yeast
Educational resources
- Genetics Education Network Tom Manney's (Kansas State University) yeast experiments for undergrads and high school students. A well-done and informative web site for yeast in the classroom.
- Research Link 2000 Aimed at undergraduate classrooms, this is an offshoot of Tom Manney's yeast experiments. It also lists other model organisms.
- Using Yeast As An Ultraviolet Light Measurement Tool. This is a Tom Manney protocol rewritten by Kevin Conant, a participant in the Woodrow Wilson Biology Institute 1993.
- MendelWeb, an educational resource on the origins of classical genetics.
- National Science Teachers Association. Resources for all science teachers from kindergarten to college.
- National Association of Biology Teachers High school teachers predominate in this organization, but there are resources for post-secondary education as well.
- American Society for Microbiology. The ASM website lists resources in its education section. The ASM publishes numerous books on microbiology education at various levels.
- Discovering Genomics, Proteomics, and Bioinformatics This website describes a course and the accompanying textbook written by A. Malcolm Campbell and Laurie J. Heyer.
- Genome Consortium for Active Teaching (GCAT) Description of the consortium and how it is working to bring functional genomics methods into the undergraduate biology curriculum.
- MicroArray Genome Imaging and Clustering Tool (MAGIC) Open source software for analysis of large-scale gene expression datasets; developed by Laurie Heyer and her undergraduate students at Davidson College, North Carolina.
Schizosaccharomyces pombe information
- S. pombe genomic sequence published by V. Wood et al., Nature 415, 871-880 (2002)
- PomBase S. pombe database compiled at the Sanger Centre, UK
- Blast Server for S. pombe compiled at the Sanger Centre, UK
- General information about S. pombe from the Forsburg Lab
- S. pombe molecular genetics: plasmids, markers, maps and references from the Forsburg Lab
- An S. pombe nomenclature guide: S. pombe genes mapped to S. cerevisiae genes from the Forsburg Lab
Candida albicans information
- Candida albicans pages at the NRC/BRI
- Candida Genome Database at Stanford
- Candida information from the Stanford Genome Technology Center
- CandidaDB, a genomic database for C. albicans, part of the Galar Fungail Consortium project
- Candida albicans information server from University of Minnesota
- Candidiasis information at MEDLINE plus
- Annotation of the C. albicans genome from the Agabian Lab
Links to other fungal information
Fungal genome sequencing projects
Euascomycota
Basidiomycota
- Cryptococcus
- Cryptococcus neoformans var. neoformans strain B3501, Cryptococcus neoformans var. neoformans strain JEC21
- Cryptococcus neoformans var. neoformans strain B3501, Cryptococcus neoformans var. neoformans strain JEC21
- Cryptococcus neoformans var. grubbii H99 - Duke University, Fungal Genome Initiative
- Cryptococcus gattii R265 - Fungal Genome Initiative
- Cryptococcus gattii WM276 - Kronstad Lab/British Columbia Genome Sequencing Centre
Archiascomycota
Hemiascomycota
- The Génolevures project, featuring partial genomic sequence for 13 Hemiascomycete species
Links
- There is also list of currently sequenced or in progress fungal genome projects with references.
Fungal genome database projects
- CryptoBase, a scientific database resource at UCSF for C. neoformans var. grubii (serotype A)
- fungal.genome.duke.edu, a scientific database resource at Duke University providing Genome Browser, BLAST, and downloadable genome annotations for many fungal genomes.
Following is a list of sites that post biology related job openings. Please note that this is not a comprehensive list. Some of these sites may be free (may require registration) for job seekers, job posters or both.
- Open positions offered by Genetics Society of America
- Career Services offered by American Society for Cell Biology
- Career Resources offered by FASEB
- Job Openings offered by Society for Developmental Biology
- Science Careers and Science Next Wave offered by Science Magazine Online
- Nature Jobs offered by Nature Online
- Career Center offered by Biospace.com