Difference between revisions of "Systematic Sequencing Table"

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| genuine strain [[Commonly_used_strains#S288C | S288C]]  
 
| genuine strain [[Commonly_used_strains#S288C | S288C]]  
 
|  
 
|  
−
[http://www.yeastgenome.org/browse/?loc=chrII%3A1..813184&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://www.yeastgenome.org/browse/?loc=chrII%3A1..813184&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/cgi-bin/seqTools?chr=2&beg=1&end=813,184 Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/cgi-bin/seqTools?chr=2&beg=1&end=813,184 Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr02.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr02.fsa Download FASTA]
Line 37: Line 37:
 
| [[Commonly_used_strains#XJ24-24a | XJ24-24a]], [[Commonly_used_strains#AB972 | AB972]], [[Commonly_used_strains#A364A | A364A]], [[Commonly_used_strains#DC5 | DC5]]
 
| [[Commonly_used_strains#XJ24-24a | XJ24-24a]], [[Commonly_used_strains#AB972 | AB972]], [[Commonly_used_strains#A364A | A364A]], [[Commonly_used_strains#DC5 | DC5]]
 
|  
 
|  
−
[http://www.yeastgenome.org/browse/?loc=chrIII%3A1..316620&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://www.yeastgenome.org/browse/?loc=chrIII%3A1..316620&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/cgi-bin/seqTools?chr=3&beg=1&end=316,620 Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/cgi-bin/seqTools?chr=3&beg=1&end=316,620 Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr03.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr03.fsa Download FASTA]
Line 52: Line 52:
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
[http://www.yeastgenome.org/browse/?loc=chrIV%3A1..1531933&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://www.yeastgenome.org/browse/?loc=chrIV%3A1..1531933&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/cgi-bin/seqTools?chr=4&beg=1&end=1,531,933 Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/cgi-bin/seqTools?chr=4&beg=1&end=1,531,933 Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr04.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr04.fsa Download FASTA]
Line 63: Line 63:
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
[http://www.yeastgenome.org/browse/?loc=chrV%3A1..576874&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://www.yeastgenome.org/browse/?loc=chrV%3A1..576874&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/cgi-bin/seqTools?chr=5&beg=1&end=576,874 Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/cgi-bin/seqTools?chr=5&beg=1&end=576,874 Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr05.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr05.fsa Download FASTA]
Line 74: Line 74:
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
[http://www.yeastgenome.org/browse/?loc=chrVI%3A1..270161&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://www.yeastgenome.org/browse/?loc=chrVI%3A1..270161&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/cgi-bin/seqTools?chr=6&beg=1&end=270,161 Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/cgi-bin/seqTools?chr=6&beg=1&end=270,161 Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr06.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr06.fsa Download FASTA]
Line 85: Line 85:
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
|  
 
|  
−
[http://www.yeastgenome.org/browse/?loc=chrVII%3A1..1090940&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://www.yeastgenome.org/browse/?loc=chrVII%3A1..1090940&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/cgi-bin/seqTools?chr=7&beg=1&end=1,090,940 Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/cgi-bin/seqTools?chr=7&beg=1&end=1,090,940 Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr07.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr07.fsa Download FASTA]
Line 96: Line 96:
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
[http://www.yeastgenome.org/browse/?loc=chrVII%3A1..562764&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://www.yeastgenome.org/browse/?loc=chrVII%3A1..562764&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/cgi-bin/seqTools?chr=8&beg=1&end=562,643 Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/cgi-bin/seqTools?chr=8&beg=1&end=562,643 Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr08.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr08.fsa Download FASTA]
Line 107: Line 107:
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
[http://www.yeastgenome.org/browse/?loc=chrIX%3A1..439888&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://www.yeastgenome.org/browse/?loc=chrIX%3A1..439888&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/cgi-bin/seqTools?chr=9&beg=1&end=439,888 Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/cgi-bin/seqTools?chr=9&beg=1&end=439,888 Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr09.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr09.fsa Download FASTA]
Line 118: Line 118:
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
|  
 
|  
−
[http://www.yeastgenome.org/browse/?loc=chrX%3A1..745751&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://www.yeastgenome.org/browse/?loc=chrX%3A1..745751&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/cgi-bin/seqTools?chr=10&beg=1&end=745,751 Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/cgi-bin/seqTools?chr=10&beg=1&end=745,751 Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr10.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr10.fsa Download FASTA]
Line 129: Line 129:
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
|  
 
|  
−
[http://www.yeastgenome.org/browse/?loc=chrXI%3A1..666816&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://www.yeastgenome.org/browse/?loc=chrXI%3A1..666816&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>[https://www.yeastgenome.org/cgi-bin/seqTools?chr=11&beg=1&end=666,816 Gene/Sequence Resources]
 
<br>[https://www.yeastgenome.org/cgi-bin/seqTools?chr=11&beg=1&end=666,816 Gene/Sequence Resources]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr11.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr11.fsa Download FASTA]

Revision as of 07:47, 16 August 2017

Saccharomyces cerevisiae chromosome statistics and retrieval options

Chromosome Region & Reference DNA Coordinator Total Length S288c sub-strain(s) Retrieve

I
SGD, PubMed, PDF

H. Bussey, Montreal, Canada 230,218 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

II
SGD, PubMed, PDF

H. Feldmann, Muenchen, Germany 813,184 genuine strain S288C

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

III
SGD, PubMed, PDF

S.G. Oliver, Manchester, England 316,620 XJ24-24a, AB972, A364A, DC5

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

IV
SGD, PubMed, PDF

Telo to Cen: C. Jacq, Paris, France
Cen to 960K: B. Barrell, Cambridge, England
960K to 1110K: M. Johnston, St. Louis, Missouri, USA
1110K to Telo: R. Davis, Stanford, California, USA

1,531,933 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

V
SGD, PubMed, PDF

R. Davis, Stanford, California, USA 576,874 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

VI
SGD, PubMed, PDF

Y. Murakami, Tokyo, Japan 270,161 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

VII
SGD, PubMed, PDF

H. Tettelin, Louvain-la-Neuve, Belgium 1,090,940 FY1679

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

VIII
SGD, PubMed, PDF

M. Johnston, St. Louis, Missouri, USA 562,643 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

IX
SGD, PubMed, PDF

B. Barrell, Cambridge, England 439,888 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

X
SGD, PubMed, PDF

F. Galibert, Rouen, France 745,751 FY1679

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

XI
SGD, PubMed, PDF

B. Dujon, Paris, France 666,816 FY1679

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

XII

SGD, PubMed, PDF

Left: J. Hoheisel, Heidelberg, Germany
Right: M. Johnston, St. Louis, Missouri, USA

1,078,177 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

XIII

SGD, PubMed, PDF

B. Barrell, Cambridge, England 924,431 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

XIV

SGD, PubMed, PDF

P. Philippsen, Basel, Switzerland 784,333 FY1679, AB972

JBrowse Viewer
Gene/SequenceResources
Download FASTA

XV

SGD, PubMed, PDF

B. Dujon, Paris, France 1,091,291 FY1679

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

XVI

SGD, PubMed, PDF

Left 1: A. Goffeau, Louvain-la-Neuve, Belgium
Left 2: H. Bussey, Montreal, Canada
Left 2a: R. Davis, Stanford, California, USA
Right 1: B. Barrell, Cambridge, England
Right 2: M. Johnston, St. Louis, Missouri, USA

948,066 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

Mitochondrial

SGD, PubMed, PDF

Foury, Francoise, Unite de Biochimie Physiologique 85,779 FY1679

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

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