Difference between revisions of "Seminal Yeast Literature"

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* Ralser, M., Kuhl, H., Ralser, M., et al. (2012) The Saccharomyces cerevisiae W303-K6001 cross-platform genome sequence: insights into ancestry and physiology of a laboratory mutt. Open Biol 2(8):120093. [http://www.ncbi.nlm.nih.gov/pubmed/?term=22977733 PMID:22977733]
 
* Ralser, M., Kuhl, H., Ralser, M., et al. (2012) The Saccharomyces cerevisiae W303-K6001 cross-platform genome sequence: insights into ancestry and physiology of a laboratory mutt. Open Biol 2(8):120093. [http://www.ncbi.nlm.nih.gov/pubmed/?term=22977733 PMID:22977733]
 
* Borneman, A.R., Desany, B.A., Riches, D., et al. (2012) The genome sequence of the wine yeast VIN7 reveals an allotriploid hybrid genome with Saccharomyces cerevisiae and Saccharomyces kudriavzevii origins. FEMS Yeast Res 12(1):88-96. [http://www.ncbi.nlm.nih.gov/pubmed/?term=22136070 PMID:22136070]
 
* Borneman, A.R., Desany, B.A., Riches, D., et al. (2012) The genome sequence of the wine yeast VIN7 reveals an allotriploid hybrid genome with Saccharomyces cerevisiae and Saccharomyces kudriavzevii origins. FEMS Yeast Res 12(1):88-96. [http://www.ncbi.nlm.nih.gov/pubmed/?term=22136070 PMID:22136070]
−
* Erny, C., Raoult, P., Alais, A., et al. (2012) Ecological success of a group of Saccharomyces cerevisiae/Saccharomyces kudriavzevii hybrids in the northern european wine-making environment. Appl Environ Microbiol 78(9):3256-65. [http://www.ncbi.nlm.nih.gov/pubmed/?term=22344648 PMID:22344648]
+
* Erny, C., Raoult, P., Alais, A., et al. (2012) Ecological success of a group of Saccharomyces cerevisiae/Saccharomyces kudriavzevii hybrids in the Northern European wine-making environment. Appl Environ Microbiol 78(9):3256-65. [http://www.ncbi.nlm.nih.gov/pubmed/?term=22344648 PMID:22344648]
 
* Peris, D., Lopes, C.A., Bellock, C., et al. (2012) Comparative genomics among Saccharomyces cerevisiae x Saccharomyces kudriavzevii natural hybrid strains isolated from wine and beer reveals different origins. BMC Genomics 13:407. [http://www.ncbi.nlm.nih.gov/pubmed/?term=22906207 PMID:22906207]
 
* Peris, D., Lopes, C.A., Bellock, C., et al. (2012) Comparative genomics among Saccharomyces cerevisiae x Saccharomyces kudriavzevii natural hybrid strains isolated from wine and beer reveals different origins. BMC Genomics 13:407. [http://www.ncbi.nlm.nih.gov/pubmed/?term=22906207 PMID:22906207]

Revision as of 10:29, 13 August 2013

Classical Yeast Cell Biology, Early Maps, and Genome Surveys

  • Ephrussi, B., Hottingeur, H., Tavlitski, J. (1949) Action de Tacriflavine sur les levures. II. Étude génétique du mutant "petite colonie". Ann Inst Pasteur 76:419-50.
  • Lindegren, C.C. (1949) The Yeast Cell: Its Genetics and Cytology. Educational Publishers Inc, 18:2. Open Library
  • Pomper, S., Burkholder, P.R. (1949) Studies on the Biochemical Genetics of Yeast. Proc Natl Acad Sci USA 35(8):456-64. PMID:16588920
  • Reaume, S.E., Tatum, E.L. (1949) Spontaneous and nitrogen mustard-induced nutritional deficiencies in Saccharomyces cerevisiae. Arch Biochem 22(3):331-8. PMID:18134538
  • Lindegren, C.C., Lindegren, G. (1951) Linkage relationships in Saccharomyces of genes controlling the fermentation of carbohydrates and the synthesis of vitamins, amino acids and nucleic acid components. Indian Phytopathol 4:11-20.
  • Roman, H., Hawthorne, D.C., Douglas, H.C. (1951) Polyploidy in yeast and its bearing on the occurrence of irregular genetic ratios. Proc Natl Acad Sci USA 37(2):79-84. PMID:14808168
  • Pomper, S. (1952) Purine-requiring and pyrimidine-requiring mutants of Saccharomyces cerevisiae. J Bacteriol 63(6):707-13. PMID:14938332
  • Hawthorne, D.C. (1956) The genetics of galactose fermentation in Saccharomyces hybrids. Compt Rend Lab Carlsberg, Ser Physiol 26:149-160.
  • Lindegren, C.C., Lindegren, G., Shult, E.E., Desborough, S. (1959) Chromosome maps of Saccharomyces. Nature 183(4664):800-2. PMID:13644197
  • Hawthorne, D.C., Mortimer, R.K. (1960) Chromosome Mapping in Saccharomyces: Centromere-Linked Genes. Genetics 45(8):1085-110. PMID:17247984
  • Mortimer, R.K., Schild, D. (1980) Genetic map of Saccharomyces cerevisiae. Microbiol Rev 44(4):519-71. PMID:7010111
  • Klapholz, S., Esposito, R.E. (1982) Chromosomes XIV and XVII of Saccharomyces cerevisiae constitute a single linkage group. Mol Cell Biol 2(11):1399-409. PMID:6761582
  • Carlson, M., Botstein, D. (1983) Organization of the SUC gene family in Saccharomyces. Mol Cell Biol 3(3):351-9. PMID:6843548
  • Hieter, P., Pridmore, D., Hegemann, J.H., Thomas, M., Davis, R.W., Philippsen, P. (1985) Functional selection and analysis of yeast centromeric DNA. Cell 42(3):913-21. PMID:2996783
  • Olson, M.V., Dutchik, J.E., Graham, M.Y., Brodeur, G.M., Helms, C., Frank, M., MacCollin, M., Scheinman, R., Frank, T. (1986) Random-clone strategy for genomic restriction mapping in yeast. Proc Natl Acad Sci USA 83(20):7826-30. PMID:3463999
  • Chow, T.H., Sollitti, P., Marmur, J. (1989) Structure of the multigene family of MAL loci in Saccharomyces. Mol Gen Genet 217(1):60-9. PMID:2549370
  • Link, A.J., Olson, M.V. (1991) Physical map of the Saccharomyces cerevisiae genome at 110-kilobase resolution. Genetics 127(4):681-98. PMID:2029969
  • Percudani, R., Pavesi, A., Ottonello, S. (1997) Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. J Mol Biol 268(2):322-30. PMID:9159473
  • Deshpande, A.M., Newlon, C.S. (1992) The ARS consensus sequence is required for chromosomal origin function in Saccharomyces cerevisiae. Mol Cell Biol 12(10):4305-13. PMID:1406623
  • Riles, L., Dutchik, J.E., Baktha, A., McCauley, B.K., Thayer, E.C., Leckie, M.P., Braden, V.V., Depke, J.E., Olson, M.V. (1993) Physical maps of the six smallest chromosomes of Saccharomyces cerevisiae at a resolution of 2.6 kilobase pairs. Genetics 134(1):81-150. PMID:8514151
  • Hegemann, J.H., Fleig, U.N. (1993) The centromere of budding yeast. Bioessays 15(7):451-60. PMID:8379948
  • Shirahige, K., Iwasaki, T., Rashid, M.B., Ogasawara, N., Yoshikawa, H. (1993) Location and characterization of autonomously replicating sequences from chromosome VI of Saccharomyces cerevisae. Mol Cell Biol 13(8):5043-56. PMID:8336734
  • Louis, E.J., Naumova, E.S., Lee, A., Naumov, G., Haber, J.E. (1994) The chromosome end in yeast: its mosaic nature and influence on recombinational dynamic. Genetics 136(3):789-802. PMID:8005434
  • Percudani, R., Pavesi, A., Ottonello, S. (1997) Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. J Mol Biol 268(2):322-30. PMID:9159473
  • Kim, J.M., Vanguri, S., Boeke, J.D., Gabriel, A., Voytas, D.F. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78. PMID:9582191
  • Yang, C. Theis, J.F., Newlon, C.S. (1999) Conservation of ARS elements and chromosomal DNA replication origins on chromosomes III of Saccharomyces cerevisiae and S. carlsbergensis. Genetics 152(3):933-41. PMID:10388813


Sequencing Consortium

  • Oliver, S.G., van der Aart, Q.J., Agostoni-Carbone, M.L., Aigle, M., Alberghina, L, et al. (1992) The complete DNA sequence of yeast chromosome III. Nature 357(6373):38-46. PMID:1574125
  • Dujon, B., Alexandraki, D., André, B., Ansorge, W., Baladron, V., et al. (1994) Complete DNA sequence of yeast chromosome XI. Nature 369(6479):371-8. PMID:8196765
  • Feldmann, H., Aigle, M., Aljinovic, G., André, B., Baclet, M.C., et al. (1994) Complete DNA sequence of yeast chromosome II. EMBO J 13(24):5795-809. PMID:7813418
  • Johnston, M., Andrews, S., Brinkman, R., Cooper, J., Ding, H., et al. (1994) Complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII. Science 265(5181):2077-82. PMID:8091229
  • Bussey, H., Kaback, D.B., Zhong, W., Vo, D.T., Clark, M.W., et al. (1995) The nucleotide sequence of chromosome I from Saccharomyces cerevisiae. Proc Natl Acad Sci USA 92(9):3809-13. PMID:7731988
  • Murakami, Y., Naitou, M., Hagiwara, H., Shibata, T., Ozawa, M., et al. (1995) Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae. Nat Genet 10(3):261-8. PMID:7670463
  • Galibert, F., Alexandraki, D., Baur, A., Boles, E., Chalwatzis, N., et al. (1996) Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X. Embo J 15(9):2031-49. PMID:8641269
  • Bowman, S., Churcher, C., Badcock, K., Brown. D., Chillingworth, T., et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XIII. Nature 387(6632):90-3. PMID:9169872
  • Bussey, H., Storms, R.K., Ahmed, A., Albermann, K., Allen, E., et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI. Nature 387(6632):103-5. PMID:9169875
  • Churcher, C., Bowman, S., Badcock, K., Bankier, A., Brown, D., et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome IX. Nature 387(6632):84-7. PMID:9169870
  • Dietrich, F.S., Mulligan, J., Hennessy, K., Yelton, M.A., Allen, E., et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome V. Nature 387(6632):78-81. PMID:9169868
  • Dujon, B., Albermann, K., Aldea, M., Alexandraki, D., Ansorge, W., et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XV. Nature 387(6632):98-102. PMID:9169874
  • Jacq, C., Alt-Mörbe, J., André, B., Arnold, W., Bahr, A., et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome IV. Nature 387(6632):75-8. PMID:9169867
  • Johnston, M., Hillier, L., Riles, L., Albermann, K., André, B., et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XII. Nature 387(6632):87-90. PMID:9169871
  • Philippsen, P., Kleine, K., Pöhlmann, R., Düsterhöft, A., Hamberg, K., et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XIV and its evolutionary implications. Nature 387(6632):93-8. PMID:9169873
  • Tettelin, H., Agostoni Carbone, M.L., Albermann, K., Albers, M., Arroyo, J., et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome VII. Nature 387(6632):81-4. PMID:9169869
  • Foury, F., Roganti, T., Lecrenier, N., Purnelle, B. (1998) The complete sequence of the mitrochondrial genome of Saccharomyces cerevisiae. FEBS Lett 440(3):325-31. PMID:9873296
  • Goffeau, A., Barrell, B.G., Bussey, H., Davis, R.W., Dujon, B., et al. (1996) Life with 6000 genes. Science 274(5287):546, 563-7. PMID:8849441


Strains

  • Mortimer, R., Johnston, J.R. (1986) Geneology of principal strains of the yeast genetic stock center. Genetics 113(1):35-43. PMID:3519363
  • Tawfik, O.W., Papasian, C.J., Dixon, A.Y., et al. (1989) Saccharomyces cerevisiae pneumonia in a patient with acquired immune deficiency syndrome. J Clin Microbiol 27(7):1689-91. PMID:2671026
  • Winston, F., Dollard, C., Ricupero-Hovasse, S.L. (1995) Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C. Yeast 11(1):53-5. PMID:7762301
  • Pérez-Ortín, J.E., Querol, A., Puig, S., et al. (2002) Molecular characterization of chromosomal rearrangement involved in the adaptive evolution of yeast strains. Genome Res 12(10):1533-9. PMID:12368245
  • Sniegowski, P.D., Dombrowski, P.G., Fingerman, E. (2002) Saccharomyces cerevisiae and Saccharomyces paradoxus coexist in a natural woodland site in North America and display different levels of reproductive isolation from European conspecifics. FEMS Yeast Res 1(4):299-306. PMID:12702333
  • Fay, J.C., McCullough, H.L., Sniegowski, P.D., et al. (2004) Population genetic variation in gene expression is associated with phenotypic variation in Saccharomyces cerevisiae. Genome Biol 5(4):R26. PMID:15059259
  • Gu, Z., David, L., Petrov, D., et al. (2005) Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae. Proc Natl Acad Sci USA 102(4):1092-7. PMID:15647350
  • Ronald, J., Tang, H., Brem, R.B. (2006) Genomewide evolutionary rates in laboratory and wild yeast. Genetics 174(1):541-4. PMID:16816417
  • Wei, W., McCusker, J.H., Hyman, R.W., et al. (2007) Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789. (2007) Proc Natl Acad Sci USA 104(31):12825-30. PMID:17652520
  • Omura, F., Hatanaka, H., Nakao, Y. (2007) Characterization of a novel tyrosine permease of larger brewing yeast shared by Saccharomyces cerevisiae strain RM11-1a. FEMS Yeast Res 7(8):1350-61. PMID:17825063
  • Borneman, A.R., Forgan, A.H., Pretorius, I.S., et al. (2008) Comparative genome analysis of a Saccharomyces cerevisiae wine strain. FEMS Yeast Res 8(7):1185-95. PMID:18778279
  • Argueso J.L., Carazzolle, M.F., Mieczkowski, P.A., et al. (2009) Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production. Genome Res 19(12):2258-70. PMID:19812109
  • Novo, M., Bigey, Y., Beyne, E., et al. (2009) Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118. Proc Natl Acad Sci USA 106(38):16333-8. PMID:19805302
  • Borneman, A.R., Desany, B.A., Riches, D., et al. (2011) Whole-genome comparison reveals novel genetic elements that characterize the genome of industrial strains of Saccharomyces cerevisiae. PLoS Genet 7(2):e1001287. PMID:21304888
  • Akao, T., Yashiro, I., Hosoyama, A., et al. (2011) Whole-genome sequencing of sake yeast Saccharomyces cerevisiae Kyokai no. 7. DNA Res 18(6):423-34. PMID:21900213
  • Libkind, D., Hittinger, C.T., Valério, E., et al. (2011) Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast. Proc Natl Acad Sci USA 108(35):14539-44. PMID:21873232
  • Nguyen, H.V., Legras, J.L., Neuvéglise, C., et al. (2011) Deciphering the hybridisation history leading to the Lager lineage based on mosaic genomes of Saccharomyces bayanus strains NBRC1948 and CBS380. PLoS One 6(10):e25821. PMID:21998701
  • Nijkamp, J.F., van den Broek, M., Datema, E., et al. (2012) De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology. Microb Cell Fact 11:36. PMID:22448915
  • Ralser, M., Kuhl, H., Ralser, M., et al. (2012) The Saccharomyces cerevisiae W303-K6001 cross-platform genome sequence: insights into ancestry and physiology of a laboratory mutt. Open Biol 2(8):120093. PMID:22977733
  • Borneman, A.R., Desany, B.A., Riches, D., et al. (2012) The genome sequence of the wine yeast VIN7 reveals an allotriploid hybrid genome with Saccharomyces cerevisiae and Saccharomyces kudriavzevii origins. FEMS Yeast Res 12(1):88-96. PMID:22136070
  • Erny, C., Raoult, P., Alais, A., et al. (2012) Ecological success of a group of Saccharomyces cerevisiae/Saccharomyces kudriavzevii hybrids in the Northern European wine-making environment. Appl Environ Microbiol 78(9):3256-65. PMID:22344648
  • Peris, D., Lopes, C.A., Bellock, C., et al. (2012) Comparative genomics among Saccharomyces cerevisiae x Saccharomyces kudriavzevii natural hybrid strains isolated from wine and beer reveals different origins. BMC Genomics 13:407. PMID:22906207
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