Difference between revisions of "Details of 2024 Reference Genome Annotation Update R64.5"
(→R64.5 Annotation update summary) |
(→R64.5 Annotation update summary) |
||
| (One intermediate revision by the same user not shown) | |||
| Line 3: | Line 3: | ||
==R64.5 Annotation update summary== | ==R64.5 Annotation update summary== | ||
This annotation update included (details in table below): | This annotation update included (details in table below): | ||
| − | *new ORFs: | + | *new ORFs: [https://www.yeastgenome.org/locus/YDL204W-A YDL204W-A], [https://www.yeastgenome.org/locus/YFR035W-A YFR035W-A], [https://www.yeastgenome.org/locus/YGR016C-A YGR016C-A], [https://www.yeastgenome.org/locus/YMR106W-A YMR106W-A], [https://www.yeastgenome.org/locus/YNL040C-A YNL040C-A], [https://www.yeastgenome.org/locus/YNL155C-A YNL155C-A] |
| − | + | *new uORFs for existing ORFs: [https://www.yeastgenome.org/locus/ATG12 ATG12/YBR217W], [https://www.yeastgenome.org/locus/ATG19 ATG19/YOL082W], [https://www.yeastgenome.org/locus/ATG5 ATG5/YPL149W], [https://www.yeastgenome.org/locus/ATG13 ATG13/YPR185W] | |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | *new uORFs for existing ORFs: | ||
| − | |||
| − | |||
| − | |||
| − | |||
*move start downstream: [https://www.yeastgenome.org/locus/EFM4 EFM4/YIL064W] | *move start downstream: [https://www.yeastgenome.org/locus/EFM4 EFM4/YIL064W] | ||
*ORF upgraded from Dubious to Verified: [https://www.yeastgenome.org/locus/YIL059C YIL059C] | *ORF upgraded from Dubious to Verified: [https://www.yeastgenome.org/locus/YIL059C YIL059C] | ||
Latest revision as of 11:33, 18 June 2024
The S. cerevisiae strain S288C reference genome annotation was updated. The new genome annotation is release R64.5.1, dated 2024-05-29. Note that the underlying genome sequence itself was not altered. The chromosome sequences remain stable.
R64.5 Annotation update summary
This annotation update included (details in table below):
- new ORFs: YDL204W-A, YFR035W-A, YGR016C-A, YMR106W-A, YNL040C-A, YNL155C-A
- new uORFs for existing ORFs: ATG12/YBR217W, ATG19/YOL082W, ATG5/YPL149W, ATG13/YPR185W
- move start downstream: EFM4/YIL064W
- ORF upgraded from Dubious to Verified: YIL059C
R64.5 Annotation update details
| Chr | Feature | Description of change | Reference |
|---|---|---|---|
| II | ATG12/YBR217W | New uORF chrII:657824..657835, partially overlaps CDS | Yang Y, et al. (2023) PMID:35363116 |
| IV | YDL204W-A | New ORF chrIV:94133..94285 | Wacholder A, et al. (2023) PMID:37164009 |
| VI | YFR035W-A | New ORF chrVI:226260..226550 | Wacholder A and Carvunis AR (2023) PMID:38048358 |
| VII | YGR016C-A | New ORF chrVII:523353..523246 | Wacholder A, et al. (2023) PMID:37164009,
Chang S, et al. (2023) PMID:37927910 |
| IX | EFM4/YIL064W | Move start 84 nucleotides downstream, new coordinates chrIX:242027..242716 | Hamey JJ, et al. (2024) PMID:38199565 |
| IX | YIL059C | Change ORF qualifier from Dubious to Verified because stable translation product detected | Wacholder A and Carvunis AR (2023) PMID:38048358 |
| XIII | YMR106W-A | New ORF chrXIII:480924..481187 | Wacholder A and Carvunis AR (2023) PMID:38048358 |
| XIV | YNL040C-A | New ORF chrXIV:552558..552478 | Wacholder A, et al. (2023) PMID:37164009 |
| XIV | YNL155C-A | New ORF chrXIV:342135..341911 | Wacholder A and Carvunis AR (2023) PMID:38048358 |
| XV | ATG19/YOL082W | New uORF chrXV:168632..168679 | Yang Y, et al. (2023) PMID:35363116 |
| XVI | ATG5/YPL149W | 4 new uORFs: chrXVI:271236..271277, chrXVI:271252..271302, chrXVI:271299..271307, chrXVI:271302..271307 | Yang Y, et al. (2023) PMID:35363116 |
| XVI | ATG13/YPR185W | New uORF chrXVI:907211..907351, partially overlaps CDS | Yang Y, et al. (2023) PMID:35363116 |
