Difference between revisions of "Software"
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*[[MochiView]] Desktop genome browsing and motif analysis software (with easy import of S. cerevisiae genome/genes/motif libraries) | *[[MochiView]] Desktop genome browsing and motif analysis software (with easy import of S. cerevisiae genome/genes/motif libraries) | ||
*[[EGAN]] Downstream/pathway/gene set enrichment/visualization tool for exploring results of -omics experiments | *[[EGAN]] Downstream/pathway/gene set enrichment/visualization tool for exploring results of -omics experiments | ||
| + | *[[REVIGO]] A Web server that summarizes and visualizes long lists of Gene Ontology terms | ||
| + | *[[Primers-4-Yeast]] Design primers for gene targeting of PCR-based transformation cassettes into S. cerevisiae, and for validation of correct insertion. | ||
| + | *[[MyLabStocks]] Manage molecular biology stocks of your lab (primers, strains, plasmids and more...) | ||
| + | *[[GRSandPRIMED|GRS]]: Retrieve custom sequences from any annotated genome | ||
| + | *[[Yeastriction]] A web based tool to select targets for CRISPR editing of the genome. | ||
| + | *[[Genome Compiler]] is a free all-in-one software platform for DNA design and visualization, data management, lab collaboration and seamless DNA ordering. | ||
| + | *[[YeaZ]] is a Python-based graphical user interface and web application that applies a convolutional neural network, based on a training set, to aid in the visualization of yeast images by segmentation. | ||
| + | *[https://github.com/irahorecka/sgd-rest sgd-rest] is a Python-based wrapper for the SGD REST API. | ||
Latest revision as of 10:12, 31 July 2023
- MochiView Desktop genome browsing and motif analysis software (with easy import of S. cerevisiae genome/genes/motif libraries)
- EGAN Downstream/pathway/gene set enrichment/visualization tool for exploring results of -omics experiments
- REVIGO A Web server that summarizes and visualizes long lists of Gene Ontology terms
- Primers-4-Yeast Design primers for gene targeting of PCR-based transformation cassettes into S. cerevisiae, and for validation of correct insertion.
- MyLabStocks Manage molecular biology stocks of your lab (primers, strains, plasmids and more...)
- GRS: Retrieve custom sequences from any annotated genome
- Yeastriction A web based tool to select targets for CRISPR editing of the genome.
- Genome Compiler is a free all-in-one software platform for DNA design and visualization, data management, lab collaboration and seamless DNA ordering.
- YeaZ is a Python-based graphical user interface and web application that applies a convolutional neural network, based on a training set, to aid in the visualization of yeast images by segmentation.
- sgd-rest is a Python-based wrapper for the SGD REST API.
