Difference between revisions of "Systematic Sequencing Table"

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|-
 
|-
 
|  
 
|  
−
[http://www.yeastgenome.org/contig/Chromosome_I/overview I]  
+
[https://www.yeastgenome.org/contig/Chromosome_I I]  
−
<br>[http://www.yeastgenome.org/reference/S000039624/overview SGD]  
+
<br>[https://www.yeastgenome.org/reference/S000039624 SGD], [https://www.ncbi.nlm.nih.gov/pubmed/?term=7731988 PubMed], [[media:Bussey_chr_I.pdf | PDF]]
−
<br>[https://www.ncbi.nlm.nih.gov/pubmed/?term=7731988 PubMed]  
+
| [https://www-aws.yeastgenome.org/colleague/Howard_Bussey_741 H. Bussey], Montreal, Canada
−
<br>[http://www.yeastgenome.org/community/nature_genome_dir_pdf/Chr1.pdf PDF]
 
−
| H. Bussey, Montreal, Canada
 
 
| 230,218
 
| 230,218
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
[http://www.yeastgenome.org/browse/?loc=chrI%3A1..230218&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://jbrowse.yeastgenome.org/?loc=chrI%3A1..230218&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
−
<br>Gene/SequenceResources
+
<br>[https://www.yeastgenome.org/seqTools?chr=1&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
−
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr01.fsa Dowload FASTA]
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr01.fsa Download FASTA]
−
<br>MIPS
 
 
|-
 
|-
 
|  
 
|  
−
[http://www.yeastgenome.org/contig/Chromosome_II/overview II]  
+
[https://www.yeastgenome.org/contig/Chromosome_II II]  
−
<br>[http://www.yeastgenome.org/reference/S000057497/overview SGD]  
+
<br>[https://www.yeastgenome.org/reference/S000057497 SGD], [https://www.ncbi.nlm.nih.gov/pubmed/7813418 PubMed], [[media:Feldmann_chr_II.pdf | PDF]]
−
<br>[https://www.ncbi.nlm.nih.gov/pubmed/7813418 PubMed]  
+
| [https://www-aws.yeastgenome.org/colleague/Horst_Feldmann_1721 H. Feldmann], Muenchen, Germany
−
<br>[http://www.yeastgenome.org/community/nature_genome_dir_pdf/Chr2.pdf PDF]
 
−
| H. Feldmann, Muenchen, Germany
 
 
| 813,184
 
| 813,184
 
| genuine strain [[Commonly_used_strains#S288C | S288C]]  
 
| genuine strain [[Commonly_used_strains#S288C | S288C]]  
 
|  
 
|  
−
[http://www.yeastgenome.org/browse/?loc=chrII%3A1..813184&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://jbrowse.yeastgenome.org/?loc=chrII%3A1..813184&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
−
<br>Gene/SequenceResources
+
<br>[https://www.yeastgenome.org/seqTools?chr=2&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
−
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr02.fsa Dowload FASTA]
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr02.fsa Download FASTA]
−
<br>MIPS
 
 
|-
 
|-
 
|  
 
|  
−
[http://www.yeastgenome.org/contig/Chromosome_III/overview III]  
+
[https://www.yeastgenome.org/contig/Chromosome_III III]  
−
<br>[http://www.yeastgenome.org/reference/S000060078/overview SGD]  
+
<br>[https://www.yeastgenome.org/reference/S000060078 SGD], [https://www.ncbi.nlm.nih.gov/pubmed/1574125 PubMed], [[media:Oliver_chr_III.pdf | PDF]]
−
<br> [https://www.ncbi.nlm.nih.gov/pubmed/1574125 PubMed]
+
| [https://www-aws.yeastgenome.org/colleague/Stephen_G._Oliver_4376 S.G. Oliver], Manchester, England
−
<br> [http://www.yeastgenome.org/community/nature_genome_dir_pdf/Chr3.pdf PDF]
 
−
| S.G. Oliver, Manchester, England
 
 
| 316,620
 
| 316,620
 
| [[Commonly_used_strains#XJ24-24a | XJ24-24a]], [[Commonly_used_strains#AB972 | AB972]], [[Commonly_used_strains#A364A | A364A]], [[Commonly_used_strains#DC5 | DC5]]
 
| [[Commonly_used_strains#XJ24-24a | XJ24-24a]], [[Commonly_used_strains#AB972 | AB972]], [[Commonly_used_strains#A364A | A364A]], [[Commonly_used_strains#DC5 | DC5]]
 
|  
 
|  
−
[http://www.yeastgenome.org/browse/?loc=chrIII%3A1..316620&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://jbrowse.yeastgenome.org/?loc=chrIII%3A1..316620&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
−
<br>Gene/SequenceResources
+
<br>[https://www.yeastgenome.org/seqTools?chr=3&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
−
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr03.fsa Dowload FASTA]
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr03.fsa Download FASTA]
−
<br>MIPS
 
 
|-
 
|-
 
|  
 
|  
−
[http://www.yeastgenome.org/contig/Chromosome_IV/overview IV]
+
[https://www.yeastgenome.org/contig/Chromosome_IV IV]
−
<br> [http://www.yeastgenome.org/reference/S000060079/overview SGD]  
+
<br>[https://www.yeastgenome.org/reference/S000060079 SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169867 PubMed], [[media:Jacq_chr_IV.pdf | PDF]]
−
<br> [https://www.ncbi.nlm.nih.gov/pubmed/9169867 PubMed]  
 
−
<br> [http://www.yeastgenome.org/community/nature_genome_dir_pdf/Chr4.pdf PDF]
 
 
|  
 
|  
−
''Telo to Cen'': C. Jacq, Paris, France
+
''Telo to Cen'': [https://www-aws.yeastgenome.org/colleague/Jacq_Claude_8573 C. Jacq], Paris, France
−
<br>''Cen to 960K'': B. Barrell, Cambridge, England
+
<br>''Cen to 960K'': [https://www-aws.yeastgenome.org/colleague/Barclay_G._Barrell_296 B. Barrell], Cambridge, England
−
<br> ''960K to 1110K'': M. Johnston, St. Louis, Missouri, USA
+
<br> ''960K to 1110K'': [https://www-aws.yeastgenome.org/colleague/Mark_Johnston_2827 M. Johnston], St. Louis, Missouri, USA
−
<br> ''1110K to Telo'': R. Davis, Stanford, California, USA
+
<br> ''1110K to Telo'': [https://www-aws.yeastgenome.org/colleague/Ronald_W._Davis_1262 R. Davis], Stanford, California, USA
 
| 1,531,933
 
| 1,531,933
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
[http://www.yeastgenome.org/browse/?loc=chrIV%3A1..1531933&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
+
[https://jbrowse.yeastgenome.org/?loc=chrIV%3A1..1531933&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
−
<br>Gene/SequenceResources
+
<br>[https://www.yeastgenome.org/seqTools?chr=4&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
−
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr04.fsa Dowload FASTA]
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr04.fsa Download FASTA]
−
<br>MIPS
 
 
|-
 
|-
−
| V SGD PubMed PDF
+
|  
−
| R. Davis, Stanford, California, USA
+
[https://www.yeastgenome.org/contig/Chromosome_V V]
 +
<br>[https://www.yeastgenome.org/reference/S000058121 SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169868 PubMed], [[media:Dietrich_chr_V.pdf | PDF]]
 +
| [https://www-aws.yeastgenome.org/colleague/Ronald_W._Davis_1262 R. Davis], Stanford, California, USA
 
| 576,874
 
| 576,874
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
JBrowse Viewer
+
[https://jbrowse.yeastgenome.org/?loc=chrV%3A1..576874&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
−
<br>Gene/SequenceResources
+
<br>[https://www.yeastgenome.org/seqTools?chr=5&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
−
<br>Dowload FASTA
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr05.fsa Download FASTA]
−
<br>MIPS
 
 
|-
 
|-
−
| VI SGD PubMed PDF
+
|  
−
| Y. Murakami, Tokyo, Japan
+
[https://www.yeastgenome.org/contig/Chromosome_VI VI]
 +
<br>[https://www.yeastgenome.org/reference/S000057428 SGD], [https://www.ncbi.nlm.nih.gov/pubmed/7670463 PubMed], [[media:Murakami_chr_VI.pdf | PDF]]
 +
| [https://www-aws.yeastgenome.org/colleague/Yasufumi_Murakami_4124 Y. Murakami], Tokyo, Japan
 
| 270,161
 
| 270,161
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
JBrowse Viewer
+
[https://jbrowse.yeastgenome.org/?loc=chrVI%3A1..270161&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
−
<br>Gene/SequenceResources
+
<br>[https://www.yeastgenome.org/seqTools?chr=6&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
−
<br>Dowload FASTA
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr06.fsa Download FASTA]
−
<br>MIPS
 
 
|-
 
|-
−
| VII SGD PubMed PDF
+
|  
−
| H. Tettelin, Louvain-la-Neuve, Belgium
+
[https://www.yeastgenome.org/contig/Chromosome_VII VII]
 +
<br>[https://www.yeastgenome.org/reference/S000060080 SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169869 PubMed], [[media:Tettelin_chr_VII.pdf | PDF]]
 +
| [https://www-aws.yeastgenome.org/colleague/Herve_Tettelin_9854 H. Tettelin], Louvain-la-Neuve, Belgium
 
| 1,090,940
 
| 1,090,940
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
|  
 
|  
−
JBrowse Viewer
+
[https://jbrowse.yeastgenome.org/?loc=chrVII%3A1..1090940&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
−
<br>Gene/SequenceResources
+
<br>[https://www.yeastgenome.org/seqTools?chr=7&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
−
<br>Dowload FASTA
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr07.fsa Download FASTA]
−
<br>MIPS
 
 
|-
 
|-
−
| VIII SGD PubMed PDF
+
|  
−
| M. Johnston, St. Louis, Missouri, USA
+
[https://www.yeastgenome.org/contig/Chromosome_VIII VIII]
 +
<br>[https://www.yeastgenome.org/reference/S000057599 SGD], [https://www.ncbi.nlm.nih.gov/pubmed/8091229 PubMed], [[media:Johnston_chr_VIII.pdf | PDF]]
 +
| [https://www-aws.yeastgenome.org/colleague/Mark_Johnston_2827 M. Johnston], St. Louis, Missouri, USA
 
| 562,643
 
| 562,643
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
JBrowse Viewer
+
[https://jbrowse.yeastgenome.org/?loc=chrVII%3A1..562764&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
−
<br>Gene/SequenceResources
+
<br>[https://www.yeastgenome.org/seqTools?chr=8&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
−
<br>Dowload FASTA
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr08.fsa Download FASTA]
−
<br>MIPS
 
 
|-
 
|-
−
| IX SGD PubMed PDF
+
|
−
| B. Barrell, Cambridge, England
+
[https://www.yeastgenome.org/contig/Chromosome_IX IX] 
 +
<br>[https://www.yeastgenome.org/reference/S000060081 SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169870 PubMed], [[media:Barrell_chr_IX.pdf | PDF]]
 +
| [https://www-aws.yeastgenome.org/colleague/Barclay_G._Barrell_296 B. Barrell], Cambridge, England
 
| 439,888
 
| 439,888
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
JBrowse Viewer
+
[https://jbrowse.yeastgenome.org/?loc=chrIX%3A1..439888&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
−
<br>Gene/SequenceResources
+
<br>[https://www.yeastgenome.org/seqTools?chr=9&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
−
<br>Dowload FASTA
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr09.fsa Download FASTA]
−
<br>MIPS
 
 
|-
 
|-
−
| X SGD PubMed PDF
+
|
−
| F. Galibert, Rouen, France
+
[https://www.yeastgenome.org/contig/Chromosome_X X] 
 +
<br>[https://www.yeastgenome.org/reference/S000060082 SGD], [https://www.ncbi.nlm.nih.gov/pubmed/8641269 PubMed], [[media:Galibert_chr_X.pdf | PDF]]
 +
| [https://www-aws.yeastgenome.org/colleague/Francis_Galibert_1906 F. Galibert], Rouen, France
 
| 745,751
 
| 745,751
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
|  
 
|  
−
JBrowse Viewer
+
[https://jbrowse.yeastgenome.org/?loc=chrX%3A1..745751&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
−
<br>Gene/SequenceResources
+
<br>[https://www.yeastgenome.org/seqTools?chr=10&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
−
<br>Dowload FASTA
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr10.fsa Download FASTA]
−
<br>MIPS
 
 
|-
 
|-
−
| XI SGD PubMed PDF
+
|  
−
| B. Dujon, Paris, France
+
[https://www.yeastgenome.org/contig/Chromosome_XI XI] 
 +
<br>[https://www.yeastgenome.org/reference/S000057636 SGD], [https://www.ncbi.nlm.nih.gov/pubmed/8196765 PubMed], [[media:Dujon_chr_XI.pdf | PDF]]
 +
| [https://www-aws.yeastgenome.org/colleague/Bernard_Dujon_1514 B. Dujon], Paris, France
 
| 666,816
 
| 666,816
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
|  
 
|  
−
JBrowse Viewer
+
[https://jbrowse.yeastgenome.org/?loc=chrXI%3A1..666816&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CHop1-ChIP-seq%2CRec8-ChIP-seq%2CRed1-ChIP-seq%2CSmc3-ChIP-seq%2COstrow_2014_FKH1_FKH2_binding_sites&highlight= JBrowse Viewer]
−
<br>Gene/SequenceResources
+
<br>[https://www.yeastgenome.org/seqTools?chr=11&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
−
<br>Dowload FASTA
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr11.fsa Download FASTA]
−
<br>MIPS
 
 
|-
 
|-
−
| XII SGD PubMed PDF
+
| [https://www.yeastgenome.org/contig/Chromosome_XII XII]
 +
[https://www.yeastgenome.org/reference/S000060083 SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169871 PubMed], [[media:Johnston_chr_XII.pdf | PDF]]
 
|  
 
|  
−
''Left'': J. Hoheisel, Heidelberg, Germany
+
''Left'': [https://www-aws.yeastgenome.org/colleague/Jorg_D._Hoheisel_2528 J. Hoheisel], Heidelberg, Germany
−
<br>''Right'': M. Johnston, St. Louis, Missouri, USA
+
<br>''Right'': [https://www-aws.yeastgenome.org/colleague/Mark_Johnston_2827 M. Johnston], St. Louis, Missouri, USA
 
| 1,078,177
 
| 1,078,177
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
JBrowse Viewer
+
[https://jbrowse.yeastgenome.org/?loc=chrXII%3A1..1078177&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CDoube_strand_break_hotspots%2CXrn1-sensitive_unstable%20transcripts_XUTs%2CScGlycerolMedia%2C3'UTRs%2CPolII_occupancy_WT&highlight= JBrowse Viewer]
−
<br>Gene/SequenceResources
+
<br>[https://www.yeastgenome.org/seqTools?chr=12&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
−
<br>Dowload FASTA
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr12.fsa Download FASTA]
−
<br>MIPS
 
 
|-
 
|-
−
| XIII SGD PubMed PDF
+
|[https://www.yeastgenome.org/contig/Chromosome_XIII XIII]
−
| B. Barrell, Cambridge, England
+
[https://www.yeastgenome.org/reference/S000060084 SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169872 PubMed], [[media:Barrell_chr_XIII.pdf | PDF]]
 +
| [https://www-aws.yeastgenome.org/colleague/Barclay_G._Barrell_296 B. Barrell], Cambridge, England
 
| 924,431
 
| 924,431
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
JBrowse Viewer
+
[https://jbrowse.yeastgenome.org/?loc=chrXIII%3A1..924431&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CDoube_strand_break_hotspots%2CXrn1-sensitive_unstable%20transcripts_XUTs%2CScGlycerolMedia%2C3'UTRs%2CPolII_occupancy_WT&highlight= JBrowse Viewer]
−
<br>Gene/SequenceResources
+
<br>[https://www.yeastgenome.org/seqTools?chr=13&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
−
<br>Dowload FASTA
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr13.fsa Download FASTA]
−
<br>MIPS
 
 
|-
 
|-
−
| XIV SGD PubMed PDF
+
| [https://www.yeastgenome.org/contig/Chromosome_XIV XIV] 
−
| P. Philippsen, Basel, Switzerland
+
[https://www.yeastgenome.org/reference/S000060085 SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169873 PubMed], [[media:Philippsen_chr_XIV.pdf | PDF]]
 +
| [https://www-aws.yeastgenome.org/colleague/Peter_Philippsen_4609 P. Philippsen, Basel], Switzerland
 
| 784,333
 
| 784,333
 
| [[Commonly_used_strains#FY1679 | FY1679]], [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#FY1679 | FY1679]], [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
JBrowse Viewer
+
[https://jbrowse.yeastgenome.org/?loc=chrXIV%3A1..784333&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CDoube_strand_break_hotspots%2CXrn1-sensitive_unstable%20transcripts_XUTs%2CScGlycerolMedia%2C3'UTRs%2CPolII_occupancy_WT&highlight= JBrowse Viewer]
−
<br>Gene/SequenceResources
+
<br>[https://www.yeastgenome.org/seqTools?chr=14&start=&end=&submit2=Submit+Form Gene/SequenceResources]
−
<br>Dowload FASTA
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr14.fsa Download FASTA]
−
<br>MIPS
 
 
|-
 
|-
−
| XV SGD PubMed PDF
+
| [https://www.yeastgenome.org/contig/Chromosome_XV XV] 
−
| B. Dujon, Paris, France
+
[https://www.yeastgenome.org/reference/S000060298 SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169874 PubMed], [[media:Dujon_chr_XV.pdf | PDF]]
 +
| [https://www-aws.yeastgenome.org/colleague/Bernard_Dujon_1514 B. Dujon], Paris, France
 
| 1,091,291
 
| 1,091,291
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
|  
 
|  
−
JBrowse Viewer
+
[https://jbrowse.yeastgenome.org/?loc=chrXV%3A1..1091291&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CDoube_strand_break_hotspots%2CXrn1-sensitive_unstable%20transcripts_XUTs%2CScGlycerolMedia%2C3'UTRs%2CPolII_occupancy_WT&highlight= JBrowse Viewer]
−
<br>Gene/SequenceResources
+
<br>[https://www.yeastgenome.org/seqTools?chr=15&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
−
<br>Dowload FASTA
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr15.fsa Download FASTA]
−
<br>MIPS
 
 
|-
 
|-
−
| XVI SGD PubMed PDF
+
| [https://www.yeastgenome.org/contig/Chromosome_XVI XVI] 
 +
[https://www.yeastgenome.org/reference/S000045447 SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169875 PubMed], [[media:Bussey_chr_XVI.pdf | PDF]]
 
|  
 
|  
−
''Left 1'': A. Goffeau, Louvain-la-Neuve, Belgium
+
''Left 1'': [https://www-aws.yeastgenome.org/colleague/Andre_Goffeau_2067 A. Goffeau], Louvain-la-Neuve, Belgium
−
<br>''Left 2'': H. Bussey, Montreal, Canada
+
<br>''Left 2'': [https://www-aws.yeastgenome.org/colleague/Howard_Bussey_741 H. Bussey], Montreal, Canada
−
<br> ''Left 2a'': R. Davis, Stanford, California, USA
+
<br> ''Left 2a'': [https://www-aws.yeastgenome.org/colleague/Ronald_W._Davis_1262 R. Davis], Stanford, California, USA
−
<br> ''Right 1'': B. Barrell, Cambridge, England
+
<br> ''Right 1'': [https://www-aws.yeastgenome.org/colleague/Barclay_G._Barrell_296 B. Barrell], Cambridge, England
−
<br> ''Right 2'': M. Johnston, St. Louis, Missouri, USA
+
<br> ''Right 2'': [https://www-aws.yeastgenome.org/colleague/Mark_Johnston_2827 M. Johnston], St. Louis, Missouri, USA
 
| 948,066
 
| 948,066
 
| [[Commonly_used_strains#AB972 | AB972]]
 
| [[Commonly_used_strains#AB972 | AB972]]
 
|  
 
|  
−
JBrowse Viewer
+
[https://jbrowse.yeastgenome.org/?loc=chrXVI%3A1..948066&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CDoube_strand_break_hotspots%2CXrn1-sensitive_unstable%20transcripts_XUTs%2CScGlycerolMedia%2C3'UTRs%2CPolII_occupancy_WT&highlight= JBrowse Viewer]
−
<br>Gene/SequenceResources
+
<br>[https://www.yeastgenome.org/seqTools?chr=16&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
−
<br>Dowload FASTA
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr16.fsa Download FASTA]
−
<br>MIPS
 
 
|-
 
|-
−
| Mitochondrial SGD PubMed PDF
+
| [https://www.yeastgenome.org/contig/Chromosome_mito Mitochondrial]
−
| Foury, Francoise, Unite de Biochimie Physiologique
+
[https://www.yeastgenome.org/reference/S000058438 SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9872396 PubMed], [[media:Foury_chr_mito.pdf | PDF]]
 +
| [https://www-aws.yeastgenome.org/colleague/Francoise_Foury_1817 Foury, Francoise], Unite de Biochimie Physiologique
 
| 85,779
 
| 85,779
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
| [[Commonly_used_strains#FY1679 | FY1679]]
 
|  
 
|  
−
JBrowse Viewer
+
[https://jbrowse.yeastgenome.org/?loc=chrmt%3A1..85779&tracks=DNA%2CAll%20Annotated%20Sequence%20Features%2CDoube_strand_break_hotspots%2CXrn1-sensitive_unstable%20transcripts_XUTs%2CScGlycerolMedia%2C3'UTRs%2CPolII_occupancy_WT&highlight= JBrowse Viewer]
−
<br>Gene/SequenceResources
+
<br>[https://www.yeastgenome.org/seqTools?chr=17&start=&end=&submit2=Submit+Form Gene/Sequence Resources]
−
<br>Dowload FASTA
+
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chrmt.fsa Download FASTA]
−
<br>MIPS
 
 
|-
 
|-

Latest revision as of 11:18, 11 April 2024

Saccharomyces cerevisiae chromosome statistics and retrieval options

Chromosome Region & Reference DNA Coordinator Total Length S288c sub-strain(s) Retrieve

I
SGD, PubMed, PDF

H. Bussey, Montreal, Canada 230,218 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

II
SGD, PubMed, PDF

H. Feldmann, Muenchen, Germany 813,184 genuine strain S288C

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

III
SGD, PubMed, PDF

S.G. Oliver, Manchester, England 316,620 XJ24-24a, AB972, A364A, DC5

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

IV
SGD, PubMed, PDF

Telo to Cen: C. Jacq, Paris, France
Cen to 960K: B. Barrell, Cambridge, England
960K to 1110K: M. Johnston, St. Louis, Missouri, USA
1110K to Telo: R. Davis, Stanford, California, USA

1,531,933 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

V
SGD, PubMed, PDF

R. Davis, Stanford, California, USA 576,874 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

VI
SGD, PubMed, PDF

Y. Murakami, Tokyo, Japan 270,161 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

VII
SGD, PubMed, PDF

H. Tettelin, Louvain-la-Neuve, Belgium 1,090,940 FY1679

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

VIII
SGD, PubMed, PDF

M. Johnston, St. Louis, Missouri, USA 562,643 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

IX
SGD, PubMed, PDF

B. Barrell, Cambridge, England 439,888 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

X
SGD, PubMed, PDF

F. Galibert, Rouen, France 745,751 FY1679

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

XI
SGD, PubMed, PDF

B. Dujon, Paris, France 666,816 FY1679

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

XII

SGD, PubMed, PDF

Left: J. Hoheisel, Heidelberg, Germany
Right: M. Johnston, St. Louis, Missouri, USA

1,078,177 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

XIII

SGD, PubMed, PDF

B. Barrell, Cambridge, England 924,431 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

XIV

SGD, PubMed, PDF

P. Philippsen, Basel, Switzerland 784,333 FY1679, AB972

JBrowse Viewer
Gene/SequenceResources
Download FASTA

XV

SGD, PubMed, PDF

B. Dujon, Paris, France 1,091,291 FY1679

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

XVI

SGD, PubMed, PDF

Left 1: A. Goffeau, Louvain-la-Neuve, Belgium
Left 2: H. Bussey, Montreal, Canada
Left 2a: R. Davis, Stanford, California, USA
Right 1: B. Barrell, Cambridge, England
Right 2: M. Johnston, St. Louis, Missouri, USA

948,066 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

Mitochondrial

SGD, PubMed, PDF

Foury, Francoise, Unite de Biochimie Physiologique 85,779 FY1679

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

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