Difference between revisions of "Details of 2021 Reference Genome Annotation Update R64.3"

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The ''S. cerevisiae'' strain S288C reference genome annotation was updated in its first major update since 2014. The new genome annotation is release R64.3.1, dated 2021-04-22.  Note that the underlying genome sequence itself was not altered in any way.
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The ''S. cerevisiae'' strain S288C reference genome annotation was updated in its first major update since 2014. The new genome annotation is release R64.3.1, dated 2021-04-21.  Note that the underlying genome sequence itself was not altered in any way.
 
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==R64.3 Annotation update summary==
 
==R64.3 Annotation update summary==

Revision as of 11:55, 27 April 2021

The S. cerevisiae strain S288C reference genome annotation was updated in its first major update since 2014. The new genome annotation is release R64.3.1, dated 2021-04-21. Note that the underlying genome sequence itself was not altered in any way.

R64.3 Annotation update summary

This annotation update included (details in table below):

R64.3 Annotation update details

Chr Feature Description of change Reference
II YNCB0008W aka GAL10-ncRNA New ncRNA antisense to GAL10
  • coordinates 276805..280645
 Houseley et al 2008 PMID:19061643,

Pinskaya et al 2009 PMID:19407817,
Geisler et al 2012 PMID:22226051

II YNCB0014W aka TBRT/XUT_2F-154 New ncRNA antisense to TAT1
  • coordinates 376610..378633
 Awasthi et al 2020 PMID:32081726
III RE/RE301 New recombination enhancer
  • coordinates 29108..29809
 Wu and Haber 1996 PMID:8861911
V YELWdelta27 New Ty1 LTR
  • coordinates 449274..449626
 Nene et al 2018 PMID:29320491
V HPA3/YEL066W Moved translation start to Met19
  • old coordinates: 26667..27206
  • new coordinates: 26721..27206
 Sampath et al 2013 PMID:23775086
VII OTO1/YGR227C-A New ORF
  • coordinates 949052..949225 Crick
 Makanae et al 2015 PMID:25781884
VII ROK1/YGL171W Two new uORFs
  • coordinates uORF1: 182286..182407
  • coordinates uORF2: 182291..182329
 Jeon and Kim 2010 PMID:20969870
VIII YHR052C-B New ORF
  • coordinates: 212519..212692 Crick
 He et al 2018 PMID:29897761
VIII YHR054C-B New ORF
  • coordinates: 214517..214690 Crick
 He et al 2018 PMID:29897761
VIII SUT169/YNCH0011W New ncRNA
  • coordinates 378254..379237
 Xu et al 2009 PMID:19169243,

Geisler et al 2012 PMID:22226051,
Huber et al 2016 PMID:27292640,
Bunina et al 2017 PMID:28977638

X YJR012C Moved start to Met76
  • old coordinates: 459795..460418 Crick
  • new coordinates: 459795..460193 Crick
 Sadhu et al 2018 PMID:29632376
X YJR107C-A New ORF
  • coordinates 628457..628693 Crick
 Yagoub et al 2015 PMID:26554900,
He et al 2018 PMID:29897761
XI YKL104W-A New ORF
  • coordinates 245032..245286
 He et al 2018 PMID:29897761
XII YLR379W-A New ORF
  • coordinates: 877444..877716
 Internal reanalysis of results from Song et al 2015 to find and annotate missing S288C ORFs PMID:25781462
XII NTS1-2, NTS2-1, NTS2-2 Change feature_type/SO_term from SO:0001637 rRNA_gene to SO:0000183 non_transcribed_region
XIII LDO45/YMR147W Shift stop to be same as LDO16/YMR148W, add intron
  • old coordinates 559199..559870
  • new coordinates 559199..559780, 560156..560812
 Eisenberg-Bord et al 2018 PMID:29187527
XIII YMR008C-A New ORF
  • coordinates 283081..283548 Crick
 Internal reanalysis of results from Song et al 2015 to find and annotate missing S288C ORFs PMID:25781462
XIII YNCM0001W aka PHO84 lncRNA New ncRNA
  • coordinates: 23564..26578
 Camblong et al 2007 PMID:18022365
XIV LTO1/YNL260C Move start to Met37
  • old coordinates: 156859..157455 Crick
  • new coordinates: 156859..157347 Crick
 Paul et al 2015 PMID:26182403
XVI YNCP0002W aka GAL4 lncRNA New ncRNA
  • coordinates: 79562..82648
 Geisler et al 2012 PMID:22226051

New systematic nomenclature system for noncoding RNA genes

Chr Systematic_name Gene_name Alias Feature_type Coordinates Strand
I YNCA0001W HRA1 ncRNA gene 99305..99868 +
I YNCA0002W TRN1 tP(UGG)A tRNA gene 139152..139254 +
I YNCA0003W SNR18 snR18 snoRNA gene 142367..142468 +
I YNCA0004W TGA1 tA(UGC)A tRNA gene 166267..166339 +
I YNCA0005W SUP56 tL(CAA)A tRNA gene 181141..181254 +
I YNCA0006C tS(AGA)A tRNA gene 182522..182603 -
II YNCB0001W tL(UAA)B1 tRNA gene 9583..9666 +
II YNCB0002W tF(GAA)B tRNA gene 36398..36488 +
II YNCB0003W SNR56 snR56 snoRNA gene 88190..88277 +
II YNCB0004W tI(AAU)B tRNA gene 197494..197567 +
II YNCB0005C tG(GCC)B tRNA gene 197629..197699 -
II YNCB0006W tS(AGA)B tRNA gene 227075..227156 +
II YNCB0007W tT(AGU)B tRNA gene 266378..266450 +
II YNCB0008W GAL10-ncRNA ncRNA gene 276805..280645 +
II YNCB0009C SNR161 snR161 snoRNA gene 307185..307345 -
II YNCB0010W TLC1 telomerase RNA gene 307587..308887 +
II YNCB0011C tV(UAC)B tRNA gene 326792..326865 -
II YNCB0012W tL(UAA)B2 tRNA gene 347603..347686 +
II YNCB0013W tQ(UUG)B tRNA gene 350827..350898 +
II YNCB0014W TBRT XUT_2F-154 ncRNA gene 376610..378633 +
II YNCB0015W tR(UCU)B tRNA gene 405878..405949 +
II YNCB0016W tD(GUC)B tRNA gene 405960..406031 +
II YNCB0017C tC(GCA)B tRNA gene 643007..643078 -
II YNCB0018W tE(UUC)B tRNA gene 645167..645238 +
II YNCB0019C LSR1 snRNA gene 680688..681862 -
III YNCC0001C tE(UUC)C tRNA gene 82462..82533 -
III YNCC0002W SUP53 tL(CAA)C tRNA gene 90859..90972 +
III YNCC0003C SNR43 snR43 snoRNA gene 107504..107712 -
III YNCC0004C SUF2 tP(AGG)C tRNA gene 123577..123648 -
III YNCC0005W tN(GUU)C tRNA gene 127716..127789 +
III YNCC0006C SNR33 snR33 snoRNA gene 142364..142546 -
III YNCC0007C SUF16 tG(GCC)C tRNA gene 142701..142771 -
III YNCC0008W tM(CAU)C tRNA gene 149920..149991 +
III YNCC0009C tK(CUU)C tRNA gene 151284..151356 -
III YNCC0010C tQ(UUG)C tRNA gene 168301..168372 -
III YNCC0011W SNR65 snR65 snoRNA gene 177183..177282 +
III YNCC0012C SNR189 snR189 snoRNA gene 178610..178798 -
III YNCC0013W SUP61 tS(CGA)C tRNA gene 227942..228042 +
III YNCC0014W tT(AGU)C tRNA gene 295484..295556 +
IV YNCD0001W tG(GCC)D1 tRNA gene 83548..83618 +
IV YNCD0002C SNR63 snR63 snoRNA gene 323217..323471 -
IV YNCD0003W tK(UUU)D tRNA gene 359577..359672 +
IV YNCD0004W tA(AGC)D tRNA gene 410379..410451 +
IV YNCD0005C tT(AGU)D tRNA gene 434264..434336 -
IV YNCD0006W tS(AGA)D1 tRNA gene 437772..437853 +
IV YNCD0007C tV(UAC)D tRNA gene 488797..488870 -
IV YNCD0008W tL(UAA)D tRNA gene 519743..519826 +
IV YNCD0009W tQ(UUG)D1 tRNA gene 520972..521043 +
IV YNCD0010C SNR47 snR47 snoRNA gene 541602..541700 -
IV YNCD0011W tR(UCU)D tRNA gene 568882..568953 +
IV YNCD0012W tD(GUC)D tRNA gene 568964..569035 +
IV YNCD0013C tR(ACG)D tRNA gene 619969..620041 -
IV YNCD0014C tQ(UUG)D2 tRNA gene 645153..645224 -
IV YNCD0015C tI(AAU)D tRNA gene 668007..668080 -
IV YNCD0016C tQ(UUG)D3 tRNA gene 802731..802802 -
IV YNCD0017W tI(UAU)D tRNA gene 884361..884493 +
IV YNCD0018W SUP2 tY(GUA)D tRNA gene 946312..946400 +
IV YNCD0019C tS(AGA)D2 tRNA gene 980974..981055 -
IV YNCD0020W tG(GCC)D2 tRNA gene 992832..992902 +
IV YNCD0021C tE(CUC)D tRNA gene 1017207..1017278 -
IV YNCD0022C tV(CAC)D tRNA gene 1075472..1075544 -
IV YNCD0023C tF(GAA)D tRNA gene 1095370..1095461 -
IV YNCD0024C tX(XXX)D tRNA gene 1150842..1150941 -
IV YNCD0025W EMT1 tM(CAU)D tRNA gene 1175829..1175901 +
IV YNCD0026W tK(CUU)D1 tRNA gene 1201750..1201822 +
IV YNCD0027C SUF3 tG(CCC)D tRNA gene 1257008..1257079 -
IV YNCD0028W tS(AGA)D3 tRNA gene 1305630..1305712 +
IV YNCD0029C tK(CUU)D2 tRNA gene 1352466..1352538 -
IV YNCD0030W SNR13 snR13 snoRNA gene 1402919..1403042 +
IV YNCD0031C tL(CAA)D tRNA gene 1461715..1461829 -
IV YNCD0032C SNR84 snR84 snoRNA gene 1492477..1493026 -
V YNCE0001C SNR80 snR80 snoRNA gene 52150..52320 -
V YNCE0002W SNR67 snR67 snoRNA gene 61352..61433 +
V YNCE0003W SNR53 snR53 snoRNA gene 61699..61789 +
V YNCE0004C tG(GCC)E tRNA gene 61890..61960 -
V YNCE0005W tS(AGA)E tRNA gene 86604..86685 +
V YNCE0006W IMT4 tM(CAU)E tRNA gene 100133..100204 +
V YNCE0007C RPR1 ncRNA gene 117667..118035 -
V YNCE0008C tQ(UUG)E2 tRNA gene 131082..131153 -
V YNCE0009C tK(CUU)E1 tRNA gene 135425..135497 -
V YNCE0010W tR(UCU)E tRNA gene 138666..138737 +
V YNCE0011C SNR14 snR14 snRNA gene 167427..167586 -
V YNCE0012W tE(UUC)E1 tRNA gene 177099..177170 +
V YNCE0013W tH(GUG)E1 tRNA gene 207357..207428 +
V YNCE0014W tQ(UUG)E1 tRNA gene 250286..250357 +
V YNCE0015C SUP19 tS(UGA)E tRNA gene 288443..288524 -
V YNCE0016C tA(UGC)E tRNA gene 312023..312095 -
V YNCE0017W SRG1 ncRNA gene 322212..322762 +
V YNCE0018W tE(UUC)E2 tRNA gene 354934..355005 +
V YNCE0019W SNR4 snR4 snoRNA gene 424698..424883 +
V YNCE0020C SNR52 snR52 snoRNA gene 431129..431220 -
V YNCE0021C tH(GUG)E2 tRNA gene 434541..434612 -
V YNCE0022C tK(CUU)E2 tRNA gene 435752..435824 -
V YNCE0023W tV(AAC)E1 tRNA gene 438700..438773 +
V YNCE0024W SCR1 ncRNA gene 441987..442508 +
V YNCE0025C tI(AAU)E1 tRNA gene 443202..443275 -
V YNCE0026W tV(AAC)E2 tRNA gene 469457..469530 +
V YNCE0027C tE(UUC)E3 tRNA gene 487331..487402 -
V YNCE0028C tR(ACG)E tRNA gene 492352..492424 -
V YNCE0029C tI(AAU)E2 tRNA gene 551285..551358 -
VI YNCF0001C RUF21 ncRNA gene 57815..58521 -
VI YNCF0002W SUF9 tP(UGG)F tRNA gene 101376..101478 +
VI YNCF0003C RUF20 ncRNA gene 131061..131503 -
VI YNCF0004C tN(GUU)F tRNA gene 137486..137559 -
VI YNCF0005C tF(GAA)F tRNA gene 157916..158007 -
VI YNCF0006W SUF20 tG(GCC)F1 tRNA gene 162228..162298 +
VI YNCF0007W SUP11 tY(GUA)F1 tRNA gene 167437..167525 +
VI YNCF0008C tG(GCC)F2 tRNA gene 180974..181044 -
VI YNCF0009C tS(GCU)F tRNA gene 191513..191613 -
VI YNCF0010C RUF22 ncRNA gene 199299..199813 -
VI YNCF0011C tA(AGC)F tRNA gene 204924..204996 -
VI YNCF0012C SUP6 tY(GUA)F2 tRNA gene 210619..210707 -
VI YNCF0013W RUF23 ncRNA gene 221714..221967 +
VI YNCF0014C tK(CUU)F tRNA gene 226688..226760 -
VII YNCG0001C RME3 ncRNA gene 33109..35013 -
VII YNCG0002C tV(AAC)G3 tRNA gene 73829..73902 -
VII YNCG0003C tH(GUG)G1 tRNA gene 110625..110696 -
VII YNCG0004W tK(UUU)G1 tRNA gene 115488..115583 +
VII YNCG0005W tK(CUU)G1 tRNA gene 122269..122341 +
VII YNCG0006C RME2 ncRNA gene 141898..144120 -
VII YNCG0007C tK(CUU)G2 tRNA gene 185714..185786 -
VII YNCG0008W tL(CAA)G1 tRNA gene 205521..205634 +
VII YNCG0009C tW(CCA)G1 tRNA gene 287350..287455 -
VII YNCG0010W SNR82 snR82 snoRNA gene 316788..317055 +
VII YNCG0011W tH(GUG)G2 tRNA gene 319781..319852 +
VII YNCG0012W SOE1 tE(UUC)G1 tRNA gene 328583..328654 +
VII YNCG0013W SNR10 snR10 snoRNA gene 345986..346230 +
VII YNCG0014C SNR39 snR39 snoRNA gene 365163..365251 -
VII YNCG0015C SNR39B snR39B snoRNA gene 366374..366469 -
VII YNCG0016C tE(UUC)G2 tRNA gene 401527..401598 -
VII YNCG0017W tR(UCU)G1 tRNA gene 405470..405541 +
VII YNCG0018C tV(AAC)G1 tRNA gene 412294..412367 -
VII YNCG0019W SUP54 tL(CAA)G2 tRNA gene 423092..423205 +
VII YNCG0020C tF(GAA)G tRNA gene 440716..440807 -
VII YNCG0021W tD(GUC)G1 tRNA gene 531610..531681 +
VII YNCG0022W tE(UUC)G3 tRNA gene 541850..541921 +
VII YNCG0023C tD(GUC)G2 tRNA gene 544577..544648 -
VII YNCG0024W SNR46 snR46 snoRNA gene 545370..545566 +
VII YNCG0025C tS(AGA)G tRNA gene 561662..561743 -
VII YNCG0026W SNR48 snR48 snoRNA gene 609584..609696 +
VII YNCG0027W tT(UGU)G1 tRNA gene 661749..661820 +
VII YNCG0028W tL(GAG)G tRNA gene 700675..700756 +
VII YNCG0029C tK(UUU)G2 tRNA gene 700953..701048 -
VII YNCG0030C tC(GCA)G tRNA gene 707108..707179 -
VII YNCG0031W tN(GUU)G tRNA gene 731137..731210 +
VII YNCG0032W tR(UCU)G3 tRNA gene 736340..736411 +
VII YNCG0033W tI(AAU)G tRNA gene 739122..739195 +
VII YNCG0034W tA(AGC)G tRNA gene 774349..774421 +
VII YNCG0035W SUF4 tG(UCC)G tRNA gene 779616..779687 +
VII YNCG0036W tA(UGC)G tRNA gene 794417..794489 +
VII YNCG0037W tV(AAC)G2 tRNA gene 823482..823555 +
VII YNCG0038C tR(UCU)G2 tRNA gene 828723..828794 -
VII YNCG0039W tG(GCC)G1 tRNA gene 845649..845719 +
VII YNCG0040C tL(CAA)G3 tRNA gene 857378..857491 -
VII YNCG0041W tK(CUU)G3 tRNA gene 876394..876466 +
VII YNCG0042C tW(CCA)G2 tRNA gene 878710..878815 -
VII YNCG0043C tG(GCC)G2 tRNA gene 930953..931023 -
VII YNCG0044C SNR7-L snR7-L snRNA gene 939459..939672 -
VII YNCG0045C SNR7-S snR7-S snRNA gene 939494..939672 -
VII YNCG0046W tT(UGU)G2 tRNA gene 1004216..1004287 +
VIII YNCH0001W tH(GUG)H tRNA gene 62755..62826 +
VIII YNCH0002C tV(AAC)H tRNA gene 85298..85371 -
VIII YNCH0003C tT(AGU)H tRNA gene 116107..116179 -
VIII YNCH0004C tS(AGA)H tRNA gene 133026..133107 -
VIII YNCH0005W tQ(UUG)H tRNA gene 134321..134392 +
VIII YNCH0006C tA(AGC)H tRNA gene 146242..146314 -
VIII YNCH0007W RUF5-1 ncRNA gene 212409..213118 +
VIII YNCH0008W RUF5-2 ncRNA gene 214407..215116 +
VIII YNCH0009C tF(GAA)H1 tRNA gene 237848..237939 -
VIII YNCH0010C tF(GAA)H2 tRNA gene 358478..358569 -
VIII YNCH0011W SUT169 ncRNA gene 378254..379237 +
VIII YNCH0012W SNR32 snR32 snoRNA gene 381540..381727 +
VIII YNCH0013C SUF8 tP(UGG)H tRNA gene 388893..388995 -
VIII YNCH0014W SNR71 snR71 snoRNA gene 411228..411317 +
VIII YNCH0015W tT(UGU)H tRNA gene 466990..467061 +
VIII YNCH0016C tV(CAC)H tRNA gene 475706..475778 -
IX YNCI0001W SNR68 snR68 snoRNA gene 97111..97246 +
IX YNCI0002W tT(AGU)I1 tRNA gene 175031..175103 +
IX YNCI0003C tI(AAU)I1 tRNA gene 183440..183513 -
IX YNCI0004W tE(CUC)I tRNA gene 197592..197663 +
IX YNCI0005W tI(AAU)I2 tRNA gene 210665..210738 +
IX YNCI0006W SUP17 tS(UGA)I tRNA gene 248850..248931 +
IX YNCI0007C tK(CUU)I tRNA gene 300228..300300 -
IX YNCI0008C tD(GUC)I1 tRNA gene 324303..324374 -
IX YNCI0009W tT(AGU)I2 tRNA gene 325748..325820 +
IX YNCI0010C tD(GUC)I2 tRNA gene 336349..336420 -
IX YNCI0011W tE(UUC)I tRNA gene 370417..370488 +
IX YNCI0012 ICR1 ncRNA gene 393884..397082 -
IX YNCI0013W PWR1 ncRNA gene 395999..396939 +
X YNCJ0001C tT(AGU)J tRNA gene 59100..59172 -
X YNCJ0002C tE(UUC)J tRNA gene 115939..116010 -
X YNCJ0003C SNR128 snR128 snoRNA gene 139566..139691 -
X YNCJ0004C SNR190 snR190 snoRNA gene 139761..139950 -
X YNCJ0005C tA(AGC)J tRNA gene 197313..197385 -
X YNCJ0006W tD(GUC)J1 tRNA gene 204735..204806 +
X YNCJ0007C SNR37 snR37 snoRNA gene 228094..228479 -
X YNCJ0008W tR(ACG)J tRNA gene 233939..234011 +
X YNCJ0009C SNR60 snR60 snoRNA gene 349130..349233 -
X YNCJ0010W SUP7 tY(GUA)J1 tRNA gene 354244..354332 +
X YNCJ0011W tR(UCU)J1 tRNA gene 355374..355445 +
X YNCJ0012W tD(GUC)J2 tRNA gene 355456..355527 +
X YNCJ0013C tD(GUC)J3 tRNA gene 374424..374495 -
X YNCJ0014C tR(UCU)J2 tRNA gene 374506..374577 -
X YNCJ0015W tV(AAC)J tRNA gene 378360..378433 +
X YNCJ0016C EMT5 tM(CAU)J1 tRNA gene 391043..391115 -
X YNCJ0017C tG(GCC)J1 tRNA gene 396726..396796 -
X YNCJ0018W tK(CUU)J tRNA gene 414966..415038 +
X YNCJ0019C tW(CCA)J tRNA gene 415931..416036 -
X YNCJ0020W EMT3 tM(CAU)J2 tRNA gene 422937..423009 +
X YNCJ0021C SUP51 tL(UAA)J tRNA gene 424432..424515 -
X YNCJ0022C IMT3 tM(CAU)J3 tRNA gene 517813..517884 -
X YNCJ0023C tS(AGA)J tRNA gene 524012..524093 -
X YNCJ0024W SUF23 tG(GCC)J2 tRNA gene 531828..531898 +
X YNCJ0025W HSX1 tR(CCU)J tRNA gene 538555..538626 +
X YNCJ0026W tD(GUC)J4 tRNA gene 541508..541579 +
X YNCJ0027C SUP4 tY(GUA)J2 tRNA gene 542956..543044 -
X YNCJ0028C IRT1 ncRNA gene 605936..607424 -
X YNCJ0029W tL(UAG)J tRNA gene 617919..618019 +
X YNCJ0030W SNR3 snR3 snoRNA gene 663749..663942 +
XI YNCK0001W SNR64 snR64 snoRNA gene 38811..38911 +
XI YNCK0002C TRT2 tT(CGU)K tRNA gene 46735..46806 -
XI YNCK0003W tN(GUU)K tRNA gene 74624..74697 +
XI YNCK0004W tL(UAA)K tRNA gene 84208..84291 +
XI YNCK0005C tE(UUC)K tRNA gene 141018..141089 -
XI YNCK0006C tR(UCU)K tRNA gene 162487..162558 -
XI YNCK0007W tK(CUU)K tRNA gene 202999..203071 +
XI YNCK0008W tA(AGC)K1 tRNA gene 219895..219967 +
XI YNCK0009W SNR38 snR38 snoRNA gene 283185..283279 +
XI YNCK0010W tW(CCA)K tRNA gene 302918..303023 +
XI YNCK0011C tV(AAC)K1 tRNA gene 308144..308217 -
XI YNCK0012C tH(GUG)K tRNA gene 313401..313472 -
XI YNCK0013W SNR69 snR69 snoRNA gene 364776..364876 +
XI YNCK0014W tV(AAC)K2 tRNA gene 379680..379753 +
XI YNCK0015C SNR87 snR87 snoRNA gene 431030..431138 -
XI YNCK0016W tL(CAA)K tRNA gene 458557..458670 +
XI YNCK0017W tR(ACG)K tRNA gene 490968..491040 +
XI YNCK0018C tD(GUC)K tRNA gene 513332..513403 -
XI YNCK0019W tA(AGC)K2 tRNA gene 517988..518060 +
XI YNCK0020C SNR42 snR42 snoRNA gene 559016..559366 -
XI YNCK0021W tK(UUU)K tRNA gene 578965..579060 +
XII YNCL0001W tP(UGG)L tRNA gene 92548..92650 +
XII YNCL0002C tS(AGA)L tRNA gene 167944..168025 -
XII YNCL0003W SNR30 snR30 snoRNA gene 198784..199389 +
XII YNCL0004C tA(UGC)L tRNA gene 214883..214955 -
XII YNCL0005C SNR79 snR79 snoRNA gene 348427..348510 -
XII YNCL0006W SNR6 snR6 snRNA gene 366235..366346 +
XII YNCL0007W tR(ACG)L tRNA gene 374355..374427 +
XII YNCL0008W tD(GUC)L1 tRNA gene 427132..427203 +
XII YNCL0009C tQ(UUG)L tRNA gene 448650..448721 -
XII YNCL0010C RDN37-1 rRNA gene 451575..458432 -
XII YNCL0011C ETS2-1 rRNA gene 451575..451785 -
XII YNCL0012C RDN25-1 rRNA gene 451786..455181 -
XII YNCL0013C ITS2-1 rRNA gene 455182..455413 -
XII YNCL0014C RDN58-1 rRNA gene 455414..455571 -
XII YNCL0015C ITS1-1 rRNA gene 455572..455932 -
XII YNCL0016C RDN18-1 rRNA gene 455933..457732 -
XII YNCL0017C ETS1-1 rRNA gene 457733..458432 -
XII YNCL0018W RDN5-1 rRNA gene 459676..459796 +
XII YNCL0019C ETS2-2 rRNA gene 460712..460922 -
XII YNCL0020C RDN37-2 rRNA gene 460712..467569 -
XII YNCL0021C RDN25-2 rRNA gene 460923..464318 -
XII YNCL0022C ITS2-2 rRNA gene 464319..464550 -
XII YNCL0023C RDN58-2 rRNA gene 464551..464708 -
XII YNCL0024C ITS1-2 rRNA gene 464709..465069 -
XII YNCL0025C RDN18-2 rRNA gene 465070..466869 -
XII YNCL0026C ETS1-2 rRNA gene 466870..467569 -
XII YNCL0027W RDN5-2 rRNA gene 468813..468931 +
XII YNCL0028W RDN5-3 rRNA gene 472465..472583 +
XII YNCL0029W RDN5-4 rRNA gene 482045..482163 +
XII YNCL0030W RDN5-5 rRNA gene 485697..485815 +
XII YNCL0031W RDN5-6 rRNA gene 489349..489469 +
XII YNCL0032C tL(UAG)L1 tRNA gene 592519..592619 -
XII YNCL0033C tI(UAU)L tRNA gene 605300..605432 -
XII YNCL0034W tL(CAA)L tRNA gene 628383..628497 +
XII YNCL0035C tA(AGC)L tRNA gene 656934..657006 -
XII YNCL0036C tV(AAC)L tRNA gene 687859..687932 -
XII YNCL0037W tL(UAG)L2 tRNA gene 732090..732190 +
XII YNCL0038W tI(AAU)L1 tRNA gene 734802..734875 +
XII YNCL0039W tX(XXX)L tRNA gene 784354..784453 +
XII YNCL0040W tD(GUC)L2 tRNA gene 793918..793989 +
XII YNCL0041C SNR61 snR61 snoRNA gene 794486..794575 -
XII YNCL0042C SNR55 snR55 snoRNA gene 794697..794794 -
XII YNCL0043C SNR57 snR57 snoRNA gene 794937..795024 -
XII YNCL0044W tE(UUC)L tRNA gene 797178..797249 +
XII YNCL0045W TRR4 tR(CCG)L tRNA gene 818609..818680 +
XII YNCL0046W SNR44 snR44 snoRNA gene 856710..856920 +
XII YNCL0047W tK(UUU)L tRNA gene 875376..875471 +
XII YNCL0048W SNR34 snR34 snoRNA gene 899180..899382 +
XII YNCL0049C tL(UAA)L tRNA gene 962972..963055 -
XII YNCL0050C tN(GUU)L tRNA gene 975983..976056 -
XII YNCL0051C tI(AAU)L2 tRNA gene 1052071..1052144 -
XIII YNCM0001W PHO84 lncRNA ncRNA gene 23564..26578 +
XIII YNCM0002C SNR85 snR85 snoRNA gene 67768..67938 -
XIII YNCM0003W ZOD1 ncRNA gene 91970..92027 +
XIII YNCM0004C tR(UCU)M2 tRNA gene 131825..131896 -
XIII YNCM0005C SNR54 snR54 snoRNA gene 163535..163620 -
XIII YNCM0006W SUP5 tY(GUA)M1 tRNA gene 168795..168883 +
XIII YNCM0007C tG(GCC)M tRNA gene 183898..183968 -
XIII YNCM0008C SUF7 tP(UGG)M tRNA gene 196068..196170 -
XIII YNCM0009C tS(AGA)M tRNA gene 259158..259239 -
XIII YNCM0010W tE(UUC)M tRNA gene 290801..290872 +
XIII YNCM0011W SNR78 snR78 snoRNA gene 297278..297364 +
XIII YNCM0012W SNR77 snR77 snoRNA gene 297506..297593 +
XIII YNCM0013W SNR76 snR76 snoRNA gene 297725..297833 +
XIII YNCM0014W SNR75 snR75 snoRNA gene 297918..298006 +
XIII YNCM0015W SNR74 snR74 snoRNA gene 298138..298225 +
XIII YNCM0016W SNR73 snR73 snoRNA gene 298307..298412 +
XIII YNCM0017W SNR72 snR72 snoRNA gene 298554..298651 +
XIII YNCM0018C tA(AGC)M1 tRNA gene 321147..321219 -
XIII YNCM0019W tF(GAA)M tRNA gene 352280..352370 +
XIII YNCM0020W tH(GUG)M tRNA gene 363064..363135 +
XIII YNCM0021C tV(AAC)M1 tRNA gene 372445..372518 -
XIII YNCM0022C tW(CCA)M tRNA gene 379303..379408 -
XIII YNCM0023C tV(AAC)M2 tRNA gene 420588..420661 -
XIII YNCM0024W tD(GUC)M tRNA gene 463554..463625 +
XIII YNCM0025C tK(CUU)M tRNA gene 480621..480693 -
XIII YNCM0026C SNR24 snR24 snoRNA gene 499984..500072 -
XIII YNCM0027W tL(CAA)M tRNA gene 504895..505008 +
XIII YNCM0028C EMT4 tM(CAU)M tRNA gene 572883..572955 -
XIII YNCM0029C tV(AAC)M3 tRNA gene 586636..586709 -
XIII YNCM0030W SNR83 snR83 snoRNA gene 626349..626654 +
XIII YNCM0031W SNR11 snR11 snoRNA gene 652275..652532 +
XIII YNCM0032C RNA170 ncRNA gene 667288..667456 -
XIII YNCM0033C tR(UCU)M1 tRNA gene 747892..747963 -
XIII YNCM0034C SNR86 snR86 snoRNA gene 762110..763113 -
XIII YNCM0035C tA(AGC)M2 tRNA gene 768369..768441 -
XIII YNCM0036C CDC65 tQ(CUG)M tRNA gene 808246..808317 -
XIII YNCM0037W SUP8 tY(GUA)M2 tRNA gene 837928..838016 +
XIV YNCN0001W SNR40 snR40 snoRNA gene 89210..89306 +
XIV YNCN0002C SUF6 tG(UCC)N tRNA gene 96241..96312 -
XIV YNCN0003W tN(GUU)N1 tRNA gene 102716..102789 +
XIV YNCN0004W tT(AGU)N1 tRNA gene 104805..104877 +
XIV YNCN0005C SNR19 snR19 snRNA gene 230105..230672 -
XIV YNCN0006W tF(GAA)N tRNA gene 374869..374959 +
XIV YNCN0007W tL(CAA)N tRNA gene 443006..443119 +
XIV YNCN0008C tD(GUC)N tRNA gene 519099..519169 -
XIV YNCN0009W tP(UGG)N1 tRNA gene 547094..547196 +
XIV YNCN0010C tT(AGU)N2 tRNA gene 560693..560765 -
XIV YNCN0011W tP(UGG)N2 tRNA gene 568115..568217 +
XIV YNCN0012C tI(AAU)N1 tRNA gene 569867..569940 -
XIV YNCN0013W NME1 snoRNA gene 585587..585926 +
XIV YNCN0014W SNR66 snR66 snoRNA gene 586090..586175 +
XIV YNCN0015W tI(AAU)N2 tRNA gene 602312..602385 +
XIV YNCN0016C SUF10 tP(AGG)N tRNA gene 631846..631917 -
XIV YNCN0017W tN(GUU)N2 tRNA gene 632599..632672 +
XIV YNCN0018W SNR49 snR49 snoRNA gene 716120..716284 +
XIV YNCN0019C SNR191 snR191 snoRNA gene 721938..722211 -
XIV YNCN0020C tL(UAA)N tRNA gene 726134..726217 -
XV YNCO0001C SUF1 tG(UCC)O tRNA gene 110962..111033 -
XV YNCO0002W tT(AGU)O1 tRNA gene 113802..113874 +
XV YNCO0003C SNR58 snR58 snoRNA gene 136088..136183 -
XV YNCO0004C tG(GCC)O1 tRNA gene 226611..226681 -
XV YNCO0005W tN(GUU)O1 tRNA gene 228331..228404 +
XV YNCO0006W SNR81 snR81 snoRNA gene 234346..234546 +
XV YNCO0007W SNR50 snR50 snoRNA gene 259489..259578 +
XV YNCO0008W tS(GCU)O tRNA gene 274673..274773 +
XV YNCO0009W SUF17 tG(GCC)O2 tRNA gene 282164..282234 +
XV YNCO0010W SUP3 tY(GUA)O tRNA gene 288192..288280 +
XV YNCO0011W tP(UGG)O1 tRNA gene 301097..301198 +
XV YNCO0012C tR(ACG)O tRNA gene 340299..340371 -
XV YNCO0013C tT(AGU)O2 tRNA gene 354041..354113 -
XV YNCO0014C SNR9 snR9 snoRNA gene 407948..408134 -
XV YNCO0015C SNR62 snR62 snoRNA gene 409765..409864 -
XV YNCO0016W tK(UUU)O tRNA gene 438643..438738 +
XV YNCO0017W SUF11 tP(UGG)O2 tRNA gene 464450..464551 +
XV YNCO0018W tN(GUU)O2 tRNA gene 487439..487512 +
XV YNCO0019W tD(GUC)O tRNA gene 571958..572029 +
XV YNCO0020C SUF5 tG(CCC)O tRNA gene 594354..594425 -
XV YNCO0021C tV(AAC)O tRNA gene 663812..663885 -
XV YNCO0022C SNR36 snR36 snoRNA gene 680685..680866 -
XV YNCO0023W IMT1 tM(CAU)O1 tRNA gene 710201..710272 +
XV YNCO0024C SNR35 snR35 snoRNA gene 759326..759529 -
XV YNCO0025W SNR17A snR17a snoRNA gene 780107..780596 +
XV YNCO0026W SNR8 snR8 snoRNA gene 832332..832521 +
XV YNCO0027C SNR31 snR31 snoRNA gene 841958..842182 -
XV YNCO0028W SNR5 snR5 snoRNA gene 842403..842606 +
XV YNCO0029C tA(UGC)O tRNA gene 854187..854259 -
XV YNCO0030W EMT2 tM(CAU)O2 tRNA gene 976421..976493 +
XV YNCO0031W tP(UGG)O3 tRNA gene 980683..980787 +
XVI YNCP0001C tW(CCA)P tRNA gene 56169..56274 -
XVI YNCP0002W GAL4 lncRNA ncRNA gene 79562..82648 +
XVI YNCP0003W SNR59 snR59 snoRNA gene 173827..173904 +
XVI YNCP0004C tE(UUC)P tRNA gene 210192..210263 -
XVI YNCP0005C SNR17B snR17b snoRNA gene 281056..281517 -
XVI YNCP0006C IMT2 tM(CAU)P tRNA gene 338848..338919 -
XVI YNCP0007C tC(GCA)P1 tRNA gene 435893..435964 -
XVI YNCP0008C tF(GAA)P1 tRNA gene 560198..560289 -
XVI YNCP0009W tG(GCC)P1 tRNA gene 572269..572339 +
XVI YNCP0010W tK(CUU)P tRNA gene 582062..582134 +
XVI YNCP0011C tF(GAA)P2 tRNA gene 622540..622631 -
XVI YNCP0012W SUP16 tS(UGA)P tRNA gene 689565..689646 +
XVI YNCP0013C SNR51 snR51 snoRNA gene 718700..718806 -
XVI YNCP0014C SNR70 snR70 snoRNA gene 718887..719050 -
XVI YNCP0015C SNR41 snR41 snoRNA gene 719148..719242 -
XVI YNCP0016W tT(UGU)P tRNA gene 744284..744355 +
XVI YNCP0017C tK(UUU)P tRNA gene 769207..769302 -
XVI YNCP0018C tC(GCA)P2 tRNA gene 775765..775836 -
XVI YNCP0019W tN(GUU)P tRNA gene 810676..810749 +
XVI YNCP0020W tI(AAU)P1 tRNA gene 819529..819602 +
XVI YNCP0021W SNR45 snR45 snoRNA gene 821732..821903 +
XVI YNCP0022W tA(AGC)P tRNA gene 856902..856974 +
XVI YNCP0023W tG(GCC)P2 tRNA gene 860379..860449 +
XVI YNCP0024C tI(AAU)P2 tRNA gene 880296..880369 -
Mito YNCQ0001W tP(UGG)Q tRNA gene 731..802 +
Mito YNCQ0002W 15S_RRNA Q0020 rRNA gene 6546..8194 +
Mito YNCQ0003W tW(UCA)Q tRNA gene 9374..9447 +
Mito YNCQ0004W tE(UUC)Q tRNA gene 35373..35444 +
Mito YNCQ0005W tS(UGA)Q2 tRNA gene 48201..48290 +
Mito YNCQ0006W 21S_RRNA Q0158 rRNA gene 58009..62447 +
Mito YNCQ0007W tT(UGU)Q1 tRNA gene 63862..63937 +
Mito YNCQ0008W tC(GCA)Q tRNA gene 64415..64490 +
Mito YNCQ0009W tH(GUG)Q tRNA gene 64596..64670 +
Mito YNCQ0010W tL(UAA)Q tRNA gene 66095..66179 +
Mito YNCQ0011W tQ(UUG)Q tRNA gene 66210..66285 +
Mito YNCQ0012W tK(UUU)Q tRNA gene 67061..67134 +
Mito YNCQ0013W tR(UCU)Q1 tRNA gene 67309..67381 +
Mito YNCQ0014W tG(UCC)Q tRNA gene 67468..67542 +
Mito YNCQ0015W tD(GUC)Q tRNA gene 68322..68396 +
Mito YNCQ0016W tS(GCU)Q1 tRNA gene 69203..69288 +
Mito YNCQ0017W tR(ACG)Q2 tRNA gene 69289..69362 +
Mito YNCQ0018W tA(UGC)Q tRNA gene 69846..69921 +
Mito YNCQ0019W tI(GAU)Q tRNA gene 70162..70237 +
Mito YNCQ0020W tY(GUA)Q tRNA gene 70824..70907 +
Mito YNCQ0021W tN(GUU)Q tRNA gene 71433..71503 +
Mito YNCQ0022W tM(CAU)Q1 tRNA gene 72630..72705 +
Mito YNCQ0023W tF(GAA)Q tRNA gene 77431..77505 +
Mito YNCQ0024C tT(UAG)Q2 tRNA gene 78089..78162 -
Mito YNCQ0025W tV(UAC)Q tRNA gene 78533..78608 +
Mito YNCQ0026W tM(CAU)Q2 tRNA gene 85035..85112 +
Mito YNCQ0027W RPM1 Q0285 ncRNA gene 85295..85777 +
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