Difference between revisions of "Systematic Sequencing Table"

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[http://www.yeastgenome.org/contig/Chromosome_I/overview I]  
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[https://www.yeastgenome.org/contig/Chromosome_I I]  
 
<br>[http://www.yeastgenome.org/reference/S000039624/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/?term=7731988 PubMed], [[media:Bussey_chr_I.pdf | PDF]]
 
<br>[http://www.yeastgenome.org/reference/S000039624/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/?term=7731988 PubMed], [[media:Bussey_chr_I.pdf | PDF]]
 
| [https://www-aws.yeastgenome.org/colleague/Howard_Bussey_741 H. Bussey], Montreal, Canada
 
| [https://www-aws.yeastgenome.org/colleague/Howard_Bussey_741 H. Bussey], Montreal, Canada
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|-
 
|  
 
|  
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[http://www.yeastgenome.org/contig/Chromosome_II/overview II]  
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[https://www.yeastgenome.org/contig/Chromosome_II II]  
 
<br>[http://www.yeastgenome.org/reference/S000057497/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/7813418 PubMed], [[media:Feldmann_chr_II.pdf | PDF]]
 
<br>[http://www.yeastgenome.org/reference/S000057497/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/7813418 PubMed], [[media:Feldmann_chr_II.pdf | PDF]]
 
| [https://www-aws.yeastgenome.org/colleague/Horst_Feldmann_1721 H. Feldmann], Muenchen, Germany
 
| [https://www-aws.yeastgenome.org/colleague/Horst_Feldmann_1721 H. Feldmann], Muenchen, Germany
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|-
 
|  
 
|  
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[http://www.yeastgenome.org/contig/Chromosome_III/overview III]  
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[https://www.yeastgenome.org/contig/Chromosome_III III]  
 
<br>[http://www.yeastgenome.org/reference/S000060078/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/1574125 PubMed], [[media:Oliver_chr_III.pdf | PDF]]
 
<br>[http://www.yeastgenome.org/reference/S000060078/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/1574125 PubMed], [[media:Oliver_chr_III.pdf | PDF]]
 
| [https://www-aws.yeastgenome.org/colleague/Stephen_G._Oliver_4376 S.G. Oliver], Manchester, England
 
| [https://www-aws.yeastgenome.org/colleague/Stephen_G._Oliver_4376 S.G. Oliver], Manchester, England
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|  
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[http://www.yeastgenome.org/contig/Chromosome_IV/overview IV]
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[https://www.yeastgenome.org/contig/Chromosome_IV IV]
 
<br>[http://www.yeastgenome.org/reference/S000060079/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169867 PubMed], [[media:Jacq_chr_IV.pdf | PDF]]
 
<br>[http://www.yeastgenome.org/reference/S000060079/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169867 PubMed], [[media:Jacq_chr_IV.pdf | PDF]]
 
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Line 57: Line 57:
 
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|  
 
|  
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[http://www.yeastgenome.org/contig/Chromosome_V/overview V]
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[https://www.yeastgenome.org/contig/Chromosome_V V]
 
<br>[http://www.yeastgenome.org/reference/S000058121/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169868 PubMed], [[media:Dietrich_chr_V.pdf | PDF]]
 
<br>[http://www.yeastgenome.org/reference/S000058121/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169868 PubMed], [[media:Dietrich_chr_V.pdf | PDF]]
 
| [https://www-aws.yeastgenome.org/colleague/Ronald_W._Davis_1262 R. Davis], Stanford, California, USA
 
| [https://www-aws.yeastgenome.org/colleague/Ronald_W._Davis_1262 R. Davis], Stanford, California, USA
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|  
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[http://www.yeastgenome.org/contig/Chromosome_VI/overview VI]
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[https://www.yeastgenome.org/contig/Chromosome_VI VI]
 
<br>[http://www.yeastgenome.org/reference/S000057428/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/7670463 PubMed], [[media:Murakami_chr_VI.pdf | PDF]]
 
<br>[http://www.yeastgenome.org/reference/S000057428/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/7670463 PubMed], [[media:Murakami_chr_VI.pdf | PDF]]
 
| [https://www-aws.yeastgenome.org/colleague/Yasufumi_Murakami_4124 Y. Murakami], Tokyo, Japan
 
| [https://www-aws.yeastgenome.org/colleague/Yasufumi_Murakami_4124 Y. Murakami], Tokyo, Japan
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|-
 
|  
 
|  
−
[http://www.yeastgenome.org/contig/Chromosome_VII/overview VII]  
+
[https://www.yeastgenome.org/contig/Chromosome_VII VII]  
 
<br>[http://www.yeastgenome.org/reference/S000060080/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169869 PubMed], [[media:Tettelin_chr_VII.pdf | PDF]]
 
<br>[http://www.yeastgenome.org/reference/S000060080/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169869 PubMed], [[media:Tettelin_chr_VII.pdf | PDF]]
 
| [https://www-aws.yeastgenome.org/colleague/Herve_Tettelin_9854 H. Tettelin], Louvain-la-Neuve, Belgium
 
| [https://www-aws.yeastgenome.org/colleague/Herve_Tettelin_9854 H. Tettelin], Louvain-la-Neuve, Belgium
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|-
 
|  
 
|  
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[http://www.yeastgenome.org/contig/Chromosome_VIII/overview VIII]  
+
[https://www.yeastgenome.org/contig/Chromosome_VIII VIII]  
 
<br>[http://www.yeastgenome.org/reference/S000057599/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/8091229 PubMed], [[media:Johnston_chr_VIII.pdf | PDF]]
 
<br>[http://www.yeastgenome.org/reference/S000057599/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/8091229 PubMed], [[media:Johnston_chr_VIII.pdf | PDF]]
 
| [https://www-aws.yeastgenome.org/colleague/Mark_Johnston_2827 M. Johnston], St. Louis, Missouri, USA
 
| [https://www-aws.yeastgenome.org/colleague/Mark_Johnston_2827 M. Johnston], St. Louis, Missouri, USA
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|-
 
|
 
|
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[http://www.yeastgenome.org/contig/Chromosome_IX/overview IX]   
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[https://www.yeastgenome.org/contig/Chromosome_IX IX]   
 
<br>[http://www.yeastgenome.org/reference/S000060081/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169870 PubMed], [[media:Barrell_chr_IX.pdf | PDF]]
 
<br>[http://www.yeastgenome.org/reference/S000060081/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169870 PubMed], [[media:Barrell_chr_IX.pdf | PDF]]
 
| [https://www-aws.yeastgenome.org/colleague/Barclay_G._Barrell_296 B. Barrell], Cambridge, England
 
| [https://www-aws.yeastgenome.org/colleague/Barclay_G._Barrell_296 B. Barrell], Cambridge, England
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[http://www.yeastgenome.org/contig/Chromosome_X/overview X]   
+
[https://www.yeastgenome.org/contig/Chromosome_X X]   
 
<br>[http://www.yeastgenome.org/reference/S000060082/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/8641269 PubMed], [[media:Galibert_chr_X.pdf | PDF]]
 
<br>[http://www.yeastgenome.org/reference/S000060082/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/8641269 PubMed], [[media:Galibert_chr_X.pdf | PDF]]
 
| [https://www-aws.yeastgenome.org/colleague/Francis_Galibert_1906 F. Galibert], Rouen, France
 
| [https://www-aws.yeastgenome.org/colleague/Francis_Galibert_1906 F. Galibert], Rouen, France
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|-
 
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[http://www.yeastgenome.org/contig/Chromosome_XI/overview XI]   
+
[https://www.yeastgenome.org/contig/Chromosome_XI XI]   
 
<br>[http://www.yeastgenome.org/reference/S000057636/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/8196765 PubMed], [[media:Dujon_chr_XI.pdf | PDF]]
 
<br>[http://www.yeastgenome.org/reference/S000057636/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/8196765 PubMed], [[media:Dujon_chr_XI.pdf | PDF]]
 
| [https://www-aws.yeastgenome.org/colleague/Bernard_Dujon_1514 B. Dujon], Paris, France
 
| [https://www-aws.yeastgenome.org/colleague/Bernard_Dujon_1514 B. Dujon], Paris, France
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<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr11.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr11.fsa Download FASTA]
 
|-
 
|-
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| [http://www.yeastgenome.org/contig/Chromosome_XII/overview XII]  
+
| [https://www.yeastgenome.org/contig/Chromosome_XII XII]  
 
[http://www.yeastgenome.org/reference/S000060083/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169871 PubMed], [[media:Johnston_chr_XII.pdf | PDF]]
 
[http://www.yeastgenome.org/reference/S000060083/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169871 PubMed], [[media:Johnston_chr_XII.pdf | PDF]]
 
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Line 145: Line 145:
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr12.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr12.fsa Download FASTA]
 
|-
 
|-
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|[http://www.yeastgenome.org/contig/Chromosome_XIII/overview XIII]  
+
|[https://www.yeastgenome.org/contig/Chromosome_XIII XIII]  
 
[http://www.yeastgenome.org/reference/S000060084/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169872 PubMed], [[media:Barrell_chr_XIII.pdf | PDF]]
 
[http://www.yeastgenome.org/reference/S000060084/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169872 PubMed], [[media:Barrell_chr_XIII.pdf | PDF]]
 
| [https://www-aws.yeastgenome.org/colleague/Barclay_G._Barrell_296 B. Barrell], Cambridge, England
 
| [https://www-aws.yeastgenome.org/colleague/Barclay_G._Barrell_296 B. Barrell], Cambridge, England
Line 155: Line 155:
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr13.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr13.fsa Download FASTA]
 
|-
 
|-
−
| [http://www.yeastgenome.org/contig/Chromosome_XIV/overview XIV]   
+
| [https://www.yeastgenome.org/contig/Chromosome_XIV XIV]   
 
[http://www.yeastgenome.org/reference/S000060085/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169873 PubMed], [[media:Philippsen_chr_XIV.pdf | PDF]]
 
[http://www.yeastgenome.org/reference/S000060085/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169873 PubMed], [[media:Philippsen_chr_XIV.pdf | PDF]]
 
| [https://www-aws.yeastgenome.org/colleague/Peter_Philippsen_4609 P. Philippsen, Basel], Switzerland
 
| [https://www-aws.yeastgenome.org/colleague/Peter_Philippsen_4609 P. Philippsen, Basel], Switzerland
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<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr14.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr14.fsa Download FASTA]
 
|-
 
|-
−
| [http://www.yeastgenome.org/contig/Chromosome_XV/overview XV]   
+
| [https://www.yeastgenome.org/contig/Chromosome_XV XV]   
 
[http://www.yeastgenome.org/reference/S000060298/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169874 PubMed], [[media:Dujon_chr_XV.pdf | PDF]]
 
[http://www.yeastgenome.org/reference/S000060298/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169874 PubMed], [[media:Dujon_chr_XV.pdf | PDF]]
 
| [https://www-aws.yeastgenome.org/colleague/Bernard_Dujon_1514 B. Dujon], Paris, France
 
| [https://www-aws.yeastgenome.org/colleague/Bernard_Dujon_1514 B. Dujon], Paris, France
Line 175: Line 175:
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr15.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr15.fsa Download FASTA]
 
|-
 
|-
−
| [http://www.yeastgenome.org/contig/Chromosome_XVI/overview XVI]   
+
| [https://www.yeastgenome.org/contig/Chromosome_XVI XVI]   
 
[http://www.yeastgenome.org/reference/S000045447/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169875 PubMed], [[media:Bussey_chr_XVI.pdf | PDF]]
 
[http://www.yeastgenome.org/reference/S000045447/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9169875 PubMed], [[media:Bussey_chr_XVI.pdf | PDF]]
 
|  
 
|  
Line 190: Line 190:
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr16.fsa Download FASTA]
 
<br>[http://downloads.yeastgenome.org/sequence/S288C_reference/NCBI_genome_source/chr16.fsa Download FASTA]
 
|-
 
|-
−
| [http://www.yeastgenome.org/contig/Chromosome_mito/overview Mitochondrial]
+
| [https://www.yeastgenome.org/contig/Chromosome_mito Mitochondrial]
 
[http://www.yeastgenome.org/reference/S000058438/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9872396 PubMed], [[media:Foury_chr_mito.pdf | PDF]]
 
[http://www.yeastgenome.org/reference/S000058438/overview SGD], [https://www.ncbi.nlm.nih.gov/pubmed/9872396 PubMed], [[media:Foury_chr_mito.pdf | PDF]]
 
| [https://www-aws.yeastgenome.org/colleague/Francoise_Foury_1817 Foury, Francoise], Unite de Biochimie Physiologique
 
| [https://www-aws.yeastgenome.org/colleague/Francoise_Foury_1817 Foury, Francoise], Unite de Biochimie Physiologique

Revision as of 10:34, 22 August 2017

Saccharomyces cerevisiae chromosome statistics and retrieval options

Chromosome Region & Reference DNA Coordinator Total Length S288c sub-strain(s) Retrieve

I
SGD, PubMed, PDF

H. Bussey, Montreal, Canada 230,218 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

II
SGD, PubMed, PDF

H. Feldmann, Muenchen, Germany 813,184 genuine strain S288C

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

III
SGD, PubMed, PDF

S.G. Oliver, Manchester, England 316,620 XJ24-24a, AB972, A364A, DC5

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

IV
SGD, PubMed, PDF

Telo to Cen: C. Jacq, Paris, France
Cen to 960K: B. Barrell, Cambridge, England
960K to 1110K: M. Johnston, St. Louis, Missouri, USA
1110K to Telo: R. Davis, Stanford, California, USA

1,531,933 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

V
SGD, PubMed, PDF

R. Davis, Stanford, California, USA 576,874 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

VI
SGD, PubMed, PDF

Y. Murakami, Tokyo, Japan 270,161 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

VII
SGD, PubMed, PDF

H. Tettelin, Louvain-la-Neuve, Belgium 1,090,940 FY1679

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

VIII
SGD, PubMed, PDF

M. Johnston, St. Louis, Missouri, USA 562,643 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

IX
SGD, PubMed, PDF

B. Barrell, Cambridge, England 439,888 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

X
SGD, PubMed, PDF

F. Galibert, Rouen, France 745,751 FY1679

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

XI
SGD, PubMed, PDF

B. Dujon, Paris, France 666,816 FY1679

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

XII

SGD, PubMed, PDF

Left: J. Hoheisel, Heidelberg, Germany
Right: M. Johnston, St. Louis, Missouri, USA

1,078,177 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

XIII

SGD, PubMed, PDF

B. Barrell, Cambridge, England 924,431 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

XIV

SGD, PubMed, PDF

P. Philippsen, Basel, Switzerland 784,333 FY1679, AB972

JBrowse Viewer
Gene/SequenceResources
Download FASTA

XV

SGD, PubMed, PDF

B. Dujon, Paris, France 1,091,291 FY1679

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

XVI

SGD, PubMed, PDF

Left 1: A. Goffeau, Louvain-la-Neuve, Belgium
Left 2: H. Bussey, Montreal, Canada
Left 2a: R. Davis, Stanford, California, USA
Right 1: B. Barrell, Cambridge, England
Right 2: M. Johnston, St. Louis, Missouri, USA

948,066 AB972

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

Mitochondrial

SGD, PubMed, PDF

Foury, Francoise, Unite de Biochimie Physiologique 85,779 FY1679

JBrowse Viewer
Gene/Sequence Resources
Download FASTA

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