Difference between revisions of "SGD Newsletter, Spring 2021"
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*New systematic nomenclature system for [https://www.yeastgenome.org/search?q=YNC&category=locus entire annotated complement of ncRNAs] | *New systematic nomenclature system for [https://www.yeastgenome.org/search?q=YNC&category=locus entire annotated complement of ncRNAs] | ||
| − | Various sequence and annotation files are available on SGD's [http://sgd-archive.yeastgenome.org/sequence/S288C_reference/ Downloads] site. | + | Various sequence and annotation files are available on SGD's [http://sgd-archive.yeastgenome.org/sequence/S288C_reference/ Downloads] site. You can find more update details and see the new systematic nomenclature system for noncoding RNA genes on the [https://wiki.yeastgenome.org/index.php/Details_of_2021_Reference_Genome_Annotation_Update_R64.3#R64.3_Annotation_update_summary Details of 2021 Reference Genome Annotation Update R64.3] SGD Wiki page. |
==Alliance== | ==Alliance== | ||
Revision as of 09:29, 21 May 2021
About this newsletter:
This is the Summer 2021 issue of the SGD newsletter. The goal of this newsletter is to inform our users about new features in SGD and to foster communication within the yeast community.
You can also subscribe to SGD's RSS feed to receive updates on SGD news:
http://www.yeastgenome.org/feed
Contents
R64.3 Annotation Update
SGD curators periodically update the chromosomal annotations of the S. cerevisiae Reference Genome, which is derived from strain S288C.
The R64.3 annotation release included various updates and additions:
- 7 new ORFs: OTO1/YGR227C-A, YHR052C-B, YHR054C-B, YJR107C-A, YKL104W-A, YLR379W-A, YMR008C-A
- 5 new ncRNAs: GAL10-ncRNA, TBRT/XUT_2F-154, SUT169, PHO84 lncRNA, GAL4 lncRNA
- 2 new uORFs for ROK1/YGL171W
- 1 new recombination enhancer: RE
- 1 new LTR: YELWdelta27
- 3 ORFs with shifted translation starts: HPA3/YEL066W, YJR012C, LTO1/YNL260C
- 1 ORF with shifted translation stop plus new intron: LDO45/YMR147W
- Changed feature_type (and SO_term) for non-transcribed spacers: NTS1-2, NTS2-1, NTS2-2
- New systematic nomenclature system for entire annotated complement of ncRNAs
Various sequence and annotation files are available on SGD's Downloads site. You can find more update details and see the new systematic nomenclature system for noncoding RNA genes on the Details of 2021 Reference Genome Annotation Update R64.3 SGD Wiki page.
Alliance
YeastMine Updates and New Templates
SGD has updated the current Gene-->UTRs template with newly calculated 5' and 3' UTR sequence/coordinates. We have also added a new template for Transcripts based on the data from the Pelachano et al 2013 study.
