Difference between revisions of "Details of 2024 Reference Genome Annotation Update R64.5"
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This annotation update included (details in table below): | This annotation update included (details in table below): | ||
*new ORFs: | *new ORFs: | ||
| + | **[https://www.yeastgenome.org/locus/YDL204W-A YDL204W-A] | ||
| + | **[https://www.yeastgenome.org/locus/YFR035W-A YFR035W-A] | ||
| + | **[https://www.yeastgenome.org/locus/YGR016C-A YGR016C-A] | ||
| + | **[https://www.yeastgenome.org/locus/YMR106W-A YMR106W-A] | ||
| + | **[https://www.yeastgenome.org/locus/YNL040C-A YNL040C-A] | ||
| + | **[https://www.yeastgenome.org/locus/YNL155C-A YNL155C-A] | ||
*new uORFs for 3 ORFs: | *new uORFs for 3 ORFs: | ||
| + | **[https://www.yeastgenome.org/locus/ATG12 ATG12/YBR217W] | ||
| + | **[https://www.yeastgenome.org/locus/ATG19 ATG19/YOL082W] | ||
| + | **[https://www.yeastgenome.org/locus/ATG5 ATG5/YPL149W] | ||
| + | **[https://www.yeastgenome.org/locus/ATG13 ATG13/YPR185W] | ||
| + | *move start downstream: | ||
| + | **[https://www.yeastgenome.org/locus/EFM4 EFM4/YIL064W] | ||
*1 ORF upgraded from Dubious to Verified: | *1 ORF upgraded from Dubious to Verified: | ||
| + | **[https://www.yeastgenome.org/locus/YIL059C YIL059C] | ||
| + | |||
==R64.5 Annotation update details== | ==R64.5 Annotation update details== | ||
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Revision as of 11:31, 18 June 2024
The S. cerevisiae strain S288C reference genome annotation was updated. The new genome annotation is release R64.5.1, dated 2024-05-29. Note that the underlying genome sequence itself was not altered. The chromosome sequences remain stable.
R64.5 Annotation update summary
This annotation update included (details in table below):
- new ORFs:
- new uORFs for 3 ORFs:
- move start downstream:
- 1 ORF upgraded from Dubious to Verified:
R64.5 Annotation update details
| Chr | Feature | Description of change | Reference |
|---|---|---|---|
| II | ATG12/YBR217W | New uORF chrII:657824..657835, partially overlaps CDS | Yang Y, et al. (2023) PMID:35363116 |
| IV | YDL204W-A | New ORF chrIV:94133..94285 | Wacholder A, et al. (2023) PMID:37164009 |
| VI | YFR035W-A | New ORF chrVI:226260..226550 | Wacholder A and Carvunis AR (2023) PMID:38048358 |
| VII | YGR016C-A | New ORF chrVII:523353..523246 | Wacholder A, et al. (2023) PMID:37164009,
Chang S, et al. (2023) PMID:37927910 |
| IX | EFM4/YIL064W | Move start 84 nucleotides downstream, new coordinates chrIX:242027..242716 | Hamey JJ, et al. (2024) PMID:38199565 |
| IX | YIL059C | Change ORF qualifier from Dubious to Verified because stable translation product detected | Wacholder A and Carvunis AR (2023) PMID:38048358 |
| XIII | YMR106W-A | New ORF chrXIII:480924..481187 | Wacholder A and Carvunis AR (2023) PMID:38048358 |
| XIV | YNL040C-A | New ORF chrXIV:552558..552478 | Wacholder A, et al. (2023) PMID:37164009 |
| XIV | YNL155C-A | New ORF chrXIV:342135..341911 | Wacholder A and Carvunis AR (2023) PMID:38048358 |
| XV | ATG19/YOL082W | New uORF chrXV:168632..168679 | Yang Y, et al. (2023) PMID:35363116 |
| XVI | ATG5/YPL149W | 4 new uORFs: chrXVI:271236..271277, chrXVI:271252..271302, chrXVI:271299..271307, chrXVI:271302..271307 | Yang Y, et al. (2023) PMID:35363116 |
| XVI | ATG13/YPR185W | New uORF chrXVI:907211..907351, partially overlaps CDS | Yang Y, et al. (2023) PMID:35363116 |
