Difference between revisions of "Mitochondrial Genome History"
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| [https://www.yeastgenome.org/locus/ORI1 ORI1], [https://www.yeastgenome.org/locus/ORI2 ORI2], [https://www.yeastgenome.org/locus/ORI3 ORI3], [https://www.yeastgenome.org/locus/ORI4 ORI4], [https://www.yeastgenome.org/locus/ORI5 ORI5], [https://www.yeastgenome.org/locus/ORI6 ORI6],[https://www.yeastgenome.org/locus/ORI7 ORI7], [https://www.yeastgenome.org/locus/ORI8 ORI8] <br> | | [https://www.yeastgenome.org/locus/ORI1 ORI1], [https://www.yeastgenome.org/locus/ORI2 ORI2], [https://www.yeastgenome.org/locus/ORI3 ORI3], [https://www.yeastgenome.org/locus/ORI4 ORI4], [https://www.yeastgenome.org/locus/ORI5 ORI5], [https://www.yeastgenome.org/locus/ORI6 ORI6],[https://www.yeastgenome.org/locus/ORI7 ORI7], [https://www.yeastgenome.org/locus/ORI8 ORI8] <br> | ||
The following mitochondrial origins of replication were added to the genome annotation based on Foury et al. 1998 as part of SGD's genome annotation revision R64.2. See also GenBank: AJ011856.1. <br> <br> | The following mitochondrial origins of replication were added to the genome annotation based on Foury et al. 1998 as part of SGD's genome annotation revision R64.2. See also GenBank: AJ011856.1. <br> <br> | ||
| − | '''Foury F, et al.''' ( | + | '''Foury F, et al.''' (1998) The complete sequence of the mitochondrial genome of Saccharomyces cerevisiae. FEBS Lett 440(3):325-31. <br> |
| − | [https://www.yeastgenome.org/reference/S000058438 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/9872396 PubMed] | [https://febs.onlinelibrary.wiley.com/doi/full/10.1016/S0014-5793%2898%2901467-7?sid=nlm%3Apubmed Full-Text] | + | [https://www.yeastgenome.org/reference/S000058438 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/9872396 PubMed] | [https://febs.onlinelibrary.wiley.com/doi/full/10.1016/S0014-5793%2898%2901467-7?sid=nlm%3Apubmed Full-Text]<br> |
|- | |- | ||
| + | | 2006-01-12 | ||
| + | | [https://www.yeastgenome.org/locus/Q0060 Q0060], [https://www.yeastgenome.org/locus/Q0065 Q0065] <br> | ||
| + | An additional exon and intron were added to both AI3/Q0060 and the overlapping ORF, AI4/Q0065. These updates were made based on personal communications from both MIPS and Phil Perlman. <br> <br> | ||
| + | |- | ||
| + | | 2004-02-06 | ||
| + | | [https://www.yeastgenome.org/locus/21S_rRNA_4 21S_rRNA_4], [https://www.yeastgenome.org/locus/Q0158 Q0158] <br> | ||
| + | 21S_rRNA_4 was merged into 21S_rRNA_3 to produce a single feature named 21S_rRNA. See GenBank AJ011856. <br> <br> | ||
| + | '''Foury F, et al.''' (1998) The complete sequence of the mitochondrial genome of Saccharomyces cerevisiae. FEBS Lett 440(3):325-31. <br> | ||
| + | [https://www.yeastgenome.org/reference/S000058438 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/9872396 PubMed] | [https://febs.onlinelibrary.wiley.com/doi/full/10.1016/S0014-5793%2898%2901467-7?sid=nlm%3Apubmed Full-Text]<br> | ||
| + | |- | ||
| + | | 2003-12-02 | ||
| + | | [https://www.yeastgenome.org/locus/9S_rRNA_1 9S_rRNA_1], [https://www.yeastgenome.org/locus/9S_rRNA_5 9S_rRNA_5],[https://www.yeastgenome.org/locus/Q0285 Q0285] <br> | ||
| + | 9S_rRNA_1 and 9S_rRNA_5 have been deleted from SGD in order to reflect a correction in the annotation of the mitochondrial genome. Although the original GenBank entry for the complete mitochondrial sequence (AJ011856) lists two 9S ribosomal RNAs (9S_rRNA_1 and 9S_rRNA_5) the accompanying publication by Foury et al. (1998) refers to a single 9S RNA component of RNase P. It appears that the GenBank entry listed two 9S RNA genes because the mitochondrial genome is circular and 9S RNA spanned the artificial breakpoint in the linear GenBank entry. The corrected SGD Locus, RPM1, represents the complete sequence of the 9S RNA component of RNAse P, as described in Stribinskis, et al., (1996) and Foury, F, et al., (1998). <br> <br> | ||
| + | '''Stribinskis V, et al.''' (1996) Yeast mitochondrial RNase P RNA synthesis is altered in an RNase P protein subunit mutant: insights into the biogenesis of a mitochondrial RNA-processing enzyme. Mol Cell Biol 16(7):3429-36. <br> | ||
| + | [https://www.yeastgenome.org/reference/S000041746 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/8668158 PubMed] | [https://mcb.asm.org/content/16/7/3429.long Full-Text] <br> | ||
| + | '''Foury F, et al.''' (1998) The complete sequence of the mitochondrial genome of Saccharomyces cerevisiae. FEBS Lett 440(3):325-31. <br> | ||
| + | [https://www.yeastgenome.org/reference/S000058438 SGD paper] | [https://www.ncbi.nlm.nih.gov/pubmed/9872396 PubMed] | [https://febs.onlinelibrary.wiley.com/doi/full/10.1016/S0014-5793%2898%2901467-7?sid=nlm%3Apubmed Full-Text]<br> | ||
Latest revision as of 09:33, 30 September 2019
This page lists all sequence and annotation changes that have been made to the Chromosome Mito systematic reference sequence since its intial release on 1996-07-31.
- There have been no sequence changes to Chromosome Mito.
- The annotation of Chromosome VII has been updated 4 times, affecting 15 features.
- Current and past versions can be obtained from SGD's Downloads.
Sequence Changes
There have been no sequence changes to Chromosome Mito.
Annotation Changes without sequence changes
| Date | Affected Features |
|---|---|
| 2014-11-19 | ORI1, ORI2, ORI3, ORI4, ORI5, ORI6,ORI7, ORI8 The following mitochondrial origins of replication were added to the genome annotation based on Foury et al. 1998 as part of SGD's genome annotation revision R64.2. See also GenBank: AJ011856.1. |
| 2006-01-12 | Q0060, Q0065 An additional exon and intron were added to both AI3/Q0060 and the overlapping ORF, AI4/Q0065. These updates were made based on personal communications from both MIPS and Phil Perlman. |
| 2004-02-06 | 21S_rRNA_4, Q0158 21S_rRNA_4 was merged into 21S_rRNA_3 to produce a single feature named 21S_rRNA. See GenBank AJ011856. |
| 2003-12-02 | 9S_rRNA_1, 9S_rRNA_5,Q0285 9S_rRNA_1 and 9S_rRNA_5 have been deleted from SGD in order to reflect a correction in the annotation of the mitochondrial genome. Although the original GenBank entry for the complete mitochondrial sequence (AJ011856) lists two 9S ribosomal RNAs (9S_rRNA_1 and 9S_rRNA_5) the accompanying publication by Foury et al. (1998) refers to a single 9S RNA component of RNase P. It appears that the GenBank entry listed two 9S RNA genes because the mitochondrial genome is circular and 9S RNA spanned the artificial breakpoint in the linear GenBank entry. The corrected SGD Locus, RPM1, represents the complete sequence of the 9S RNA component of RNAse P, as described in Stribinskis, et al., (1996) and Foury, F, et al., (1998). |
