Difference between revisions of "Details of 2021 Reference Genome Annotation Update R64.3"
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The ''S. cerevisiae'' strain S288C reference genome annotation was updated in its first major update since 2014. The new genome annotation is release R64.3.1, dated 2021-04-22. Note that the underlying genome sequence itself was not altered in any way. | The ''S. cerevisiae'' strain S288C reference genome annotation was updated in its first major update since 2014. The new genome annotation is release R64.3.1, dated 2021-04-22. Note that the underlying genome sequence itself was not altered in any way. | ||
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==R64.3 Annotation update summary== | ==R64.3 Annotation update summary== | ||
This annotation update included (details in table below): | This annotation update included (details in table below): | ||
Revision as of 15:34, 26 April 2021
The S. cerevisiae strain S288C reference genome annotation was updated in its first major update since 2014. The new genome annotation is release R64.3.1, dated 2021-04-22. Note that the underlying genome sequence itself was not altered in any way.
Contents
R64.3 Annotation update summary
This annotation update included (details in table below):
- 7 new ORFs: OTO1/YGR227C-A, YHR052C-B, YHR054C-B, YJR107C-A, YKL104W-A, YLR379W-A, YMR008C-A
- 5 new ncRNAs: GAL10-ncRNA, TBRT/XUT_2F-154, SUT169, PHO84 lncRNA, GAL4 lncRNA
- 2 new uORFs for ROK1/YGL171W
- 1 new recombination enhancer: RE
- 1 new LTR: YELWdelta27
- 3 ORFs with shifted translation starts: HPA3/YEL066W, YJR012C, LTO1/YNL260C
- 1 ORF with shifted translation stop plus new intron: LDO45/YMR147W
- Changed feature_type (and SO_term) for non-transcribed spacers: NTS1-2, NTS2-1, NTS2-2
- New systematic nomenclature system for entire annotated complement of ncRNAs
R64.3 Annotation update details
| Chr | Feature | Description of change | Reference |
|---|---|---|---|
| II | YNCB0008W aka GAL10-ncRNA | New ncRNA antisense to GAL10
|
Houseley et al 2008 PMID:19061643,
Pinskaya et al 2009 PMID:19407817,
|
| II | YNCB0014W aka TBRT/XUT_2F-154 | New ncRNA antisense to TAT1
|
Awasthi et al 2020 PMID:32081726 |
| III | RE/RE301 | New recombination enhancer
|
Wu and Haber 1996 PMID:8861911 |
| V | YELWdelta27 | New Ty1 LTR
|
Nene et al 2018 PMID:29320491 |
| V | HPA3/YEL066W | Moved translation start to Met19
|
Sampath et al 2013 PMID:23775086 |
| VII | OTO1/YGR227C-A | New ORF
|
Makanae et al 2015 PMID:25781884 |
| VII | ROK1/YGL171W | Two new uORFs
|
Jeon and Kim 2010 PMID:20969870 |
| VIII | YHR052C-B | New ORF
|
He et al 2018 PMID:29897761 |
| VIII | YHR054C-B | New ORF
|
He et al 2018 PMID:29897761 |
| VIII | SUT169/YNCH0011W | New ncRNA
|
Xu et al 2009 PMID:19169243,
Geisler et al 2012 PMID:22226051,
|
| X | YJR012C | Moved start to Met76
|
Sadhu et al 2018 PMID:29632376 |
| X | YJR107C-A | New ORF
|
Yagoub et al 2015 PMID:26554900, He et al 2018 PMID:29897761 |
| XI | YKL104W-A | New ORF
|
He et al 2018 PMID:29897761 |
| XII | YLR379W-A | New ORF
|
Internal reanalysis of results from Song et al 2015 to find and annotate missing S288C ORFs PMID:25781462 |
| XII | NTS1-2, NTS2-1, NTS2-2 | Change feature_type/SO_term from SO:0001637 rRNA_gene to SO:0000183 non_transcribed_region | |
| XIII | LDO45/YMR147W | Shift stop to be same as LDO16/YMR148W, add intron
|
Eisenberg-Bord et al 2018 PMID:29187527 |
| XIII | YMR008C-A | New ORF
|
Internal reanalysis of results from Song et al 2015 to find and annotate missing S288C ORFs PMID:25781462 |
| XIII | YNCM0001W aka PHO84 lncRNA | New ncRNA
|
Camblong et al 2007 PMID:18022365 |
| XIV | LTO1/YNL260C | Move start to Met37
|
Paul et al 2015 PMID:26182403 |
| XVI | YNCP0002W aka GAL4 lncRNA | New ncRNA
|
Geisler et al 2012 PMID:22226051 |
New systematic nomenclature system for noncoding RNA genes
| Chr | Systematic_name | Gene_name | Alias | Feature_type | Coordinates | Strand |
|---|---|---|---|---|---|---|
| I | YNCA0001W | HRA1 | ncRNA gene | 99305..99868 | + | |
| I | YNCA0002W | TRN1 | tP(UGG)A | tRNA gene | 139152..139254 | + |
| I | YNCA0003W | SNR18 | snR18 | snoRNA gene | 142367..142468 | + |
| I | YNCA0004W | TGA1 | tA(UGC)A | tRNA gene | 166267..166339 | + |
| I | YNCA0005W | SUP56 | tL(CAA)A | tRNA gene | 181141..181254 | + |
| I | YNCA0006C | tS(AGA)A | tRNA gene | 182522..182603 | - | |
| II | YNCB0001W | tL(UAA)B1 | tRNA gene | 9583..9666 | + | |
| II | YNCB0002W | tF(GAA)B | tRNA gene | 36398..36488 | + | |
| II | YNCB0003W | SNR56 | snR56 | snoRNA gene | 88190..88277 | + |
| II | YNCB0004W | tI(AAU)B | tRNA gene | 197494..197567 | + | |
| II | YNCB0005C | tG(GCC)B | tRNA gene | 197629..197699 | - | |
| II | YNCB0006W | tS(AGA)B | tRNA gene | 227075..227156 | + | |
| II | YNCB0007W | tT(AGU)B | tRNA gene | 266378..266450 | + | |
| II | YNCB0008W | GAL10-ncRNA | ncRNA gene | 276805..280645 | + | |
| II | YNCB0009C | SNR161 | snR161 | snoRNA gene | 307185..307345 | - |
| II | YNCB0010W | TLC1 | telomerase RNA gene | 307587..308887 | + | |
| II | YNCB0011C | tV(UAC)B | tRNA gene | 326792..326865 | - | |
| II | YNCB0012W | tL(UAA)B2 | tRNA gene | 347603..347686 | + | |
| II | YNCB0013W | tQ(UUG)B | tRNA gene | 350827..350898 | + | |
| II | YNCB0014W | TBRT | XUT_2F-154 | ncRNA gene | 376610..378633 | + |
| II | YNCB0015W | tR(UCU)B | tRNA gene | 405878..405949 | + | |
| II | YNCB0016W | tD(GUC)B | tRNA gene | 405960..406031 | + | |
| II | YNCB0017C | tC(GCA)B | tRNA gene | 643007..643078 | - | |
| II | YNCB0018W | tE(UUC)B | tRNA gene | 645167..645238 | + | |
| II | YNCB0019C | LSR1 | snRNA gene | 680688..681862 | - | |
| III | YNCC0001C | tE(UUC)C | tRNA gene | 82462..82533 | - | |
| III | YNCC0002W | SUP53 | tL(CAA)C | tRNA gene | 90859..90972 | + |
| III | YNCC0003C | SNR43 | snR43 | snoRNA gene | 107504..107712 | - |
| III | YNCC0004C | SUF2 | tP(AGG)C | tRNA gene | 123577..123648 | - |
| III | YNCC0005W | tN(GUU)C | tRNA gene | 127716..127789 | + | |
| III | YNCC0006C | SNR33 | snR33 | snoRNA gene | 142364..142546 | - |
| III | YNCC0007C | SUF16 | tG(GCC)C | tRNA gene | 142701..142771 | - |
| III | YNCC0008W | tM(CAU)C | tRNA gene | 149920..149991 | + | |
| III | YNCC0009C | tK(CUU)C | tRNA gene | 151284..151356 | - | |
| III | YNCC0010C | tQ(UUG)C | tRNA gene | 168301..168372 | - | |
| III | YNCC0011W | SNR65 | snR65 | snoRNA gene | 177183..177282 | + |
| III | YNCC0012C | SNR189 | snR189 | snoRNA gene | 178610..178798 | - |
| III | YNCC0013W | SUP61 | tS(CGA)C | tRNA gene | 227942..228042 | + |
| III | YNCC0014W | tT(AGU)C | tRNA gene | 295484..295556 | + | |
| IV | YNCD0001W | tG(GCC)D1 | tRNA gene | 83548..83618 | + | |
| IV | YNCD0002C | SNR63 | snR63 | snoRNA gene | 323217..323471 | - |
| IV | YNCD0003W | tK(UUU)D | tRNA gene | 359577..359672 | + | |
| IV | YNCD0004W | tA(AGC)D | tRNA gene | 410379..410451 | + | |
| IV | YNCD0005C | tT(AGU)D | tRNA gene | 434264..434336 | - | |
| IV | YNCD0006W | tS(AGA)D1 | tRNA gene | 437772..437853 | + | |
| IV | YNCD0007C | tV(UAC)D | tRNA gene | 488797..488870 | - | |
| IV | YNCD0008W | tL(UAA)D | tRNA gene | 519743..519826 | + | |
| IV | YNCD0009W | tQ(UUG)D1 | tRNA gene | 520972..521043 | + | |
| IV | YNCD0010C | SNR47 | snR47 | snoRNA gene | 541602..541700 | - |
| IV | YNCD0011W | tR(UCU)D | tRNA gene | 568882..568953 | + | |
| IV | YNCD0012W | tD(GUC)D | tRNA gene | 568964..569035 | + | |
| IV | YNCD0013C | tR(ACG)D | tRNA gene | 619969..620041 | - | |
| IV | YNCD0014C | tQ(UUG)D2 | tRNA gene | 645153..645224 | - | |
| IV | YNCD0015C | tI(AAU)D | tRNA gene | 668007..668080 | - | |
| IV | YNCD0016C | tQ(UUG)D3 | tRNA gene | 802731..802802 | - | |
| IV | YNCD0017W | tI(UAU)D | tRNA gene | 884361..884493 | + | |
| IV | YNCD0018W | SUP2 | tY(GUA)D | tRNA gene | 946312..946400 | + |
| IV | YNCD0019C | tS(AGA)D2 | tRNA gene | 980974..981055 | - | |
| IV | YNCD0020W | tG(GCC)D2 | tRNA gene | 992832..992902 | + | |
| IV | YNCD0021C | tE(CUC)D | tRNA gene | 1017207..1017278 | - | |
| IV | YNCD0022C | tV(CAC)D | tRNA gene | 1075472..1075544 | - | |
| IV | YNCD0023C | tF(GAA)D | tRNA gene | 1095370..1095461 | - | |
| IV | YNCD0024C | tX(XXX)D | tRNA gene | 1150842..1150941 | - | |
| IV | YNCD0025W | EMT1 | tM(CAU)D | tRNA gene | 1175829..1175901 | + |
| IV | YNCD0026W | tK(CUU)D1 | tRNA gene | 1201750..1201822 | + | |
| IV | YNCD0027C | SUF3 | tG(CCC)D | tRNA gene | 1257008..1257079 | - |
| IV | YNCD0028W | tS(AGA)D3 | tRNA gene | 1305630..1305712 | + | |
| IV | YNCD0029C | tK(CUU)D2 | tRNA gene | 1352466..1352538 | - | |
| IV | YNCD0030W | SNR13 | snR13 | snoRNA gene | 1402919..1403042 | + |
| IV | YNCD0031C | tL(CAA)D | tRNA gene | 1461715..1461829 | - | |
| IV | YNCD0032C | SNR84 | snR84 | snoRNA gene | 1492477..1493026 | - |
| V | YNCE0001C | SNR80 | snR80 | snoRNA gene | 52150..52320 | - |
| V | YNCE0002W | SNR67 | snR67 | snoRNA gene | 61352..61433 | + |
| V | YNCE0003W | SNR53 | snR53 | snoRNA gene | 61699..61789 | + |
| V | YNCE0004C | tG(GCC)E | tRNA gene | 61890..61960 | - | |
| V | YNCE0005W | tS(AGA)E | tRNA gene | 86604..86685 | + | |
| V | YNCE0006W | IMT4 | tM(CAU)E | tRNA gene | 100133..100204 | + |
| V | YNCE0007C | RPR1 | ncRNA gene | 117667..118035 | - | |
| V | YNCE0008C | tQ(UUG)E2 | tRNA gene | 131082..131153 | - | |
| V | YNCE0009C | tK(CUU)E1 | tRNA gene | 135425..135497 | - | |
| V | YNCE0010W | tR(UCU)E | tRNA gene | 138666..138737 | + | |
| V | YNCE0011C | SNR14 | snR14 | snRNA gene | 167427..167586 | - |
| V | YNCE0012W | tE(UUC)E1 | tRNA gene | 177099..177170 | + | |
| V | YNCE0013W | tH(GUG)E1 | tRNA gene | 207357..207428 | + | |
| V | YNCE0014W | tQ(UUG)E1 | tRNA gene | 250286..250357 | + | |
| V | YNCE0015C | SUP19 | tS(UGA)E | tRNA gene | 288443..288524 | - |
| V | YNCE0016C | tA(UGC)E | tRNA gene | 312023..312095 | - | |
| V | YNCE0017W | SRG1 | ncRNA gene | 322212..322762 | + | |
| V | YNCE0018W | tE(UUC)E2 | tRNA gene | 354934..355005 | + | |
| V | YNCE0019W | SNR4 | snR4 | snoRNA gene | 424698..424883 | + |
| V | YNCE0020C | SNR52 | snR52 | snoRNA gene | 431129..431220 | - |
| V | YNCE0021C | tH(GUG)E2 | tRNA gene | 434541..434612 | - | |
| V | YNCE0022C | tK(CUU)E2 | tRNA gene | 435752..435824 | - | |
| V | YNCE0023W | tV(AAC)E1 | tRNA gene | 438700..438773 | + | |
| V | YNCE0024W | SCR1 | ncRNA gene | 441987..442508 | + | |
| V | YNCE0025C | tI(AAU)E1 | tRNA gene | 443202..443275 | - | |
| V | YNCE0026W | tV(AAC)E2 | tRNA gene | 469457..469530 | + | |
| V | YNCE0027C | tE(UUC)E3 | tRNA gene | 487331..487402 | - | |
| V | YNCE0028C | tR(ACG)E | tRNA gene | 492352..492424 | - | |
| V | YNCE0029C | tI(AAU)E2 | tRNA gene | 551285..551358 | - | |
| VI | YNCF0001C | RUF21 | ncRNA gene | 57815..58521 | - | |
| VI | YNCF0002W | SUF9 | tP(UGG)F | tRNA gene | 101376..101478 | + |
| VI | YNCF0003C | RUF20 | ncRNA gene | 131061..131503 | - | |
| VI | YNCF0004C | tN(GUU)F | tRNA gene | 137486..137559 | - | |
| VI | YNCF0005C | tF(GAA)F | tRNA gene | 157916..158007 | - | |
| VI | YNCF0006W | SUF20 | tG(GCC)F1 | tRNA gene | 162228..162298 | + |
| VI | YNCF0007W | SUP11 | tY(GUA)F1 | tRNA gene | 167437..167525 | + |
| VI | YNCF0008C | tG(GCC)F2 | tRNA gene | 180974..181044 | - | |
| VI | YNCF0009C | tS(GCU)F | tRNA gene | 191513..191613 | - | |
| VI | YNCF0010C | RUF22 | ncRNA gene | 199299..199813 | - | |
| VI | YNCF0011C | tA(AGC)F | tRNA gene | 204924..204996 | - | |
| VI | YNCF0012C | SUP6 | tY(GUA)F2 | tRNA gene | 210619..210707 | - |
| VI | YNCF0013W | RUF23 | ncRNA gene | 221714..221967 | + | |
| VI | YNCF0014C | tK(CUU)F | tRNA gene | 226688..226760 | - | |
| VII | YNCG0001C | RME3 | ncRNA gene | 33109..35013 | - | |
| VII | YNCG0002C | tV(AAC)G3 | tRNA gene | 73829..73902 | - | |
| VII | YNCG0003C | tH(GUG)G1 | tRNA gene | 110625..110696 | - | |
| VII | YNCG0004W | tK(UUU)G1 | tRNA gene | 115488..115583 | + | |
| VII | YNCG0005W | tK(CUU)G1 | tRNA gene | 122269..122341 | + | |
| VII | YNCG0006C | RME2 | ncRNA gene | 141898..144120 | - | |
| VII | YNCG0007C | tK(CUU)G2 | tRNA gene | 185714..185786 | - | |
| VII | YNCG0008W | tL(CAA)G1 | tRNA gene | 205521..205634 | + | |
| VII | YNCG0009C | tW(CCA)G1 | tRNA gene | 287350..287455 | - | |
| VII | YNCG0010W | SNR82 | snR82 | snoRNA gene | 316788..317055 | + |
| VII | YNCG0011W | tH(GUG)G2 | tRNA gene | 319781..319852 | + | |
| VII | YNCG0012W | SOE1 | tE(UUC)G1 | tRNA gene | 328583..328654 | + |
| VII | YNCG0013W | SNR10 | snR10 | snoRNA gene | 345986..346230 | + |
| VII | YNCG0014C | SNR39 | snR39 | snoRNA gene | 365163..365251 | - |
| VII | YNCG0015C | SNR39B | snR39B | snoRNA gene | 366374..366469 | - |
| VII | YNCG0016C | tE(UUC)G2 | tRNA gene | 401527..401598 | - | |
| VII | YNCG0017W | tR(UCU)G1 | tRNA gene | 405470..405541 | + | |
| VII | YNCG0018C | tV(AAC)G1 | tRNA gene | 412294..412367 | - | |
| VII | YNCG0019W | SUP54 | tL(CAA)G2 | tRNA gene | 423092..423205 | + |
| VII | YNCG0020C | tF(GAA)G | tRNA gene | 440716..440807 | - | |
| VII | YNCG0021W | tD(GUC)G1 | tRNA gene | 531610..531681 | + | |
| VII | YNCG0022W | tE(UUC)G3 | tRNA gene | 541850..541921 | + | |
| VII | YNCG0023C | tD(GUC)G2 | tRNA gene | 544577..544648 | - | |
| VII | YNCG0024W | SNR46 | snR46 | snoRNA gene | 545370..545566 | + |
| VII | YNCG0025C | tS(AGA)G | tRNA gene | 561662..561743 | - | |
| VII | YNCG0026W | SNR48 | snR48 | snoRNA gene | 609584..609696 | + |
| VII | YNCG0027W | tT(UGU)G1 | tRNA gene | 661749..661820 | + | |
| VII | YNCG0028W | tL(GAG)G | tRNA gene | 700675..700756 | + | |
| VII | YNCG0029C | tK(UUU)G2 | tRNA gene | 700953..701048 | - | |
| VII | YNCG0030C | tC(GCA)G | tRNA gene | 707108..707179 | - | |
| VII | YNCG0031W | tN(GUU)G | tRNA gene | 731137..731210 | + | |
| VII | YNCG0032W | tR(UCU)G3 | tRNA gene | 736340..736411 | + | |
| VII | YNCG0033W | tI(AAU)G | tRNA gene | 739122..739195 | + | |
| VII | YNCG0034W | tA(AGC)G | tRNA gene | 774349..774421 | + | |
| VII | YNCG0035W | SUF4 | tG(UCC)G | tRNA gene | 779616..779687 | + |
| VII | YNCG0036W | tA(UGC)G | tRNA gene | 794417..794489 | + | |
| VII | YNCG0037W | tV(AAC)G2 | tRNA gene | 823482..823555 | + | |
| VII | YNCG0038C | tR(UCU)G2 | tRNA gene | 828723..828794 | - | |
| VII | YNCG0039W | tG(GCC)G1 | tRNA gene | 845649..845719 | + | |
| VII | YNCG0040C | tL(CAA)G3 | tRNA gene | 857378..857491 | - | |
| VII | YNCG0041W | tK(CUU)G3 | tRNA gene | 876394..876466 | + | |
| VII | YNCG0042C | tW(CCA)G2 | tRNA gene | 878710..878815 | - | |
| VII | YNCG0043C | tG(GCC)G2 | tRNA gene | 930953..931023 | - | |
| VII | YNCG0044C | SNR7-L | snR7-L | snRNA gene | 939459..939672 | - |
| VII | YNCG0045C | SNR7-S | snR7-S | snRNA gene | 939494..939672 | - |
| VII | YNCG0046W | tT(UGU)G2 | tRNA gene | 1004216..1004287 | + | |
| VIII | YNCH0001W | tH(GUG)H | tRNA gene | 62755..62826 | + | |
| VIII | YNCH0002C | tV(AAC)H | tRNA gene | 85298..85371 | - | |
| VIII | YNCH0003C | tT(AGU)H | tRNA gene | 116107..116179 | - | |
| VIII | YNCH0004C | tS(AGA)H | tRNA gene | 133026..133107 | - | |
| VIII | YNCH0005W | tQ(UUG)H | tRNA gene | 134321..134392 | + | |
| VIII | YNCH0006C | tA(AGC)H | tRNA gene | 146242..146314 | - | |
| VIII | YNCH0007W | RUF5-1 | ncRNA gene | 212409..213118 | + | |
| VIII | YNCH0008W | RUF5-2 | ncRNA gene | 214407..215116 | + | |
| VIII | YNCH0009C | tF(GAA)H1 | tRNA gene | 237848..237939 | - | |
| VIII | YNCH0010C | tF(GAA)H2 | tRNA gene | 358478..358569 | - | |
| VIII | YNCH0011W | SUT169 | ncRNA gene | 378254..379237 | + | |
| VIII | YNCH0012W | SNR32 | snR32 | snoRNA gene | 381540..381727 | + |
| VIII | YNCH0013C | SUF8 | tP(UGG)H | tRNA gene | 388893..388995 | - |
| VIII | YNCH0014W | SNR71 | snR71 | snoRNA gene | 411228..411317 | + |
| VIII | YNCH0015W | tT(UGU)H | tRNA gene | 466990..467061 | + | |
| VIII | YNCH0016C | tV(CAC)H | tRNA gene | 475706..475778 | - | |
| IX | YNCI0001W | SNR68 | snR68 | snoRNA gene | 97111..97246 | + |
| IX | YNCI0002W | tT(AGU)I1 | tRNA gene | 175031..175103 | + | |
| IX | YNCI0003C | tI(AAU)I1 | tRNA gene | 183440..183513 | - | |
| IX | YNCI0004W | tE(CUC)I | tRNA gene | 197592..197663 | + | |
| IX | YNCI0005W | tI(AAU)I2 | tRNA gene | 210665..210738 | + | |
| IX | YNCI0006W | SUP17 | tS(UGA)I | tRNA gene | 248850..248931 | + |
| IX | YNCI0007C | tK(CUU)I | tRNA gene | 300228..300300 | - | |
| IX | YNCI0008C | tD(GUC)I1 | tRNA gene | 324303..324374 | - | |
| IX | YNCI0009W | tT(AGU)I2 | tRNA gene | 325748..325820 | + | |
| IX | YNCI0010C | tD(GUC)I2 | tRNA gene | 336349..336420 | - | |
| IX | YNCI0011W | tE(UUC)I | tRNA gene | 370417..370488 | + | |
| IX | YNCI0012 | ICR1 | ncRNA gene | 393884..397082 | - | |
| IX | YNCI0013W | PWR1 | ncRNA gene | 395999..396939 | + | |
| X | YNCJ0001C | tT(AGU)J | tRNA gene | 59100..59172 | - | |
| X | YNCJ0002C | tE(UUC)J | tRNA gene | 115939..116010 | - | |
| X | YNCJ0003C | SNR128 | snR128 | snoRNA gene | 139566..139691 | - |
| X | YNCJ0004C | SNR190 | snR190 | snoRNA gene | 139761..139950 | - |
| X | YNCJ0005C | tA(AGC)J | tRNA gene | 197313..197385 | - | |
| X | YNCJ0006W | tD(GUC)J1 | tRNA gene | 204735..204806 | + | |
| X | YNCJ0007C | SNR37 | snR37 | snoRNA gene | 228094..228479 | - |
| X | YNCJ0008W | tR(ACG)J | tRNA gene | 233939..234011 | + | |
| X | YNCJ0009C | SNR60 | snR60 | snoRNA gene | 349130..349233 | - |
| X | YNCJ0010W | SUP7 | tY(GUA)J1 | tRNA gene | 354244..354332 | + |
| X | YNCJ0011W | tR(UCU)J1 | tRNA gene | 355374..355445 | + | |
| X | YNCJ0012W | tD(GUC)J2 | tRNA gene | 355456..355527 | + | |
| X | YNCJ0013C | tD(GUC)J3 | tRNA gene | 374424..374495 | - | |
| X | YNCJ0014C | tR(UCU)J2 | tRNA gene | 374506..374577 | - | |
| X | YNCJ0015W | tV(AAC)J | tRNA gene | 378360..378433 | + | |
| X | YNCJ0016C | EMT5 | tM(CAU)J1 | tRNA gene | 391043..391115 | - |
| X | YNCJ0017C | tG(GCC)J1 | tRNA gene | 396726..396796 | - | |
| X | YNCJ0018W | tK(CUU)J | tRNA gene | 414966..415038 | + | |
| X | YNCJ0019C | tW(CCA)J | tRNA gene | 415931..416036 | - | |
| X | YNCJ0020W | EMT3 | tM(CAU)J2 | tRNA gene | 422937..423009 | + |
| X | YNCJ0021C | SUP51 | tL(UAA)J | tRNA gene | 424432..424515 | - |
| X | YNCJ0022C | IMT3 | tM(CAU)J3 | tRNA gene | 517813..517884 | - |
| X | YNCJ0023C | tS(AGA)J | tRNA gene | 524012..524093 | - | |
| X | YNCJ0024W | SUF23 | tG(GCC)J2 | tRNA gene | 531828..531898 | + |
| X | YNCJ0025W | HSX1 | tR(CCU)J | tRNA gene | 538555..538626 | + |
| X | YNCJ0026W | tD(GUC)J4 | tRNA gene | 541508..541579 | + | |
| X | YNCJ0027C | SUP4 | tY(GUA)J2 | tRNA gene | 542956..543044 | - |
| X | YNCJ0028C | IRT1 | ncRNA gene | 605936..607424 | - | |
| X | YNCJ0029W | tL(UAG)J | tRNA gene | 617919..618019 | + | |
| X | YNCJ0030W | SNR3 | snR3 | snoRNA gene | 663749..663942 | + |
| XI | YNCK0001W | SNR64 | snR64 | snoRNA gene | 38811..38911 | + |
| XI | YNCK0002C | TRT2 | tT(CGU)K | tRNA gene | 46735..46806 | - |
| XI | YNCK0003W | tN(GUU)K | tRNA gene | 74624..74697 | + | |
| XI | YNCK0004W | tL(UAA)K | tRNA gene | 84208..84291 | + | |
| XI | YNCK0005C | tE(UUC)K | tRNA gene | 141018..141089 | - | |
| XI | YNCK0006C | tR(UCU)K | tRNA gene | 162487..162558 | - | |
| XI | YNCK0007W | tK(CUU)K | tRNA gene | 202999..203071 | + | |
| XI | YNCK0008W | tA(AGC)K1 | tRNA gene | 219895..219967 | + | |
| XI | YNCK0009W | SNR38 | snR38 | snoRNA gene | 283185..283279 | + |
| XI | YNCK0010W | tW(CCA)K | tRNA gene | 302918..303023 | + | |
| XI | YNCK0011C | tV(AAC)K1 | tRNA gene | 308144..308217 | - | |
| XI | YNCK0012C | tH(GUG)K | tRNA gene | 313401..313472 | - | |
| XI | YNCK0013W | SNR69 | snR69 | snoRNA gene | 364776..364876 | + |
| XI | YNCK0014W | tV(AAC)K2 | tRNA gene | 379680..379753 | + | |
| XI | YNCK0015C | SNR87 | snR87 | snoRNA gene | 431030..431138 | - |
| XI | YNCK0016W | tL(CAA)K | tRNA gene | 458557..458670 | + | |
| XI | YNCK0017W | tR(ACG)K | tRNA gene | 490968..491040 | + | |
| XI | YNCK0018C | tD(GUC)K | tRNA gene | 513332..513403 | - | |
| XI | YNCK0019W | tA(AGC)K2 | tRNA gene | 517988..518060 | + | |
| XI | YNCK0020C | SNR42 | snR42 | snoRNA gene | 559016..559366 | - |
| XI | YNCK0021W | tK(UUU)K | tRNA gene | 578965..579060 | + | |
| XII | YNCL0001W | tP(UGG)L | tRNA gene | 92548..92650 | + | |
| XII | YNCL0002C | tS(AGA)L | tRNA gene | 167944..168025 | - | |
| XII | YNCL0003W | SNR30 | snR30 | snoRNA gene | 198784..199389 | + |
| XII | YNCL0004C | tA(UGC)L | tRNA gene | 214883..214955 | - | |
| XII | YNCL0005C | SNR79 | snR79 | snoRNA gene | 348427..348510 | - |
| XII | YNCL0006W | SNR6 | snR6 | snRNA gene | 366235..366346 | + |
| XII | YNCL0007W | tR(ACG)L | tRNA gene | 374355..374427 | + | |
| XII | YNCL0008W | tD(GUC)L1 | tRNA gene | 427132..427203 | + | |
| XII | YNCL0009C | tQ(UUG)L | tRNA gene | 448650..448721 | - | |
| XII | YNCL0010C | RDN37-1 | rRNA gene | 451575..458432 | - | |
| XII | YNCL0011C | ETS2-1 | rRNA gene | 451575..451785 | - | |
| XII | YNCL0012C | RDN25-1 | rRNA gene | 451786..455181 | - | |
| XII | YNCL0013C | ITS2-1 | rRNA gene | 455182..455413 | - | |
| XII | YNCL0014C | RDN58-1 | rRNA gene | 455414..455571 | - | |
| XII | YNCL0015C | ITS1-1 | rRNA gene | 455572..455932 | - | |
| XII | YNCL0016C | RDN18-1 | rRNA gene | 455933..457732 | - | |
| XII | YNCL0017C | ETS1-1 | rRNA gene | 457733..458432 | - | |
| XII | YNCL0018W | RDN5-1 | rRNA gene | 459676..459796 | + | |
| XII | YNCL0019C | ETS2-2 | rRNA gene | 460712..460922 | - | |
| XII | YNCL0020C | RDN37-2 | rRNA gene | 460712..467569 | - | |
| XII | YNCL0021C | RDN25-2 | rRNA gene | 460923..464318 | - | |
| XII | YNCL0022C | ITS2-2 | rRNA gene | 464319..464550 | - | |
| XII | YNCL0023C | RDN58-2 | rRNA gene | 464551..464708 | - | |
| XII | YNCL0024C | ITS1-2 | rRNA gene | 464709..465069 | - | |
| XII | YNCL0025C | RDN18-2 | rRNA gene | 465070..466869 | - | |
| XII | YNCL0026C | ETS1-2 | rRNA gene | 466870..467569 | - | |
| XII | YNCL0027W | RDN5-2 | rRNA gene | 468813..468931 | + | |
| XII | YNCL0028W | RDN5-3 | rRNA gene | 472465..472583 | + | |
| XII | YNCL0029W | RDN5-4 | rRNA gene | 482045..482163 | + | |
| XII | YNCL0030W | RDN5-5 | rRNA gene | 485697..485815 | + | |
| XII | YNCL0031W | RDN5-6 | rRNA gene | 489349..489469 | + | |
| XII | YNCL0032C | tL(UAG)L1 | tRNA gene | 592519..592619 | - | |
| XII | YNCL0033C | tI(UAU)L | tRNA gene | 605300..605432 | - | |
| XII | YNCL0034W | tL(CAA)L | tRNA gene | 628383..628497 | + | |
| XII | YNCL0035C | tA(AGC)L | tRNA gene | 656934..657006 | - | |
| XII | YNCL0036C | tV(AAC)L | tRNA gene | 687859..687932 | - | |
| XII | YNCL0037W | tL(UAG)L2 | tRNA gene | 732090..732190 | + | |
| XII | YNCL0038W | tI(AAU)L1 | tRNA gene | 734802..734875 | + | |
| XII | YNCL0039W | tX(XXX)L | tRNA gene | 784354..784453 | + | |
| XII | YNCL0040W | tD(GUC)L2 | tRNA gene | 793918..793989 | + | |
| XII | YNCL0041C | SNR61 | snR61 | snoRNA gene | 794486..794575 | - |
| XII | YNCL0042C | SNR55 | snR55 | snoRNA gene | 794697..794794 | - |
| XII | YNCL0043C | SNR57 | snR57 | snoRNA gene | 794937..795024 | - |
| XII | YNCL0044W | tE(UUC)L | tRNA gene | 797178..797249 | + | |
| XII | YNCL0045W | TRR4 | tR(CCG)L | tRNA gene | 818609..818680 | + |
| XII | YNCL0046W | SNR44 | snR44 | snoRNA gene | 856710..856920 | + |
| XII | YNCL0047W | tK(UUU)L | tRNA gene | 875376..875471 | + | |
| XII | YNCL0048W | SNR34 | snR34 | snoRNA gene | 899180..899382 | + |
| XII | YNCL0049C | tL(UAA)L | tRNA gene | 962972..963055 | - | |
| XII | YNCL0050C | tN(GUU)L | tRNA gene | 975983..976056 | - | |
| XII | YNCL0051C | tI(AAU)L2 | tRNA gene | 1052071..1052144 | - | |
| XIII | YNCM0001W | PHO84 lncRNA | ncRNA gene | 23564..26578 | + | |
| XIII | YNCM0002C | SNR85 | snR85 | snoRNA gene | 67768..67938 | - |
| XIII | YNCM0003W | ZOD1 | ncRNA gene | 91970..92027 | + | |
| XIII | YNCM0004C | tR(UCU)M2 | tRNA gene | 131825..131896 | - | |
| XIII | YNCM0005C | SNR54 | snR54 | snoRNA gene | 163535..163620 | - |
| XIII | YNCM0006W | SUP5 | tY(GUA)M1 | tRNA gene | 168795..168883 | + |
| XIII | YNCM0007C | tG(GCC)M | tRNA gene | 183898..183968 | - | |
| XIII | YNCM0008C | SUF7 | tP(UGG)M | tRNA gene | 196068..196170 | - |
| XIII | YNCM0009C | tS(AGA)M | tRNA gene | 259158..259239 | - | |
| XIII | YNCM0010W | tE(UUC)M | tRNA gene | 290801..290872 | + | |
| XIII | YNCM0011W | SNR78 | snR78 | snoRNA gene | 297278..297364 | + |
| XIII | YNCM0012W | SNR77 | snR77 | snoRNA gene | 297506..297593 | + |
| XIII | YNCM0013W | SNR76 | snR76 | snoRNA gene | 297725..297833 | + |
| XIII | YNCM0014W | SNR75 | snR75 | snoRNA gene | 297918..298006 | + |
| XIII | YNCM0015W | SNR74 | snR74 | snoRNA gene | 298138..298225 | + |
| XIII | YNCM0016W | SNR73 | snR73 | snoRNA gene | 298307..298412 | + |
| XIII | YNCM0017W | SNR72 | snR72 | snoRNA gene | 298554..298651 | + |
| XIII | YNCM0018C | tA(AGC)M1 | tRNA gene | 321147..321219 | - | |
| XIII | YNCM0019W | tF(GAA)M | tRNA gene | 352280..352370 | + | |
| XIII | YNCM0020W | tH(GUG)M | tRNA gene | 363064..363135 | + | |
| XIII | YNCM0021C | tV(AAC)M1 | tRNA gene | 372445..372518 | - | |
| XIII | YNCM0022C | tW(CCA)M | tRNA gene | 379303..379408 | - | |
| XIII | YNCM0023C | tV(AAC)M2 | tRNA gene | 420588..420661 | - | |
| XIII | YNCM0024W | tD(GUC)M | tRNA gene | 463554..463625 | + | |
| XIII | YNCM0025C | tK(CUU)M | tRNA gene | 480621..480693 | - | |
| XIII | YNCM0026C | SNR24 | snR24 | snoRNA gene | 499984..500072 | - |
| XIII | YNCM0027W | tL(CAA)M | tRNA gene | 504895..505008 | + | |
| XIII | YNCM0028C | EMT4 | tM(CAU)M | tRNA gene | 572883..572955 | - |
| XIII | YNCM0029C | tV(AAC)M3 | tRNA gene | 586636..586709 | - | |
| XIII | YNCM0030W | SNR83 | snR83 | snoRNA gene | 626349..626654 | + |
| XIII | YNCM0031W | SNR11 | snR11 | snoRNA gene | 652275..652532 | + |
| XIII | YNCM0032C | RNA170 | ncRNA gene | 667288..667456 | - | |
| XIII | YNCM0033C | tR(UCU)M1 | tRNA gene | 747892..747963 | - | |
| XIII | YNCM0034C | SNR86 | snR86 | snoRNA gene | 762110..763113 | - |
| XIII | YNCM0035C | tA(AGC)M2 | tRNA gene | 768369..768441 | - | |
| XIII | YNCM0036C | CDC65 | tQ(CUG)M | tRNA gene | 808246..808317 | - |
| XIII | YNCM0037W | SUP8 | tY(GUA)M2 | tRNA gene | 837928..838016 | + |
| XIV | YNCN0001W | SNR40 | snR40 | snoRNA gene | 89210..89306 | + |
| XIV | YNCN0002C | SUF6 | tG(UCC)N | tRNA gene | 96241..96312 | - |
| XIV | YNCN0003W | tN(GUU)N1 | tRNA gene | 102716..102789 | + | |
| XIV | YNCN0004W | tT(AGU)N1 | tRNA gene | 104805..104877 | + | |
| XIV | YNCN0005C | SNR19 | snR19 | snRNA gene | 230105..230672 | - |
| XIV | YNCN0006W | tF(GAA)N | tRNA gene | 374869..374959 | + | |
| XIV | YNCN0007W | tL(CAA)N | tRNA gene | 443006..443119 | + | |
| XIV | YNCN0008C | tD(GUC)N | tRNA gene | 519099..519169 | - | |
| XIV | YNCN0009W | tP(UGG)N1 | tRNA gene | 547094..547196 | + | |
| XIV | YNCN0010C | tT(AGU)N2 | tRNA gene | 560693..560765 | - | |
| XIV | YNCN0011W | tP(UGG)N2 | tRNA gene | 568115..568217 | + | |
| XIV | YNCN0012C | tI(AAU)N1 | tRNA gene | 569867..569940 | - | |
| XIV | YNCN0013W | NME1 | snoRNA gene | 585587..585926 | + | |
| XIV | YNCN0014W | SNR66 | snR66 | snoRNA gene | 586090..586175 | + |
| XIV | YNCN0015W | tI(AAU)N2 | tRNA gene | 602312..602385 | + | |
| XIV | YNCN0016C | SUF10 | tP(AGG)N | tRNA gene | 631846..631917 | - |
| XIV | YNCN0017W | tN(GUU)N2 | tRNA gene | 632599..632672 | + | |
| XIV | YNCN0018W | SNR49 | snR49 | snoRNA gene | 716120..716284 | + |
| XIV | YNCN0019C | SNR191 | snR191 | snoRNA gene | 721938..722211 | - |
| XIV | YNCN0020C | tL(UAA)N | tRNA gene | 726134..726217 | - | |
| XV | YNCO0001C | SUF1 | tG(UCC)O | tRNA gene | 110962..111033 | - |
| XV | YNCO0002W | tT(AGU)O1 | tRNA gene | 113802..113874 | + | |
| XV | YNCO0003C | SNR58 | snR58 | snoRNA gene | 136088..136183 | - |
| XV | YNCO0004C | tG(GCC)O1 | tRNA gene | 226611..226681 | - | |
| XV | YNCO0005W | tN(GUU)O1 | tRNA gene | 228331..228404 | + | |
| XV | YNCO0006W | SNR81 | snR81 | snoRNA gene | 234346..234546 | + |
| XV | YNCO0007W | SNR50 | snR50 | snoRNA gene | 259489..259578 | + |
| XV | YNCO0008W | tS(GCU)O | tRNA gene | 274673..274773 | + | |
| XV | YNCO0009W | SUF17 | tG(GCC)O2 | tRNA gene | 282164..282234 | + |
| XV | YNCO0010W | SUP3 | tY(GUA)O | tRNA gene | 288192..288280 | + |
| XV | YNCO0011W | tP(UGG)O1 | tRNA gene | 301097..301198 | + | |
| XV | YNCO0012C | tR(ACG)O | tRNA gene | 340299..340371 | - | |
| XV | YNCO0013C | tT(AGU)O2 | tRNA gene | 354041..354113 | - | |
| XV | YNCO0014C | SNR9 | snR9 | snoRNA gene | 407948..408134 | - |
| XV | YNCO0015C | SNR62 | snR62 | snoRNA gene | 409765..409864 | - |
| XV | YNCO0016W | tK(UUU)O | tRNA gene | 438643..438738 | + | |
| XV | YNCO0017W | SUF11 | tP(UGG)O2 | tRNA gene | 464450..464551 | + |
| XV | YNCO0018W | tN(GUU)O2 | tRNA gene | 487439..487512 | + | |
| XV | YNCO0019W | tD(GUC)O | tRNA gene | 571958..572029 | + | |
| XV | YNCO0020C | SUF5 | tG(CCC)O | tRNA gene | 594354..594425 | - |
| XV | YNCO0021C | tV(AAC)O | tRNA gene | 663812..663885 | - | |
| XV | YNCO0022C | SNR36 | snR36 | snoRNA gene | 680685..680866 | - |
| XV | YNCO0023W | IMT1 | tM(CAU)O1 | tRNA gene | 710201..710272 | + |
| XV | YNCO0024C | SNR35 | snR35 | snoRNA gene | 759326..759529 | - |
| XV | YNCO0025W | SNR17A | snR17a | snoRNA gene | 780107..780596 | + |
| XV | YNCO0026W | SNR8 | snR8 | snoRNA gene | 832332..832521 | + |
| XV | YNCO0027C | SNR31 | snR31 | snoRNA gene | 841958..842182 | - |
| XV | YNCO0028W | SNR5 | snR5 | snoRNA gene | 842403..842606 | + |
| XV | YNCO0029C | tA(UGC)O | tRNA gene | 854187..854259 | - | |
| XV | YNCO0030W | EMT2 | tM(CAU)O2 | tRNA gene | 976421..976493 | + |
| XVI | YNCP0001C | tW(CCA)P | tRNA gene | 56169..56274 | - | |
| XVI | YNCP0002W | GAL4 lncRNA | ncRNA gene | 79562..82648 | + | |
| XVI | YNCP0003W | SNR59 | snR59 | snoRNA gene | 173827..173904 | + |
| XVI | YNCP0004C | tE(UUC)P | tRNA gene | 210192..210263 | - | |
| XVI | YNCP0005C | SNR17B | snR17b | snoRNA gene | 281056..281517 | - |
| XVI | YNCP0006C | IMT2 | tM(CAU)P | tRNA gene | 338848..338919 | - |
| XVI | YNCP0007C | tC(GCA)P1 | tRNA gene | 435893..435964 | - | |
| XVI | YNCP0008C | tF(GAA)P1 | tRNA gene | 560198..560289 | - | |
| XVI | YNCP0009W | tG(GCC)P1 | tRNA gene | 572269..572339 | + | |
| XVI | YNCP0010W | tK(CUU)P | tRNA gene | 582062..582134 | + | |
| XVI | YNCP0011C | tF(GAA)P2 | tRNA gene | 622540..622631 | - | |
| XVI | YNCP0012W | SUP16 | tS(UGA)P | tRNA gene | 689565..689646 | + |
| XVI | YNCP0013C | SNR51 | snR51 | snoRNA gene | 718700..718806 | - |
| XVI | YNCP0014C | SNR70 | snR70 | snoRNA gene | 718887..719050 | - |
| XVI | YNCP0015C | SNR41 | snR41 | snoRNA gene | 719148..719242 | - |
| XVI | YNCP0016W | tT(UGU)P | tRNA gene | 744284..744355 | + | |
| XVI | YNCP0017C | tK(UUU)P | tRNA gene | 769207..769302 | - | |
| XVI | YNCP0018C | tC(GCA)P2 | tRNA gene | 775765..775836 | - | |
| XVI | YNCP0019W | tN(GUU)P | tRNA gene | 810676..810749 | + | |
| XVI | YNCP0020W | tI(AAU)P1 | tRNA gene | 819529..819602 | + | |
| XVI | YNCP0021W | SNR45 | snR45 | snoRNA gene | 821732..821903 | + |
| XVI | YNCP0022W | tA(AGC)P | tRNA gene | 856902..856974 | + | |
| XVI | YNCP0023W | tG(GCC)P2 | tRNA gene | 860379..860449 | + | |
| XVI | YNCP0024C | tI(AAU)P2 | tRNA gene | 880296..880369 | - | |
| Mito | YNCQ0001W | tP(UGG)Q | tRNA gene | 731..802 | + | |
| Mito | YNCQ0002W | 15S_RRNA | Q0020 | rRNA gene | 6546..8194 | + |
| Mito | YNCQ0003W | tW(UCA)Q | tRNA gene | 9374..9447 | + | |
| Mito | YNCQ0004W | tE(UUC)Q | tRNA gene | 35373..35444 | + | |
| Mito | YNCQ0005W | tS(UGA)Q2 | tRNA gene | 48201..48290 | + | |
| Mito | YNCQ0006W | 21S_RRNA | Q0158 | rRNA gene | 58009..62447 | + |
| Mito | YNCQ0007W | tT(UGU)Q1 | tRNA gene | 63862..63937 | + | |
| Mito | YNCQ0008W | tC(GCA)Q | tRNA gene | 64415..64490 | + | |
| Mito | YNCQ0009W | tH(GUG)Q | tRNA gene | 64596..64670 | + | |
| Mito | YNCQ0010W | tL(UAA)Q | tRNA gene | 66095..66179 | + | |
| Mito | YNCQ0011W | tQ(UUG)Q | tRNA gene | 66210..66285 | + | |
| Mito | YNCQ0012W | tK(UUU)Q | tRNA gene | 67061..67134 | + | |
| Mito | YNCQ0013W | tR(UCU)Q1 | tRNA gene | 67309..67381 | + | |
| Mito | YNCQ0014W | tG(UCC)Q | tRNA gene | 67468..67542 | + | |
| Mito | YNCQ0015W | tD(GUC)Q | tRNA gene | 68322..68396 | + | |
| Mito | YNCQ0016W | tS(GCU)Q1 | tRNA gene | 69203..69288 | + | |
| Mito | YNCQ0017W | tR(ACG)Q2 | tRNA gene | 69289..69362 | + | |
| Mito | YNCQ0018W | tA(UGC)Q | tRNA gene | 69846..69921 | + | |
| Mito | YNCQ0019W | tI(GAU)Q | tRNA gene | 70162..70237 | + | |
| Mito | YNCQ0020W | tY(GUA)Q | tRNA gene | 70824..70907 | + | |
| Mito | YNCQ0021W | tN(GUU)Q | tRNA gene | 71433..71503 | + | |
| Mito | YNCQ0022W | tM(CAU)Q1 | tRNA gene | 72630..72705 | + | |
| Mito | YNCQ0023W | tF(GAA)Q | tRNA gene | 77431..77505 | + | |
| Mito | YNCQ0024C | tT(UAG)Q2 | tRNA gene | 78089..78162 | - | |
| Mito | YNCQ0025W | tV(UAC)Q | tRNA gene | 78533..78608 | + | |
| Mito | YNCQ0026W | tM(CAU)Q2 | tRNA gene | 85035..85112 | + | |
| Mito | YNCQ0027W | RPM1 | Q0285 | ncRNA gene | 85295..85777 | + |
