Difference between revisions of "Other Fungi"

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*[http://www.nature.com/nature/journal/v415/n6874/abs/nature724.html <i>S. pombe</i> genomic sequence] published by V. Wood <i>et al.</i>, [http://www.nature.com/ Nature] <b>415,</b> 871-880 (2002)
 
*[http://www.nature.com/nature/journal/v415/n6874/abs/nature724.html <i>S. pombe</i> genomic sequence] published by V. Wood <i>et al.</i>, [http://www.nature.com/ Nature] <b>415,</b> 871-880 (2002)
  
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*[http://www.genedb.org/genedb/pombe/index.jsp PomBase] <i>S. pombe</i> database compiled at the [http://www.sanger.ac.uk/ Sanger Centre, UK]
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*[http://www.pombase.org/ PomBase] <i>S. pombe</i> database compiled at the [http://www.sanger.ac.uk/ Sanger Centre, UK]
  
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*[http://www.sanger.ac.uk/cgi-bin/blast/submitblast/s_pombe Blast Server] for <i>S. pombe</i> compiled at the [http://www.sanger.ac.uk/ Sanger Centre, UK]
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*[http://genomebrowser.pombase.org/Multi/blastview Blast Server] for <i>S. pombe</i> compiled at the [http://www.sanger.ac.uk/ Sanger Centre, UK]
  
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*[http://www.sanger.ac.uk/Projects/S_pombe/EUseqgrp.shtml European <i>Schizosaccharomyces</i> genome sequencing project]
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*[http://www.pombase.org/status/sequencing-status European <i>Schizosaccharomyces</i> genome sequencing project]
  
 
*[http://www-bcf.usc.edu/~forsburg/ General information about <i>S. pombe</i>] from the Forsburg Lab
 
*[http://www-bcf.usc.edu/~forsburg/ General information about <i>S. pombe</i>] from the Forsburg Lab
  
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*[http://www-rcf.usc.edu/~forsburg/vectors.html <i>S. pombe</i> molecular genetics: plasmids, markers, maps and references] from the Forsburg Lab
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*[http://www-bcf.usc.edu/~forsburg/plasmids.html <i>S. pombe</i> molecular genetics: plasmids, markers, maps and references] from the Forsburg Lab
  
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*[http://www-rcf.usc.edu/~forsburg/genetable.html An <i>S. pombe</i> nomenclature guide]: <i>S. pombe</i> genes mapped to <i>S. cerevisiae</i> genes from the Forsburg Lab
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*[http://www-bcf.usc.edu/~forsburg/genetable.html An <i>S. pombe</i> nomenclature guide]: <i>S. pombe</i> genes mapped to <i>S. cerevisiae</i> genes from the Forsburg Lab
  
 
=<i>Candida albicans</i> information=
 
=<i>Candida albicans</i> information=
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*[http://candida.bri.nrc.ca/candida/index.cfm <i>Candida albicans</i> pages] at the NRC/BRI
 
  
 
*[http://www.candidagenome.org/ <i>Candida</i> Genome Database] at Stanford
 
*[http://www.candidagenome.org/ <i>Candida</i> Genome Database] at Stanford
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*[http://genolist.pasteur.fr/CandidaDB/ CandidaDB], a genomic database for <i>C. albicans</i>, part of the Galar Fungail Consortium project
 
*[http://genolist.pasteur.fr/CandidaDB/ CandidaDB], a genomic database for <i>C. albicans</i>, part of the Galar Fungail Consortium project
  
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*[http://albicansmap.ahc.umn.edu/ Institute for <i>Candida</i> experimentation] at the University of Minnesota
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*[http://www.cbs.umn.edu/lab/albicansmap Institute for <i>Candida</i> experimentation] at the University of Minnesota
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*[http://www.nlm.nih.gov/medlineplus/candidiasis.html Candidiasis information] at MEDLINE plus
 
  
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*[http://agabian.ucsf.edu/ Annotation of the <i>C. albicans</i> genome] from the Agabian Lab
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*[http://www.nlm.nih.gov/medlineplus/yeastinfections.html Candidiasis information] at MEDLINE plus
  
 
=Links to other fungal information=
 
=Links to other fungal information=
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==Euascomycota==
 
==Euascomycota==
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*[http://www.tigr.org/tdb/e2k1/afu1/ <i>Aspergillus fumigatus</i>]
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*[http://www.broadinstitute.org/annotation/genome/aspergillus_group/GenomeDescriptions.html#%3Ci%3EA._fumigatus%3C/i%3E <i>Aspergillus fumigatus</i>]
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*[http://www.broad.mit.edu/annotation/fungi/aspergillus/ <i>Aspergillus nidulans</i>]
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*[http://www.broadinstitute.org/annotation/genome/aspergillus_group/GenomeDescriptions.html#%3Ci%3EA._nidulans%3C/i%3E <i>Aspergillus nidulans</i>], [http://compbio.dfci.harvard.edu/cgi-bin/tgi/gimain.pl?gudb=a_nidulans <i>A. nidulans</i> Gene Index]
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*[http://www.broad.mit.edu/annotation/fungi/magnaporthe/ <i>Magnaporthe grisea</i>]
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*[http://www.broadinstitute.org/annotation/fungi/magnaporthe/ <i>Magnaporthe grisea</i>]
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*[http://www.broad.mit.edu/annotation/fungi/neurospora/ <i>Neurospora crassa</i>]
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*[http://www.broadinstitute.org/annotation/genome/neurospora/MultiHome.html <i>Neurospora crassa</i>]
  
 
==Basidiomycota==
 
==Basidiomycota==
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* ''Cryptococcus''
 
* ''Cryptococcus''
 
**[http://sequence-www.stanford.edu/group/C.neoformans/index.html ''Cryptococcus neoformans'' var. ''neoformans'' strain B3501]
 
**[http://sequence-www.stanford.edu/group/C.neoformans/index.html ''Cryptococcus neoformans'' var. ''neoformans'' strain B3501]
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** [http://www.tigr.org/tdb/e2k1/cna1/ ''Cryptococcus neoformans'' var. ''neoformans'' strain JEC21]
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** [http://compbio.dfci.harvard.edu/cgi-bin/tgi/gimain.pl?gudb=cryptococcus ''Cryptococcus neoformans'' var. ''neoformans'' strain JEC21]
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** ''Cryptococcus neoformans'' var. ''grubii'' H99 - [http://cneo.genetics.duke.edu/ Duke University], [http://www.broad.mit.edu/annotation/genome/cryptococcus_neoformans Fungal Genome Initiative]
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** ''Cryptococcus neoformans'' var. ''grubii'' H99 - [http://www.broadinstitute.org/annotation/genome/cryptococcus_neoformans/MultiHome.html Fungal Genome Initiative]
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** ''Cryptococcus gattii'' R265 - [http://www.broad.mit.edu/annotation/genome/cryptococcus_neoformans_b Fungal Genome Initiative]
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** ''Cryptococcus gattii'' R265 - [http://www.broadinstitute.org/annotation/genome/cryptococcus_neoformans_b/MultiHome.html Fungal Genome Initiative]
 
** ''Cryptococcus gattii'' WM276 - [http://www.bcgsc.ca/project/cryptococcus/ Kronstad Lab/British Columbia Genome Sequencing Centre]
 
** ''Cryptococcus gattii'' WM276 - [http://www.bcgsc.ca/project/cryptococcus/ Kronstad Lab/British Columbia Genome Sequencing Centre]
  
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* [http://www.broad.mit.edu/annotation/genome/coprinus_cinereus/ ''Coprinus cinereus'']
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* [http://www.broadinstitute.org/annotation/genome/coprinus_cinereus/MultiHome.html ''Coprinus cinereus'']
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* [http://www.broad.mit.edu/annotation/genome/puccinia_graminis ''Puccinia graminis f. sp. tritici'']
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* [http://www.broadinstitute.org/annotation/genome/puccinia_group/MultiHome.html ''Puccinia graminis f. sp. tritici'']
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* [http://www.broad.mit.edu/annotation/genome/ustilago_maydis/ ''Ustilago maydis''], [http://mips.gsf.de/genre/proj/ustilago/ MIPS resources].
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* [http://www.broadinstitute.org/annotation/genome/ustilago_maydis/ ''Ustilago maydis''], [http://mips.helmholtz-muenchen.de/genre/proj/ustilago/ MIPS resources].
  
 
==Archiascomycota==
 
==Archiascomycota==
 
* [http://pgp.cchmc.org/ ''Pneumocystis carinii'']
 
* [http://pgp.cchmc.org/ ''Pneumocystis carinii'']
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* [http://www.broad.mit.edu/annotation/genome/schizosaccharomyces_japonicus ''Schizosaccharomyces japonicus'']
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* [http://www.broadinstitute.org/annotation/genome/schizosaccharomyces_group/MultiHome.html ''Schizosaccharomyces japonicus'']
  
 
==Hemiascomycota==
 
==Hemiascomycota==
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* The [http://cbi.labri.fr/Genolevures/ G&eacute;nolevures] project, featuring partial genomic sequence for 13 Hemiascomycete species
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* The [http://genolevures.org/ G&eacute;nolevures] project, featuring partial genomic sequence for 13 Hemiascomycete species
  
 
==Links==
 
==Links==
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*[http://www.aspgd.org/ Aspergillus Genome Database], a database for <i>A. nidulans, A. fumigatus, A. niger</i> and related species.
 
*[http://www.aspgd.org/ Aspergillus Genome Database], a database for <i>A. nidulans, A. fumigatus, A. niger</i> and related species.
 
* [http://cryptogenome.ucsf.edu/ CryptoBase], a scientific database resource at [http://www.ucsf.edu/ UCSF] for ''C. neoformans'' var. ''grubii'' (serotype A)
 
* [http://cryptogenome.ucsf.edu/ CryptoBase], a scientific database resource at [http://www.ucsf.edu/ UCSF] for ''C. neoformans'' var. ''grubii'' (serotype A)
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*[http://fungal.genome.duke.edu fungal.genome.duke.edu], a scientific database resource at [http://duke.edu Duke University] providing Genome Browser, BLAST, and downloadable genome annotations for many fungal genomes.
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*[http://fungidb.org/fungidb/ FungiDB], a scientific database resource providing Genome Browser, BLAST, and downloadable genome annotations for many fungal genomes.

Latest revision as of 09:22, 10 June 2013

Schizosaccharomyces pombe information

Candida albicans information

  • CandidaDB, a genomic database for C. albicans, part of the Galar Fungail Consortium project

Links to other fungal information

Fungal genome sequencing projects

Euascomycota

Basidiomycota

Archiascomycota

Hemiascomycota

  • The Génolevures project, featuring partial genomic sequence for 13 Hemiascomycete species

Links

  • There is also list of currently sequenced or in progress fungal genome projects with references.

Fungal genome database projects

  • Aspergillus Genome Database, a database for A. nidulans, A. fumigatus, A. niger and related species.
  • CryptoBase, a scientific database resource at UCSF for C. neoformans var. grubii (serotype A)
  • FungiDB, a scientific database resource providing Genome Browser, BLAST, and downloadable genome annotations for many fungal genomes.
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