Difference between revisions of "Systematic Sequencing Table"
| Line 144: | Line 144: | ||
<br>MIPS | <br>MIPS | ||
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| − | | XII | + | | [http://www.yeastgenome.org/contig/Chromosome_XII/overview XII] |
| − | SGD, PubMed, PDF | + | [http://www.yeastgenome.org/reference/S000060083/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169871 PubMed], [[media:Johnston_chr_XII.pdf | PDF]] |
| | | | ||
''Left'': J. Hoheisel, Heidelberg, Germany | ''Left'': J. Hoheisel, Heidelberg, Germany | ||
| Line 152: | Line 152: | ||
| [[Commonly_used_strains#AB972 | AB972]] | | [[Commonly_used_strains#AB972 | AB972]] | ||
| | | | ||
| − | JBrowse Viewer | + | [https://browse.yeastgenome.org/?loc=chrXII%3A1..1078177&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CDoube_strand_break_hotspots%2CXrn1-sensitive_unstable%20transcripts_XUTs%2CScGlycerolMedia%2C3'UTRs%2CPolII_occupancy_WT&highlight= JBrowse Viewer] |
<br>Gene/SequenceResources | <br>Gene/SequenceResources | ||
| − | <br>Download FASTA | + | <br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr12.fsa Download FASTA] |
<br>MIPS | <br>MIPS | ||
|- | |- | ||
| − | | XIII SGD PubMed PDF | + | |[http://www.yeastgenome.org/contig/Chromosome_XIII/overview XIII] |
| + | [http://www.yeastgenome.org/reference/S000060084/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169872 PubMed], [[media:Barrell_chr_XIII.pdf | PDF]] | ||
| B. Barrell, Cambridge, England | | B. Barrell, Cambridge, England | ||
| 924,431 | | 924,431 | ||
| [[Commonly_used_strains#AB972 | AB972]] | | [[Commonly_used_strains#AB972 | AB972]] | ||
| | | | ||
| − | JBrowse Viewer | + | [https://browse.yeastgenome.org/?loc=chrXIII%3A1..924431&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CDoube_strand_break_hotspots%2CXrn1-sensitive_unstable%20transcripts_XUTs%2CScGlycerolMedia%2C3'UTRs%2CPolII_occupancy_WT&highlight= JBrowse Viewer] |
<br>Gene/SequenceResources | <br>Gene/SequenceResources | ||
| − | <br>Download FASTA | + | <br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr13.fsa Download FASTA] |
<br>MIPS | <br>MIPS | ||
|- | |- | ||
| − | | XIV SGD PubMed PDF | + | | [http://www.yeastgenome.org/contig/Chromosome_XIV/overview XIV] |
| + | [http://www.yeastgenome.org/reference/S000060085/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169873 PubMed], [[media:Philippsen_chr_XIV.pdf | PDF]] | ||
| P. Philippsen, Basel, Switzerland | | P. Philippsen, Basel, Switzerland | ||
| 784,333 | | 784,333 | ||
| [[Commonly_used_strains#FY1679 | FY1679]], [[Commonly_used_strains#AB972 | AB972]] | | [[Commonly_used_strains#FY1679 | FY1679]], [[Commonly_used_strains#AB972 | AB972]] | ||
| | | | ||
| − | JBrowse Viewer | + | [https://browse.yeastgenome.org/?loc=chrXIV%3A1..784333&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CDoube_strand_break_hotspots%2CXrn1-sensitive_unstable%20transcripts_XUTs%2CScGlycerolMedia%2C3'UTRs%2CPolII_occupancy_WT&highlight= JBrowse Viewer] |
<br>Gene/SequenceResources | <br>Gene/SequenceResources | ||
| − | <br>Download FASTA | + | <br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr14.fsa Download FASTA] |
<br>MIPS | <br>MIPS | ||
|- | |- | ||
Revision as of 08:58, 15 August 2017
Saccharomyces cerevisiae chromosome statistics and retrieval options
| Chromosome Region & Reference | DNA Coordinator | Total Length | S288c sub-strain(s) | Retrieve |
|---|---|---|---|---|
| H. Bussey, Montreal, Canada | 230,218 | AB972 |
JBrowse Viewer
| |
| H. Feldmann, Muenchen, Germany | 813,184 | genuine strain S288C |
JBrowse Viewer
| |
| S.G. Oliver, Manchester, England | 316,620 | XJ24-24a, AB972, A364A, DC5 |
JBrowse Viewer
| |
|
Telo to Cen: C. Jacq, Paris, France
|
1,531,933 | AB972 |
JBrowse Viewer
| |
| R. Davis, Stanford, California, USA | 576,874 | AB972 |
JBrowse Viewer
| |
| Y. Murakami, Tokyo, Japan | 270,161 | AB972 |
JBrowse Viewer
| |
| H. Tettelin, Louvain-la-Neuve, Belgium | 1,090,940 | FY1679 |
JBrowse Viewer
| |
| M. Johnston, St. Louis, Missouri, USA | 562,643 | AB972 |
JBrowse Viewer
| |
| B. Barrell, Cambridge, England | 439,888 | AB972 |
JBrowse Viewer
| |
| F. Galibert, Rouen, France | 745,751 | FY1679 |
JBrowse Viewer
| |
| B. Dujon, Paris, France | 666,816 | FY1679 |
JBrowse Viewer
| |
| XII |
Left: J. Hoheisel, Heidelberg, Germany
|
1,078,177 | AB972 |
JBrowse Viewer
|
| XIII | B. Barrell, Cambridge, England | 924,431 | AB972 |
JBrowse Viewer
|
| XIV | P. Philippsen, Basel, Switzerland | 784,333 | FY1679, AB972 |
JBrowse Viewer
|
| XV SGD PubMed PDF | B. Dujon, Paris, France | 1,091,291 | FY1679 |
JBrowse Viewer
|
| XVI SGD PubMed PDF |
Left 1: A. Goffeau, Louvain-la-Neuve, Belgium
|
948,066 | AB972 |
JBrowse Viewer
|
| Mitochondrial SGD PubMed PDF | Foury, Francoise, Unite de Biochimie Physiologique | 85,779 | FY1679 |
JBrowse Viewer
|
