Difference between revisions of "Details of 2021 Reference Genome Annotation Update R64.3"
| Line 10: | Line 10: | ||
|II | |II | ||
|YNCB0008W aka GAL10-ncRNA | |YNCB0008W aka GAL10-ncRNA | ||
| − | |New | + | |New ncRNA |
|PMID:19061643, PMID:19407817, PMID:22226051 | |PMID:19061643, PMID:19407817, PMID:22226051 | ||
|- | |- | ||
|II | |II | ||
|YNCB0014W aka TBRT/XUT_2F-154 | |YNCB0014W aka TBRT/XUT_2F-154 | ||
| − | |New | + | |New ncRNA |
|PMID:32081726 | |PMID:32081726 | ||
|- | |- | ||
| Line 40: | Line 40: | ||
|PMID: 25781884 | |PMID: 25781884 | ||
|- | |- | ||
| − | | | + | |VII |
| − | | | + | |ROK1/YGL171W |
| − | | | + | |Added two new uORFs |
| + | uORF1: 182286..182407 | ||
| + | uORF2: 182291..182329 | ||
| + | |PMID:20969870 | ||
|- | |- | ||
| − | | | + | |VIII |
| − | | | + | |YHR052C-B |
| − | | | + | |New ORF |
| + | |PMID:29897761 | ||
|- | |- | ||
| − | | | + | |VIII |
| − | | | + | |YHR054C-B |
| − | | | + | |New ORF |
| + | |PMID:29897761 | ||
|- | |- | ||
| − | | | + | |VIII |
| − | | | + | |SUT169/YNCH0011W |
| − | | | + | |New ncRNA |
| + | |PMID:19169243, PMID:22226051, PMID:27292640, PMID:28977638 | ||
|- | |- | ||
| − | | | + | |X |
| − | | | + | |YJR107C-A |
| − | | | + | |New ORF |
| + | |PMID:26554900, PMID:29897761 | ||
|- | |- | ||
| − | | | + | |X |
| − | | | + | |YJR012C |
| − | | | + | |Moved start to Met76 |
| + | old coordinates: 459795..460418 Crick | ||
| + | new coordinates: 459795..460193 Crick | ||
| + | |PMID:29632376 | ||
|- | |- | ||
| | | | ||
Revision as of 15:38, 22 April 2021
The S. cerevisiae strain S288C reference genome annotation was updated in its first major update since 2014. The new genome annotation is release R64.3.1, dated 2021-04-22. Note that the genome sequence itself was not altered in any way.
| Chr | Feature | Description of change | Reference |
|---|---|---|---|
| II | YNCB0008W aka GAL10-ncRNA | New ncRNA | PMID:19061643, PMID:19407817, PMID:22226051 |
| II | YNCB0014W aka TBRT/XUT_2F-154 | New ncRNA | PMID:32081726 |
| III | RE/RE301 | New recombination enhancer | PMID:8861911 |
| V | YELWdelta27 | New Ty1 LTR | PMID:29320491 |
| V | HPA3/YEL066W | Moved translation start to Met19
old coordinates: 26667..27206 new coordinates: 26721..27206 |
PMID: 23775086 |
| VII | OTO1/YGR227C-A | New ORF | PMID: 25781884 |
| VII | ROK1/YGL171W | Added two new uORFs
uORF1: 182286..182407 uORF2: 182291..182329 |
PMID:20969870 |
| VIII | YHR052C-B | New ORF | PMID:29897761 |
| VIII | YHR054C-B | New ORF | PMID:29897761 |
| VIII | SUT169/YNCH0011W | New ncRNA | PMID:19169243, PMID:22226051, PMID:27292640, PMID:28977638 |
| X | YJR107C-A | New ORF | PMID:26554900, PMID:29897761 |
| X | YJR012C | Moved start to Met76
old coordinates: 459795..460418 Crick new coordinates: 459795..460193 Crick |
PMID:29632376 |
