Difference between revisions of "Systematic Sequencing Table"

From SGD-Wiki
Jump to: navigation, search
(→‎Saccharomyces cerevisiae chromosome statistics and retrieval options)
(→‎Saccharomyces cerevisiae chromosome statistics and retrieval options)
 
Line 15: Line 15:
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
[https://browse.yeastgenome.org/?loc=chrI%3A1..230218&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://jbrowse.yeastgenome.org/?loc=chrI%3A1..230218&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/seqTools?chr=1&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/seqTools?chr=1&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr01.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr01.fsa Download FASTA]
Line 26: Line 26:
 
| genuine strain [[Commonly_used_strains#S288C | S288C]]  
 
| genuine strain [[Commonly_used_strains#S288C | S288C]]  
 
|  
 
|  
−
[https://browse.yeastgenome.org/?loc=chrII%3A1..813184&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://jbrowse.yeastgenome.org/?loc=chrII%3A1..813184&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/seqTools?chr=2&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/seqTools?chr=2&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr02.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr02.fsa Download FASTA]
Line 37: Line 37:
 
| [[Commonly_used_strains#XJ24-24a | XJ24-24a]], [[Commonly_used_strains#AB972 | AB972]], [[Commonly_used_strains#A364A | A364A]], [[Commonly_used_strains#DC5 | DC5]]
 
| [[Commonly_used_strains#XJ24-24a | XJ24-24a]], [[Commonly_used_strains#AB972 | AB972]], [[Commonly_used_strains#A364A | A364A]], [[Commonly_used_strains#DC5 | DC5]]
 
|  
 
|  
−
[https://browse.yeastgenome.org/?loc=chrIII%3A1..316620&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://jbrowse.yeastgenome.org/?loc=chrIII%3A1..316620&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/seqTools?chr=3&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/seqTools?chr=3&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr03.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr03.fsa Download FASTA]
Line 52: Line 52:
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
[https://browse.yeastgenome.org/?loc=chrIV%3A1..1531933&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://jbrowse.yeastgenome.org/?loc=chrIV%3A1..1531933&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/seqTools?chr=4&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/seqTools?chr=4&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr04.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr04.fsa Download FASTA]
Line 63: Line 63:
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
[https://browse.yeastgenome.org/?loc=chrV%3A1..576874&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://jbrowse.yeastgenome.org/?loc=chrV%3A1..576874&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/seqTools?chr=5&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/seqTools?chr=5&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr05.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr05.fsa Download FASTA]
Line 74: Line 74:
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
[https://browse.yeastgenome.org/?loc=chrVI%3A1..270161&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://jbrowse.yeastgenome.org/?loc=chrVI%3A1..270161&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/seqTools?chr=6&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/seqTools?chr=6&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr06.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr06.fsa Download FASTA]
Line 85: Line 85:
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
|  
 
|  
−
[https://browse.yeastgenome.org/?loc=chrVII%3A1..1090940&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://jbrowse.yeastgenome.org/?loc=chrVII%3A1..1090940&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/seqTools?chr=7&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/seqTools?chr=7&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr07.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr07.fsa Download FASTA]
Line 96: Line 96:
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
[https://browse.yeastgenome.org/?loc=chrVII%3A1..562764&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://jbrowse.yeastgenome.org/?loc=chrVII%3A1..562764&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/seqTools?chr=8&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/seqTools?chr=8&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr08.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr08.fsa Download FASTA]
Line 107: Line 107:
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
[https://browse.yeastgenome.org/?loc=chrIX%3A1..439888&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://jbrowse.yeastgenome.org/?loc=chrIX%3A1..439888&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/seqTools?chr=9&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/seqTools?chr=9&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr09.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr09.fsa Download FASTA]
Line 118: Line 118:
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
|  
 
|  
−
[https://browse.yeastgenome.org/?loc=chrX%3A1..745751&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://jbrowse.yeastgenome.org/?loc=chrX%3A1..745751&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/seqTools?chr=10&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/seqTools?chr=10&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr10.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr10.fsa Download FASTA]
Line 129: Line 129:
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
|  
 
|  
−
[https://browse.yeastgenome.org/?loc=chrXI%3A1..666816&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://jbrowse.yeastgenome.org/?loc=chrXI%3A1..666816&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/seqTools?chr=11&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/seqTools?chr=11&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr11.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr11.fsa Download FASTA]
Line 141: Line 141:
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
[https://browse.yeastgenome.org/?loc=chrXII%3A1..1078177&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CDoube_strand_break_hotspots%2CXrn1-sensitive_unstable%20transcripts_XUTs%2CScGlycerolMedia%2C3'UTRs%2CPolII_occupancy_WT&highlight= JBrowse Viewer]
+
[https://jbrowse.yeastgenome.org/?loc=chrXII%3A1..1078177&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CDoube_strand_break_hotspots%2CXrn1-sensitive_unstable%20transcripts_XUTs%2CScGlycerolMedia%2C3'UTRs%2CPolII_occupancy_WT&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/seqTools?chr=12&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/seqTools?chr=12&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr12.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr12.fsa Download FASTA]
Line 151: Line 151:
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
[https://browse.yeastgenome.org/?loc=chrXIII%3A1..924431&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CDoube_strand_break_hotspots%2CXrn1-sensitive_unstable%20transcripts_XUTs%2CScGlycerolMedia%2C3'UTRs%2CPolII_occupancy_WT&highlight= JBrowse Viewer]
+
[https://jbrowse.yeastgenome.org/?loc=chrXIII%3A1..924431&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CDoube_strand_break_hotspots%2CXrn1-sensitive_unstable%20transcripts_XUTs%2CScGlycerolMedia%2C3'UTRs%2CPolII_occupancy_WT&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/seqTools?chr=13&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/seqTools?chr=13&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr13.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr13.fsa Download FASTA]
Line 161: Line 161:
 
| [[Commonly_used_strains#FY1679 | FY1679]], [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#FY1679 | FY1679]], [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
[https://browse.yeastgenome.org/?loc=chrXIV%3A1..784333&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CDoube_strand_break_hotspots%2CXrn1-sensitive_unstable%20transcripts_XUTs%2CScGlycerolMedia%2C3'UTRs%2CPolII_occupancy_WT&highlight= JBrowse Viewer]
+
[https://jbrowse.yeastgenome.org/?loc=chrXIV%3A1..784333&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CDoube_strand_break_hotspots%2CXrn1-sensitive_unstable%20transcripts_XUTs%2CScGlycerolMedia%2C3'UTRs%2CPolII_occupancy_WT&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/seqTools?chr=14&start=&end=&submit2=Submit+Form Gene/SequenceResources]
 
<br>[https://www.yeastgenome.org/seqTools?chr=14&start=&end=&submit2=Submit+Form Gene/SequenceResources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr14.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr14.fsa Download FASTA]
Line 171: Line 171:
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
|  
 
|  
−
[https://browse.yeastgenome.org/?loc=chrXV%3A1..1091291&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CDoube_strand_break_hotspots%2CXrn1-sensitive_unstable%20transcripts_XUTs%2CScGlycerolMedia%2C3'UTRs%2CPolII_occupancy_WT&highlight= JBrowse Viewer]
+
[https://jbrowse.yeastgenome.org/?loc=chrXV%3A1..1091291&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CDoube_strand_break_hotspots%2CXrn1-sensitive_unstable%20transcripts_XUTs%2CScGlycerolMedia%2C3'UTRs%2CPolII_occupancy_WT&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/seqTools?chr=15&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/seqTools?chr=15&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr15.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr15.fsa Download FASTA]
Line 186: Line 186:
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
[https://browse.yeastgenome.org/?loc=chrXVI%3A1..948066&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CDoube_strand_break_hotspots%2CXrn1-sensitive_unstable%20transcripts_XUTs%2CScGlycerolMedia%2C3'UTRs%2CPolII_occupancy_WT&highlight= JBrowse Viewer]
+
[https://jbrowse.yeastgenome.org/?loc=chrXVI%3A1..948066&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CDoube_strand_break_hotspots%2CXrn1-sensitive_unstable%20transcripts_XUTs%2CScGlycerolMedia%2C3'UTRs%2CPolII_occupancy_WT&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/seqTools?chr=16&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/seqTools?chr=16&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr16.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr16.fsa Download FASTA]
Line 196: Line 196:
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
|  
 
|  
−
[https://browse.yeastgenome.org/?loc=chrmt%3A1..85779&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CDoube_strand_break_hotspots%2CXrn1-sensitive_unstable%20transcripts_XUTs%2CScGlycerolMedia%2C3'UTRs%2CPolII_occupancy_WT&highlight= JBrowse Viewer]
+
[https://jbrowse.yeastgenome.org/?loc=chrmt%3A1..85779&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CDoube_strand_break_hotspots%2CXrn1-sensitive_unstable%20transcripts_XUTs%2CScGlycerolMedia%2C3'UTRs%2CPolII_occupancy_WT&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/seqTools?chr=17&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/seqTools?chr=17&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chrmt.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chrmt.fsa Download FASTA]
 
|-
 
|-

Latest revision as of 11:18, 11 April 2024

Saccharomyces cerevisiae chromosome statistics and retrieval options

Chromosome Region & Reference DNA Coordinator Total Length S288c sub-strain(s) Retrieve

I
SGD, PubMed, PDF

H. Bussey, Montreal, Canada 230,218 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

II
SGD, PubMed, PDF

H. Feldmann, Muenchen, Germany 813,184 genuine strain S288C

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

III
SGD, PubMed, PDF

S.G. Oliver, Manchester, England 316,620 XJ24-24a, AB972, A364A, DC5

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

IV
SGD, PubMed, PDF

Telo to Cen: C. Jacq, Paris, France
Cen to 960K: B. Barrell, Cambridge, England
960K to 1110K: M. Johnston, St. Louis, Missouri, USA
1110K to Telo: R. Davis, Stanford, California, USA

1,531,933 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

V
SGD, PubMed, PDF

R. Davis, Stanford, California, USA 576,874 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

VI
SGD, PubMed, PDF

Y. Murakami, Tokyo, Japan 270,161 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

VII
SGD, PubMed, PDF

H. Tettelin, Louvain-la-Neuve, Belgium 1,090,940 FY1679

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

VIII
SGD, PubMed, PDF

M. Johnston, St. Louis, Missouri, USA 562,643 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

IX
SGD, PubMed, PDF

B. Barrell, Cambridge, England 439,888 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

X
SGD, PubMed, PDF

F. Galibert, Rouen, France 745,751 FY1679

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

XI
SGD, PubMed, PDF

B. Dujon, Paris, France 666,816 FY1679

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

XII

SGD, PubMed, PDF

Left: J. Hoheisel, Heidelberg, Germany
Right: M. Johnston, St. Louis, Missouri, USA

1,078,177 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

XIII

SGD, PubMed, PDF

B. Barrell, Cambridge, England 924,431 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

XIV

SGD, PubMed, PDF

P. Philippsen, Basel, Switzerland 784,333 FY1679, AB972

JBrowse Viewer
Gene/SequenceResources
Download FASTA

XV

SGD, PubMed, PDF

B. Dujon, Paris, France 1,091,291 FY1679

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

XVI

SGD, PubMed, PDF

Left 1: A. Goffeau, Louvain-la-Neuve, Belgium
Left 2: H. Bussey, Montreal, Canada
Left 2a: R. Davis, Stanford, California, USA
Right 1: B. Barrell, Cambridge, England
Right 2: M. Johnston, St. Louis, Missouri, USA

948,066 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

Mitochondrial

SGD, PubMed, PDF

Foury, Francoise, Unite de Biochimie Physiologique 85,779 FY1679

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

Retrieved from "https://wiki.yeastgenome.org/index.php?title=Systematic_Sequencing_Table&oldid=406674"