Difference between revisions of "Systematic Sequencing Table"

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[http://www.yeastgenome.org/browse/?loc=chrI%3A1..230218&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
[http://www.yeastgenome.org/browse/?loc=chrI%3A1..230218&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>Gene/SequenceResources
 
<br>Gene/SequenceResources
−
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr01.fsa Dowload FASTA]
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr01.fsa Download FASTA]
 
<br>MIPS
 
<br>MIPS
 
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[http://www.yeastgenome.org/browse/?loc=chrII%3A1..813184&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
[http://www.yeastgenome.org/browse/?loc=chrII%3A1..813184&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>Gene/SequenceResources
 
<br>Gene/SequenceResources
−
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr02.fsa Dowload FASTA]
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr02.fsa Download FASTA]
 
<br>MIPS
 
<br>MIPS
 
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[http://www.yeastgenome.org/browse/?loc=chrIII%3A1..316620&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
[http://www.yeastgenome.org/browse/?loc=chrIII%3A1..316620&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>Gene/SequenceResources
 
<br>Gene/SequenceResources
−
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr03.fsa Dowload FASTA]
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr03.fsa Download FASTA]
 
<br>MIPS
 
<br>MIPS
 
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[http://www.yeastgenome.org/browse/?loc=chrIV%3A1..1531933&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
[http://www.yeastgenome.org/browse/?loc=chrIV%3A1..1531933&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>Gene/SequenceResources
 
<br>Gene/SequenceResources
−
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr04.fsa Dowload FASTA]
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr04.fsa Download FASTA]
 
<br>MIPS
 
<br>MIPS
 
|-
 
|-
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[http://www.yeastgenome.org/browse/?loc=chrV%3A1..576874&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
[http://www.yeastgenome.org/browse/?loc=chrV%3A1..576874&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>Gene/SequenceResources
 
<br>Gene/SequenceResources
−
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr05.fsa Dowload FASTA]
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr05.fsa Download FASTA]
 
<br>MIPS
 
<br>MIPS
 
|-
 
|-
−
| VI SGD PubMed PDF
+
|  
 +
[http://www.yeastgenome.org/contig/Chromosome_VI/overview VI]
 +
<br> [http://www.yeastgenome.org/reference/S000057428/overview SGD]
 +
<br> [https://www.ncbi.nlm.nih.gov/pubmed/7670463 PubMed]
 +
<br> [http://www.yeastgenome.org/community/nature_genome_dir_pdf/Chr6.pdf PDF]
 
| Y. Murakami, Tokyo, Japan
 
| Y. Murakami, Tokyo, Japan
 
| 270,161
 
| 270,161
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
JBrowse Viewer
+
[http://www.yeastgenome.org/browse/?loc=chrVI%3A1..270161&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
 
<br>Gene/SequenceResources
 
<br>Gene/SequenceResources
−
<br>Dowload FASTA
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr06.fsa Download FASTA]
 
<br>MIPS
 
<br>MIPS
 
|-
 
|-

Revision as of 11:54, 14 August 2017

Saccharomyces cerevisiae chromosome statistics and retrieval options

Chromosome Region & Reference DNA Coordinator Total Length S288c sub-strain(s) Retrieve

I
SGD
PubMed
PDF

H. Bussey, Montreal, Canada 230,218 AB972

JBrowse Viewer
Gene/SequenceResources
Download FASTA
MIPS

II
SGD
PubMed
PDF

H. Feldmann, Muenchen, Germany 813,184 genuine strain S288C

JBrowse Viewer
Gene/SequenceResources
Download FASTA
MIPS

III
SGD
PubMed
PDF

S.G. Oliver, Manchester, England 316,620 XJ24-24a, AB972, A364A, DC5

JBrowse Viewer
Gene/SequenceResources
Download FASTA
MIPS

IV
SGD
PubMed
PDF

Telo to Cen: C. Jacq, Paris, France
Cen to 960K: B. Barrell, Cambridge, England
960K to 1110K: M. Johnston, St. Louis, Missouri, USA
1110K to Telo: R. Davis, Stanford, California, USA

1,531,933 AB972

JBrowse Viewer
Gene/SequenceResources
Download FASTA
MIPS

V
SGD
PubMed
PDF

R. Davis, Stanford, California, USA 576,874 AB972

JBrowse Viewer
Gene/SequenceResources
Download FASTA
MIPS

VI
SGD
PubMed
PDF

Y. Murakami, Tokyo, Japan 270,161 AB972

JBrowse Viewer
Gene/SequenceResources
Download FASTA
MIPS

VII SGD PubMed PDF H. Tettelin, Louvain-la-Neuve, Belgium 1,090,940 FY1679

JBrowse Viewer
Gene/SequenceResources
Dowload FASTA
MIPS

VIII SGD PubMed PDF M. Johnston, St. Louis, Missouri, USA 562,643 AB972

JBrowse Viewer
Gene/SequenceResources
Dowload FASTA
MIPS

IX SGD PubMed PDF B. Barrell, Cambridge, England 439,888 AB972

JBrowse Viewer
Gene/SequenceResources
Dowload FASTA
MIPS

X SGD PubMed PDF F. Galibert, Rouen, France 745,751 FY1679

JBrowse Viewer
Gene/SequenceResources
Dowload FASTA
MIPS

XI SGD PubMed PDF B. Dujon, Paris, France 666,816 FY1679

JBrowse Viewer
Gene/SequenceResources
Dowload FASTA
MIPS

XII SGD PubMed PDF

Left: J. Hoheisel, Heidelberg, Germany
Right: M. Johnston, St. Louis, Missouri, USA

1,078,177 AB972

JBrowse Viewer
Gene/SequenceResources
Dowload FASTA
MIPS

XIII SGD PubMed PDF B. Barrell, Cambridge, England 924,431 AB972

JBrowse Viewer
Gene/SequenceResources
Dowload FASTA
MIPS

XIV SGD PubMed PDF P. Philippsen, Basel, Switzerland 784,333 FY1679, AB972

JBrowse Viewer
Gene/SequenceResources
Dowload FASTA
MIPS

XV SGD PubMed PDF B. Dujon, Paris, France 1,091,291 FY1679

JBrowse Viewer
Gene/SequenceResources
Dowload FASTA
MIPS

XVI SGD PubMed PDF

Left 1: A. Goffeau, Louvain-la-Neuve, Belgium
Left 2: H. Bussey, Montreal, Canada
Left 2a: R. Davis, Stanford, California, USA
Right 1: B. Barrell, Cambridge, England
Right 2: M. Johnston, St. Louis, Missouri, USA

948,066 AB972

JBrowse Viewer
Gene/SequenceResources
Dowload FASTA
MIPS

Mitochondrial SGD PubMed PDF Foury, Francoise, Unite de Biochimie Physiologique 85,779 FY1679

JBrowse Viewer
Gene/SequenceResources
Dowload FASTA
MIPS

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