Difference between revisions of "Seminal Yeast Literature"

From SGD-Wiki
Jump to: navigation, search
(→‎Sequencing Consortium Results of the Complete Genome)
 
(72 intermediate revisions by 5 users not shown)
Line 1: Line 1:
 +
__TOC__
 
=Classical Yeast Cell Biology, Early Maps, and Genome Surveys=
 
=Classical Yeast Cell Biology, Early Maps, and Genome Surveys=
  
−
* Ephrussi, B., Hottingeur, H., Tavlitski, J. (1949) Action de Tacriflavine sur les levures. II. Étude génétique du mutant "petite colonie". Ann Inst Pasteur 76:419-450.
+
* Ephrussi B, Hottingeur H and Tavlitski J. (1949) Action de l'acriflavine sur les levures. II. Étude génétique du mutant "petite colonie". Ann Inst Pasteur 76:419-50.
−
* Lindegren, C.C. (1949) The Yeast Cell: Its Genetics and Cytology. EducationPublishers Inc., St. Louis
+
* Lindegren CC. (1949) The Yeast Cell: Its Genetics and Cytology. Educational Publishers Inc, 18:2. [http://archive.org/stream/yeastcellitsgene00lind#page/n5/mode/2up Open Library]
−
* Pomper, S., Burkholder, P.R. (1949) Studies on the biochemical genetics of yeast. Proc Natl Acad Sci USA 35(8):456-464. [http://www.ncbi.nlm.nih.gov/pubmed/?term=16588920 PMID:16588920]
+
* Pomper S and Burkholder PR. (1949) Studies on the Biochemical Genetics of Yeast. Proc Natl Acad Sci USA 35(8):456-64. [http://www.ncbi.nlm.nih.gov/pubmed/?term=16588920 PMID:16588920]
−
* Reaume, S.E., Tatum, E.L. (1949) Spontaneous and nitrogen mustard-induced nutritional deficiencies in Saccharomyces cerevisiae. Arch Biochem 22(3):331-8. [http://www.ncbi.nlm.nih.gov/pubmed/?term=18134538 PMID:18134538]
+
* Reaume SE and Tatum EL. (1949) Spontaneous and nitrogen mustard-induced nutritional deficiencies in ''Saccharomyces cerevisiae''. Arch Biochem 22(3):331-8. [http://www.ncbi.nlm.nih.gov/pubmed/?term=18134538 PMID:18134538]
−
*Lindegren, C.C., Lindegren, G. (1951) Linkage relationships in Saccharomyces of genes controlling the fermentation of carbohydrates and the synthesis of vitamins, amino acids and nucleic acid components. Indian Phytopathol 4:11-20.
+
* Lindegren CC and Lindegren G. (1951) Linkage relationships in ''Saccharomyces'' of genes controlling the fermentation of carbohydrates and the synthesis of vitamins, amino acids and nucleic acid components. Indian Phytopathol 4:11-20.
−
*Roman, H., Hawthorne, D., Douglas, H. (1951) Polyploidy in yeast and its bearing on the occurrence of irregular genetic ratios. Proc Natl Acad Sci USA 37(2):79-84. [http://www.ncbi.nlm.nih.gov/pubmed/?term=14808168 PMID:14808168]
+
* Roman H, Hawthorne DC and Douglas HC. (1951) Polyploidy in yeast and its bearing on the occurrence of irregular genetic ratios. Proc Natl Acad Sci USA 37(2):79-84. [http://www.ncbi.nlm.nih.gov/pubmed/?term=14808168 PMID:14808168]
−
*Pomper, S. (1952) Purine-requiring and pyrimidine-requiring mutants of Saccharomyces cerevisiae. J Bacteriol 63(6):707-713. [http://www.ncbi.nlm.nih.gov/pubmed/?term=14938332 PMID:14938332]
+
* Pomper S. (1952) Purine-requiring and pyrimidine-requiring mutants of ''Saccharomyces cerevisiae''. J Bacteriol 63(6):707-13. [http://www.ncbi.nlm.nih.gov/pubmed/?term=14938332 PMID:14938332]
−
*Hawthorne, D.C. (1956) The genetics of galactose fermentation in Saccharomyces hybrids. Compt Rend Lab Carlsberg, Ser Physiol 26:149-160.
+
* Hawthorne DC. (1956) The genetics of galactose fermentation in ''Saccharomyces'' hybrids. Compt Rend Lab Carlsberg, Ser Physiol 26:149-160.
−
*Lindegren, C.C., Lindegren, G., Shult, E.E., Desborough, S. (1959) Chromosome maps of Saccharomyces. Nature 183(4664):800-2. [http://www.ncbi.nlm.nih.gov/pubmed/?term=13644197 PMID:13644197]
+
* Lindegren CC, Lindegren G, Shult EE and Desborough S. (1959) Chromosome maps of ''Saccharomyces''. Nature 183(4664):800-2. [http://www.ncbi.nlm.nih.gov/pubmed/?term=13644197 PMID:13644197]
 +
* Hawthorne DC and Mortimer RK. (1960) Chromosome Mapping in ''Saccharomyces'': Centromere-Linked Genes. Genetics 45(8):1085-110. [http://www.ncbi.nlm.nih.gov/pubmed/?term=17247984 PMID:17247984]
 +
* Hartwell LH. (1970) Genetic control of the cell-division cycle in yeast. I. Detection of mutants. Proc Natl Acad Sci USA 66(2):352-9. [http://www.ncbi.nlm.nih.gov/pubmed/?term=5271168 PMID:5271168]
 +
* Hartwell LH. (1971) Genetic control of the cell division cycle in yeast. II. Genes controlling DNA replication and its initiation. J Mol Biol 59(1):183-94. [http://www.ncbi.nlm.nih.gov/pubmed/?term=5283752 PMID: 5283752]
 +
* Culotti J. and Hartwell LH. (1971) Genetic control of the cell division cycle in yeast. 3. Seven genes controlling nuclear division. Exp Cell Res 67(2):389-401. [http://www.ncbi.nlm.nih.gov/pubmed/?term=5097524 PMID: 5097524]
 +
* Hartwell LH.  (1971) Genetic control of the cell division cycle in yeast. IV. Genes controlling bud emergence and cytokinesis. Exp Cell Res 69(2):265-76. [http://www.ncbi.nlm.nih.gov/pubmed/?term=4950437 PMID: 4950437]
 +
* Hartwell LH, Mortimer RK, Culotti J and Culotti M. (1973) Genetic Control of the Cell Division Cycle in Yeast: V. Genetic Analysis of cdc Mutants. Genetics 74(2):267-286. [http://www.ncbi.nlm.nih.gov/pubmed/?term=17248617 PMID: 17248617]
 +
* Hartwell LH, Culotti J, Pringle JR and Reid BJ. (1974) Genetic control of the cell division cycle in yeast. Science 183(4120):46-51.  [http://www.ncbi.nlm.nih.gov/pubmed/?term=4587263 PMID: 4587263]
 +
* Johnston GC, Pringle JR and Hartwell LH. (1977) Coordination of growth with cell division in the yeast Saccharomyces cerevisiae. Exp Cell Res 105(1):79-98. [http://www.ncbi.nlm.nih.gov/pubmed/?term=320023 PMID: 320023]
 +
* Novick P and Schekman R.  (1979) Secretion and cell-surface growth are blocked in a temperature-sensitive mutant of Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 76(4):1858-62. [http://www.ncbi.nlm.nih.gov/pubmed/?term=377286 PMID: 377286]
 +
* Novick P, Field C and Schekman R. (1980) Identification of 23 complementation groups required for post-translational events in the yeast secretory pathway. Cell 21(1):205-15.  [http://www.ncbi.nlm.nih.gov/pubmed/?term=6996832 PMID: 6996832]
 +
* Clarke L and Carbon J.  (1980) Isolation of a yeast centromere and construction of functional small circular chromosomes. Nature 287(5782):504-9. [http://www.ncbi.nlm.nih.gov/pubmed/?term=6999364 PMID: 6999364]
 +
* Mortimer RK and Schild D. (1980) Genetic map of ''Saccharomyces cerevisiae''. Microbiol Rev 44(4):519-71. [http://www.ncbi.nlm.nih.gov/pubmed/?term=7010111 PMID:7010111]
 +
* Novick P, Ferro S and Schekman R. (1981) Order of events in the yeast secretory pathway. Cell 25(2):461-9. [http://www.ncbi.nlm.nih.gov/pubmed/?term=7026045 PMID: 7026045]
 +
* Carlson M, Osmond BC and Botstein D.  (1981) Mutants of yeast defective in sucrose utilization. Genetics 98(1):25-40. [http://www.ncbi.nlm.nih.gov/pubmed/?term=7040163 PMID: 7040163]
 +
* Orr-Weaver TL, Szostak JW and Rothstein RJ. (1981) Yeast transformation: a model system for the study of recombination. Proc Natl Acad Sci U S A 78(10):6354-8. [http://www.ncbi.nlm.nih.gov/pubmed/?term=6273866 PMID:6273866]
 +
* Klapholz S and Esposito RE. (1982) Chromosomes XIV and XVII of ''Saccharomyces cerevisiae'' constitute a single linkage group. Mol Cell Biol 2(11):1399-409. [http://www.ncbi.nlm.nih.gov/pubmed/?term=6761582 PMID:6761582]
 +
* Carlson M and Botstein D. (1983) Organization of the SUC gene family in ''Saccharomyces''. Mol Cell Biol 3(3):351-9. [http://www.ncbi.nlm.nih.gov/pubmed/?term=6843548 PMID:6843548]
 +
* Hieter P, Pridmore D, Hegemann JH, Thomas M, Davis RW and Philippsen P. (1985) Functional selection and analysis of yeast centromeric DNA. Cell 42(3):913-21. [http://www.ncbi.nlm.nih.gov/pubmed/?term=2996783 PMID:2996783]
 +
*Olson MV, Dutchik JE, Graham MY, Brodeur GM, Helms C, Frank M, MacCollin M, Scheinman R and Frank T. (1986) Random-clone strategy for genomic restriction mapping in yeast. Proc Natl Acad Sci USA 83(20):7826-30. [http://www.ncbi.nlm.nih.gov/pubmed/?term=3463999 PMID:3463999]
 +
* Chow TH, Sollitti P and Marmur J. (1989) Structure of the multigene family of MAL loci in ''Saccharomyces''. Mol Gen Genet 217(1):60-9. [http://www.ncbi.nlm.nih.gov/pubmed/2549370 PMID:2549370]
 +
* Link AJ and Olson MV. (1991) Physical map of the ''Saccharomyces cerevisiae'' genome at 110-kilobase resolution. Genetics 127(4):681-98. [http://www.ncbi.nlm.nih.gov/pubmed/?term=2029969 PMID:2029969]
 +
* Percudani R, Pavesi A and Ottonello S. (1997) Transfer RNA gene redundancy and translational selection in ''Saccharomyces cerevisiae''. J Mol Biol 268(2):322-30. [http://www.ncbi.nlm.nih.gov/pubmed/?term=9159473 PMID:9159473]
 +
* Deshpande AM and Newlon CS. (1992) The ARS consensus sequence is required for chromosomal origin function in ''Saccharomyces cerevisiae''. Mol Cell Biol 12(10):4305-13. [http://www.ncbi.nlm.nih.gov/pubmed/?term=1406623 PMID:1406623]
 +
* Riles L, Dutchik JE, Baktha A, McCauley BK, Thayer EC, Leckie MP, Braden VV, Depke JE and Olson MV. (1993) Physical maps of the six smallest chromosomes of ''Saccharomyces cerevisiae'' at a resolution of 2.6 kilobase pairs. Genetics 134(1):81-150. [http://www.ncbi.nlm.nih.gov/pubmed/?term=8514151 PMID:8514151]
 +
* Hegemann JH and Fleig UN. (1993) The centromere of budding yeast. Bioessays 15(7):451-60. [http://www.ncbi.nlm.nih.gov/pubmed/?term=8379948 PMID:8379948]
 +
* Shirahige K, Iwasaki T, Rashid MB, Ogasawara N and Yoshikawa H. (1993) Location and characterization of autonomously replicating sequences from chromosome VI of ''Saccharomyces cerevisae''. Mol Cell Biol 13(8):5043-56. [http://www.ncbi.nlm.nih.gov/pubmed/?term=8336734 PMID:8336734]
 +
* Louis EJ, Naumova ES, Lee A, Naumov G and Haber JE. (1994) The chromosome end in yeast: its mosaic nature and influence on recombinational dynamic. Genetics 136(3):789-802. [http://www.ncbi.nlm.nih.gov/pubmed/?term=8005434 PMID:8005434]
 +
* Percudani R, Pavesi A and Ottonello S. (1997) Transfer RNA gene redundancy and translational selection in ''Saccharomyces cerevisiae''. J Mol Biol 268(2):322-30. [http://www.ncbi.nlm.nih.gov/pubmed/?term=9159473 PMID:9159473]
 +
* Kim JM, Vanguri S, Boeke JD, Gabriel A and Voytas DF. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete ''Saccharomyces cerevisiae'' genome sequence. Genome Res 8(5):464-78. [http://www.ncbi.nlm.nih.gov/pubmed/?term=9582191 PMID:9582191]
 +
* Yang C, Theis JF and Newlon CS. (1999) Conservation of ARS elements and chromosomal DNA replication origins on chromosomes III of ''Saccharomyces cerevisiae'' and ''S. carlsbergensis''. Genetics 152(3):933-41. [http://www.ncbi.nlm.nih.gov/pubmed/?term=10388813 PMID:10388813]
 +
* Sil A, Herskowitz I. (1996) Identification of asymmetrically localized determinant, Ash1p, required for lineage-specific transcription of the yeast HO gene. Cell 8;84(5):711-22. [http://www.ncbi.nlm.nih.gov/pubmed/?term=8625409 PMID: 8625409]
 +
* Bobola N, Jansen RP, Shin TH, Nasmyth K. (1996) Asymmetric accumulation of Ash1p in postanaphase nuclei depends on a myosin and restricts yeast mating-type switching to mother cells. Cell. 8;84(5):699-709. [http://www.ncbi.nlm.nih.gov/pubmed/?term=8625408 PMID: 8625408]
 +
 
 +
=Sequencing Consortium Results for each Chromosome=
 +
 
 +
* Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, ''et al''. (1996) Life with 6000 genes. Science 274(5287):546, 563-7. [http://www.ncbi.nlm.nih.gov/pubmed/?term=8849441 PMID:8849441]
 +
 
 +
* Bussey H, Kaback DB, Zhong W, Vo DT, Clark MW, ''et al''. (1995) The nucleotide sequence of chromosome I from ''Saccharomyces cerevisiae''. Proc Natl Acad Sci USA 92(9):3809-13. [http://www.ncbi.nlm.nih.gov/pubmed/?term=7731988 PMID:7731988]
 +
* Feldmann H, Aigle M, Aljinovic G, André B, Baclet MC, ''et al''. (1994) Complete DNA sequence of yeast chromosome II. EMBO J 13(24):5795-809. [http://www.ncbi.nlm.nih.gov/pubmed/?term=7813418 PMID:7813418]
 +
* Oliver SG, van der Aart QJ, Agostoni-Carbone ML, Aigle M, Alberghina L, ''et al''. (1992) The complete DNA sequence of yeast chromosome III. Nature 357(6373):38-46. [http://www.ncbi.nlm.nih.gov/pubmed/?term=1574125 PMID:1574125]
 +
 
 +
* Jacq C, Alt-Mörbe J, André B, Arnold W, Bahr A, ''et al''. (1997) The nucleotide sequence of ''Saccharomyces cerevisiae'' chromosome IV. Nature 387(6632):75-8. [http://www.ncbi.nlm.nih.gov/pubmed/?term=9169867 PMID:9169867]
 +
 
 +
* Dietrich FS, Mulligan J, Hennessy K, Yelton MA, Allen E, ''et al''. (1997) The nucleotide sequence of ''Saccharomyces cerevisiae'' chromosome V. Nature 387(6632):78-81. [http://www.ncbi.nlm.nih.gov/pubmed/?term=9169868 PMID:9169868]
 +
 
 +
* Murakami Y, Naitou M, Hagiwara H, Shibata T, Ozawa M, ''et al''. (1995) Analysis of the nucleotide sequence of chromosome VI from ''Saccharomyces cerevisiae''. Nat Genet 10(3):261-8. [http://www.ncbi.nlm.nih.gov/pubmed/?term=7670463 PMID:7670463]
 +
 
 +
* Tettelin H, Agostoni Carbone ML, Albermann K, Albers M, Arroyo J, ''et al''. (1997) The nucleotide sequence of ''Saccharomyces cerevisiae'' chromosome VII. Nature 387(6632):81-4. [http://www.ncbi.nlm.nih.gov/pubmed/?term=9169869 PMID:9169869]
 +
 
 +
* Johnston M, Andrews S, Brinkman R, Cooper J, Ding H, ''et al''. (1994) Complete nucleotide sequence of ''Saccharomyces cerevisiae'' chromosome VIII. Science 265(5181):2077-82. [http://www.ncbi.nlm.nih.gov/pubmed/?term=8091229 PMID:8091229]
 +
 
 +
*Churcher C, Bowman S, Badcock K, Bankier A, Brown D, ''et al''. (1997) The nucleotide sequence of ''Saccharomyces cerevisiae'' chromosome IX. Nature 387(6632):84-7. [http://www.ncbi.nlm.nih.gov/pubmed/?term=9169870 PMID:9169870]
 +
 
 +
* Galibert F, Alexandraki D, Baur A, Boles E, Chalwatzis N, ''et al''. (1996) Complete nucleotide sequence of ''Saccharomyces cerevisiae'' chromosome X. Embo J 15(9):2031-49. [http://www.ncbi.nlm.nih.gov/pubmed/?term=8641269 PMID:8641269]
 +
 
 +
* Dujon B, Alexandraki D, André B, Ansorge W, Baladron V, ''et al''. (1994) Complete DNA sequence of yeast chromosome XI. Nature 369(6479):371-8. [http://www.ncbi.nlm.nih.gov/pubmed/?term=8196765 PMID:8196765]
 +
 
 +
* Johnston M, Hillier L, Riles L, Albermann K, André B, ''et al''. (1997) The nucleotide sequence of ''Saccharomyces cerevisiae'' chromosome XII. Nature 387(6632):87-90. [http://www.ncbi.nlm.nih.gov/pubmed/?term=9169871 PMID:9169871]
 +
 
 +
* Bowman S, Churcher C, Badcock K, Brown D, Chillingworth T, ''et al''. (1997) The nucleotide sequence of ''Saccharomyces cerevisiae'' chromosome XIII. Nature 387(6632):90-3. [http://www.ncbi.nlm.nih.gov/pubmed/?term=9169872 PMID:9169872]
 +
 
 +
* Philippsen P, Kleine K, Pöhlmann R, Düsterhöft A, Hamberg K, ''et al''. (1997) The nucleotide sequence of ''Saccharomyces cerevisiae'' chromosome XIV and its evolutionary implications. Nature 387(6632):93-8. [http://www.ncbi.nlm.nih.gov/pubmed/?term=9169873 PMID:9169873]
 +
 
 +
* Dujon B, Albermann K, Aldea M, Alexandraki D, Ansorge W, ''et al''. (1997) The nucleotide sequence of ''Saccharomyces cerevisiae'' chromosome XV. Nature 387(6632):98-102. [http://www.ncbi.nlm.nih.gov/pubmed/?term=9169874 PMID:9169874]
 +
 
 +
* Bussey H, Storms RK, Ahmed A, Albermann K, Allen E, ''et al''. (1997) The nucleotide sequence of ''Saccharomyces cerevisiae'' chromosome XVI. Nature 387(6632):103-5. [http://www.ncbi.nlm.nih.gov/pubmed/?term=9169875 PMID:9169875]
 +
 
 +
* Foury F, Roganti T, Lecrenier N and Purnelle B. (1998) The complete sequence of the mitrochondrial genome of ''Saccharomyces cerevisiae''. FEBS Lett 440(3):325-31. [http://www.ncbi.nlm.nih.gov/pubmed/?term=9872396 PMID:9873296]
 +
 
 +
=Strains=
 +
* Mortimer R and Johnston JR. (1986) Geneology of principal strains of the yeast genetic stock center. Genetics 113(1):35-43. [http://www.ncbi.nlm.nih.gov/pubmed/?term=PMID%3A+3519363 PMID:3519363]
 +
* Tawfik OW, Papasian CJ, Dixon AY, ''et al''. (1989) ''Saccharomyces cerevisiae'' pneumonia in a patient with acquired immune deficiency syndrome. J Clin Microbiol 27(7):1689-91. [http://www.ncbi.nlm.nih.gov/pubmed/?term=2671026 PMID:2671026]
 +
* Winston F, Dollard C and Ricupero-Hovasse SL. (1995) Construction of a set of convenient ''Saccharomyces cerevisiae'' strains that are isogenic to S288C. Yeast 11(1):53-5. [http://www.ncbi.nlm.nih.gov/pubmed/?term=7762301 PMID:7762301]
 +
* Pérez-Ortín JE, Querol A, Puig S, ''et al''. (2002) Molecular characterization of chromosomal rearrangement involved in the adaptive evolution of yeast strains. Genome Res 12(10):1533-9. [http://www.ncbi.nlm.nih.gov/pubmed/?term=12368245 PMID:12368245]
 +
* Sniegowski PD, Dombrowski PG and Fingerman E. (2002) ''Saccharomyces cerevisiae'' and ''Saccharomyces paradoxus'' coexist in a natural woodland site in North America and display different levels of reproductive isolation from European conspecifics. FEMS Yeast Res 1(4):299-306. [http://www.ncbi.nlm.nih.gov/pubmed/?term=12702333 PMID:12702333]
 +
* Fay JC, McCullough HL, Sniegowski PD, ''et al''. (2004) Population genetic variation in gene expression is associated with phenotypic variation in ''Saccharomyces cerevisiae''. Genome Biol 5(4):R26. [http://www.ncbi.nlm.nih.gov/pubmed/?term=15059259 PMID:15059259]
 +
* Gu Z, David L, Petrov D, ''et al''. (2005) Elevated evolutionary rates in the laboratory strain of ''Saccharomyces cerevisiae''. Proc Natl Acad Sci USA 102(4):1092-7. [http://www.ncbi.nlm.nih.gov/pubmed/?term=15647350 PMID:15647350]
 +
* Ronald J, Tang H and Brem RB. (2006) Genomewide evolutionary rates in laboratory and wild yeast. Genetics 174(1):541-4. [http://www.ncbi.nlm.nih.gov/pubmed/?term=16816417 PMID:16816417]
 +
* Wei W, McCusker JH, Hyman RW, ''et al''. (2007) Genome sequencing and comparative analysis of ''Saccharomyces cerevisiae'' strain YJM789. (2007) Proc Natl Acad Sci USA 104(31):12825-30. [http://www.ncbi.nlm.nih.gov/pubmed/?term=17652520 PMID:17652520]
 +
* Omura F, Hatanaka H and Nakao Y. (2007) Characterization of a novel tyrosine permease of larger brewing yeast shared by ''Saccharomyces cerevisiae'' strain RM11-1a. FEMS Yeast Res 7(8):1350-61. [http://www.ncbi.nlm.nih.gov/pubmed/?term=17825063 PMID:17825063]
 +
* Borneman AR, Forgan AH, Pretorius IS, ''et al''. (2008) Comparative genome analysis of a ''Saccharomyces cerevisiae'' wine strain. FEMS Yeast Res 8(7):1185-95. [http://www.ncbi.nlm.nih.gov/pubmed/?term=18778279 PMID:18778279]
 +
* Argueso JL, Carazzolle MF, Mieczkowski PA, ''et al''. (2009) Genome structure of a ''Saccharomyces cerevisiae'' strain widely used in bioethanol production. Genome Res 19(12):2258-70. [http://www.ncbi.nlm.nih.gov/pubmed/?term=19812109 PMID:19812109]
 +
* Novo M, Bigey Y, Beyne E, ''et al''. (2009) Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast ''Saccharomyces cerevisiae'' EC1118. Proc Natl Acad Sci USA 106(38):16333-8. [http://www.ncbi.nlm.nih.gov/pubmed/?term=19805302 PMID:19805302]
 +
* Borneman AR, Desany BA, Riches D, ''et al''. (2011) Whole-genome comparison reveals novel genetic elements that characterize the genome of industrial strains of ''Saccharomyces cerevisiae''. PLoS Genet 7(2):e1001287. [http://www.ncbi.nlm.nih.gov/pubmed/?term=21304888 PMID:21304888]
 +
* Akao T, Yashiro I, Hosoyama A, ''et al''. (2011) Whole-genome sequencing of sake yeast ''Saccharomyces cerevisiae'' Kyokai no. 7. DNA Res 18(6):423-34. [http://www.ncbi.nlm.nih.gov/pubmed/?term=21900213 PMID:21900213]
 +
* Libkind D, Hittinger CT, Valério E, ''et al''. (2011) Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast. Proc Natl Acad Sci USA 108(35):14539-44. [http://www.ncbi.nlm.nih.gov/pubmed/?term=21873232 PMID:21873232]
 +
* Nguyen HV, Legras JL, Neuvéglise C, ''et al''. (2011) Deciphering the hybridisation history leading to the Lager lineage based on mosaic genomes of ''Saccharomyces bayanus'' strains NBRC1948 and CBS380. PLoS One 6(10):e25821. [http://www.ncbi.nlm.nih.gov/pubmed/?term=21998701 PMID:21998701]
 +
* Nijkamp JF, van den Broek M, Datema E, ''et al''. (2012) De novo sequencing, assembly and analysis of the genome of the laboratory strain ''Saccharomyces cerevisiae'' CEN.PK113-7D, a model for modern industrial biotechnology. Microb Cell Fact 11:36. [http://www.ncbi.nlm.nih.gov/pubmed/?term=22448915 PMID:22448915]
 +
* Ralser M, Kuhl H, Ralser M, ''et al''. (2012) The ''Saccharomyces cerevisiae'' W303-K6001 cross-platform genome sequence: insights into ancestry and physiology of a laboratory mutt. Open Biol 2(8):120093. [http://www.ncbi.nlm.nih.gov/pubmed/?term=22977733 PMID:22977733]
 +
* Borneman AR, Desany BA, Riches D, ''et al''. (2012) The genome sequence of the wine yeast VIN7 reveals an allotriploid hybrid genome with ''Saccharomyces cerevisiae'' and ''Saccharomyces kudriavzevii'' origins. FEMS Yeast Res 12(1):88-96. [http://www.ncbi.nlm.nih.gov/pubmed/?term=22136070 PMID:22136070]
 +
* Erny C, Raoult P, Alais A, ''et al''. (2012) Ecological success of a group of ''Saccharomyces cerevisiae'' / ''Saccharomyces kudriavzevii'' hybrids in the Northern European wine-making environment. Appl Environ Microbiol 78(9):3256-65. [http://www.ncbi.nlm.nih.gov/pubmed/?term=22344648 PMID:22344648]
 +
* Peris D, Lopes CA, Belloch C, ''et al''. (2012) Comparative genomics among ''Saccharomyces cerevisiae'' x ''Saccharomyces kudriavzevii'' natural hybrid strains isolated from wine and beer reveals different origins. BMC Genomics 13:407. [http://www.ncbi.nlm.nih.gov/pubmed/?term=22906207 PMID:22906207]

Latest revision as of 00:15, 2 September 2013

Classical Yeast Cell Biology, Early Maps, and Genome Surveys

  • Ephrussi B, Hottingeur H and Tavlitski J. (1949) Action de l'acriflavine sur les levures. II. Étude génétique du mutant "petite colonie". Ann Inst Pasteur 76:419-50.
  • Lindegren CC. (1949) The Yeast Cell: Its Genetics and Cytology. Educational Publishers Inc, 18:2. Open Library
  • Pomper S and Burkholder PR. (1949) Studies on the Biochemical Genetics of Yeast. Proc Natl Acad Sci USA 35(8):456-64. PMID:16588920
  • Reaume SE and Tatum EL. (1949) Spontaneous and nitrogen mustard-induced nutritional deficiencies in Saccharomyces cerevisiae. Arch Biochem 22(3):331-8. PMID:18134538
  • Lindegren CC and Lindegren G. (1951) Linkage relationships in Saccharomyces of genes controlling the fermentation of carbohydrates and the synthesis of vitamins, amino acids and nucleic acid components. Indian Phytopathol 4:11-20.
  • Roman H, Hawthorne DC and Douglas HC. (1951) Polyploidy in yeast and its bearing on the occurrence of irregular genetic ratios. Proc Natl Acad Sci USA 37(2):79-84. PMID:14808168
  • Pomper S. (1952) Purine-requiring and pyrimidine-requiring mutants of Saccharomyces cerevisiae. J Bacteriol 63(6):707-13. PMID:14938332
  • Hawthorne DC. (1956) The genetics of galactose fermentation in Saccharomyces hybrids. Compt Rend Lab Carlsberg, Ser Physiol 26:149-160.
  • Lindegren CC, Lindegren G, Shult EE and Desborough S. (1959) Chromosome maps of Saccharomyces. Nature 183(4664):800-2. PMID:13644197
  • Hawthorne DC and Mortimer RK. (1960) Chromosome Mapping in Saccharomyces: Centromere-Linked Genes. Genetics 45(8):1085-110. PMID:17247984
  • Hartwell LH. (1970) Genetic control of the cell-division cycle in yeast. I. Detection of mutants. Proc Natl Acad Sci USA 66(2):352-9. PMID:5271168
  • Hartwell LH. (1971) Genetic control of the cell division cycle in yeast. II. Genes controlling DNA replication and its initiation. J Mol Biol 59(1):183-94. PMID: 5283752
  • Culotti J. and Hartwell LH. (1971) Genetic control of the cell division cycle in yeast. 3. Seven genes controlling nuclear division. Exp Cell Res 67(2):389-401. PMID: 5097524
  • Hartwell LH. (1971) Genetic control of the cell division cycle in yeast. IV. Genes controlling bud emergence and cytokinesis. Exp Cell Res 69(2):265-76. PMID: 4950437
  • Hartwell LH, Mortimer RK, Culotti J and Culotti M. (1973) Genetic Control of the Cell Division Cycle in Yeast: V. Genetic Analysis of cdc Mutants. Genetics 74(2):267-286. PMID: 17248617
  • Hartwell LH, Culotti J, Pringle JR and Reid BJ. (1974) Genetic control of the cell division cycle in yeast. Science 183(4120):46-51. PMID: 4587263
  • Johnston GC, Pringle JR and Hartwell LH. (1977) Coordination of growth with cell division in the yeast Saccharomyces cerevisiae. Exp Cell Res 105(1):79-98. PMID: 320023
  • Novick P and Schekman R. (1979) Secretion and cell-surface growth are blocked in a temperature-sensitive mutant of Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 76(4):1858-62. PMID: 377286
  • Novick P, Field C and Schekman R. (1980) Identification of 23 complementation groups required for post-translational events in the yeast secretory pathway. Cell 21(1):205-15. PMID: 6996832
  • Clarke L and Carbon J. (1980) Isolation of a yeast centromere and construction of functional small circular chromosomes. Nature 287(5782):504-9. PMID: 6999364
  • Mortimer RK and Schild D. (1980) Genetic map of Saccharomyces cerevisiae. Microbiol Rev 44(4):519-71. PMID:7010111
  • Novick P, Ferro S and Schekman R. (1981) Order of events in the yeast secretory pathway. Cell 25(2):461-9. PMID: 7026045
  • Carlson M, Osmond BC and Botstein D. (1981) Mutants of yeast defective in sucrose utilization. Genetics 98(1):25-40. PMID: 7040163
  • Orr-Weaver TL, Szostak JW and Rothstein RJ. (1981) Yeast transformation: a model system for the study of recombination. Proc Natl Acad Sci U S A 78(10):6354-8. PMID:6273866
  • Klapholz S and Esposito RE. (1982) Chromosomes XIV and XVII of Saccharomyces cerevisiae constitute a single linkage group. Mol Cell Biol 2(11):1399-409. PMID:6761582
  • Carlson M and Botstein D. (1983) Organization of the SUC gene family in Saccharomyces. Mol Cell Biol 3(3):351-9. PMID:6843548
  • Hieter P, Pridmore D, Hegemann JH, Thomas M, Davis RW and Philippsen P. (1985) Functional selection and analysis of yeast centromeric DNA. Cell 42(3):913-21. PMID:2996783
  • Olson MV, Dutchik JE, Graham MY, Brodeur GM, Helms C, Frank M, MacCollin M, Scheinman R and Frank T. (1986) Random-clone strategy for genomic restriction mapping in yeast. Proc Natl Acad Sci USA 83(20):7826-30. PMID:3463999
  • Chow TH, Sollitti P and Marmur J. (1989) Structure of the multigene family of MAL loci in Saccharomyces. Mol Gen Genet 217(1):60-9. PMID:2549370
  • Link AJ and Olson MV. (1991) Physical map of the Saccharomyces cerevisiae genome at 110-kilobase resolution. Genetics 127(4):681-98. PMID:2029969
  • Percudani R, Pavesi A and Ottonello S. (1997) Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. J Mol Biol 268(2):322-30. PMID:9159473
  • Deshpande AM and Newlon CS. (1992) The ARS consensus sequence is required for chromosomal origin function in Saccharomyces cerevisiae. Mol Cell Biol 12(10):4305-13. PMID:1406623
  • Riles L, Dutchik JE, Baktha A, McCauley BK, Thayer EC, Leckie MP, Braden VV, Depke JE and Olson MV. (1993) Physical maps of the six smallest chromosomes of Saccharomyces cerevisiae at a resolution of 2.6 kilobase pairs. Genetics 134(1):81-150. PMID:8514151
  • Hegemann JH and Fleig UN. (1993) The centromere of budding yeast. Bioessays 15(7):451-60. PMID:8379948
  • Shirahige K, Iwasaki T, Rashid MB, Ogasawara N and Yoshikawa H. (1993) Location and characterization of autonomously replicating sequences from chromosome VI of Saccharomyces cerevisae. Mol Cell Biol 13(8):5043-56. PMID:8336734
  • Louis EJ, Naumova ES, Lee A, Naumov G and Haber JE. (1994) The chromosome end in yeast: its mosaic nature and influence on recombinational dynamic. Genetics 136(3):789-802. PMID:8005434
  • Percudani R, Pavesi A and Ottonello S. (1997) Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. J Mol Biol 268(2):322-30. PMID:9159473
  • Kim JM, Vanguri S, Boeke JD, Gabriel A and Voytas DF. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78. PMID:9582191
  • Yang C, Theis JF and Newlon CS. (1999) Conservation of ARS elements and chromosomal DNA replication origins on chromosomes III of Saccharomyces cerevisiae and S. carlsbergensis. Genetics 152(3):933-41. PMID:10388813
  • Sil A, Herskowitz I. (1996) Identification of asymmetrically localized determinant, Ash1p, required for lineage-specific transcription of the yeast HO gene. Cell 8;84(5):711-22. PMID: 8625409
  • Bobola N, Jansen RP, Shin TH, Nasmyth K. (1996) Asymmetric accumulation of Ash1p in postanaphase nuclei depends on a myosin and restricts yeast mating-type switching to mother cells. Cell. 8;84(5):699-709. PMID: 8625408

Sequencing Consortium Results for each Chromosome

  • Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, et al. (1996) Life with 6000 genes. Science 274(5287):546, 563-7. PMID:8849441
  • Bussey H, Kaback DB, Zhong W, Vo DT, Clark MW, et al. (1995) The nucleotide sequence of chromosome I from Saccharomyces cerevisiae. Proc Natl Acad Sci USA 92(9):3809-13. PMID:7731988
  • Feldmann H, Aigle M, Aljinovic G, André B, Baclet MC, et al. (1994) Complete DNA sequence of yeast chromosome II. EMBO J 13(24):5795-809. PMID:7813418
  • Oliver SG, van der Aart QJ, Agostoni-Carbone ML, Aigle M, Alberghina L, et al. (1992) The complete DNA sequence of yeast chromosome III. Nature 357(6373):38-46. PMID:1574125
  • Jacq C, Alt-Mörbe J, André B, Arnold W, Bahr A, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome IV. Nature 387(6632):75-8. PMID:9169867
  • Dietrich FS, Mulligan J, Hennessy K, Yelton MA, Allen E, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome V. Nature 387(6632):78-81. PMID:9169868
  • Murakami Y, Naitou M, Hagiwara H, Shibata T, Ozawa M, et al. (1995) Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae. Nat Genet 10(3):261-8. PMID:7670463
  • Tettelin H, Agostoni Carbone ML, Albermann K, Albers M, Arroyo J, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome VII. Nature 387(6632):81-4. PMID:9169869
  • Johnston M, Andrews S, Brinkman R, Cooper J, Ding H, et al. (1994) Complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII. Science 265(5181):2077-82. PMID:8091229
  • Churcher C, Bowman S, Badcock K, Bankier A, Brown D, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome IX. Nature 387(6632):84-7. PMID:9169870
  • Galibert F, Alexandraki D, Baur A, Boles E, Chalwatzis N, et al. (1996) Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X. Embo J 15(9):2031-49. PMID:8641269
  • Dujon B, Alexandraki D, André B, Ansorge W, Baladron V, et al. (1994) Complete DNA sequence of yeast chromosome XI. Nature 369(6479):371-8. PMID:8196765
  • Johnston M, Hillier L, Riles L, Albermann K, André B, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XII. Nature 387(6632):87-90. PMID:9169871
  • Bowman S, Churcher C, Badcock K, Brown D, Chillingworth T, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XIII. Nature 387(6632):90-3. PMID:9169872
  • Philippsen P, Kleine K, Pöhlmann R, Düsterhöft A, Hamberg K, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XIV and its evolutionary implications. Nature 387(6632):93-8. PMID:9169873
  • Dujon B, Albermann K, Aldea M, Alexandraki D, Ansorge W, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XV. Nature 387(6632):98-102. PMID:9169874
  • Bussey H, Storms RK, Ahmed A, Albermann K, Allen E, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI. Nature 387(6632):103-5. PMID:9169875
  • Foury F, Roganti T, Lecrenier N and Purnelle B. (1998) The complete sequence of the mitrochondrial genome of Saccharomyces cerevisiae. FEBS Lett 440(3):325-31. PMID:9873296

Strains

  • Mortimer R and Johnston JR. (1986) Geneology of principal strains of the yeast genetic stock center. Genetics 113(1):35-43. PMID:3519363
  • Tawfik OW, Papasian CJ, Dixon AY, et al. (1989) Saccharomyces cerevisiae pneumonia in a patient with acquired immune deficiency syndrome. J Clin Microbiol 27(7):1689-91. PMID:2671026
  • Winston F, Dollard C and Ricupero-Hovasse SL. (1995) Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C. Yeast 11(1):53-5. PMID:7762301
  • Pérez-Ortín JE, Querol A, Puig S, et al. (2002) Molecular characterization of chromosomal rearrangement involved in the adaptive evolution of yeast strains. Genome Res 12(10):1533-9. PMID:12368245
  • Sniegowski PD, Dombrowski PG and Fingerman E. (2002) Saccharomyces cerevisiae and Saccharomyces paradoxus coexist in a natural woodland site in North America and display different levels of reproductive isolation from European conspecifics. FEMS Yeast Res 1(4):299-306. PMID:12702333
  • Fay JC, McCullough HL, Sniegowski PD, et al. (2004) Population genetic variation in gene expression is associated with phenotypic variation in Saccharomyces cerevisiae. Genome Biol 5(4):R26. PMID:15059259
  • Gu Z, David L, Petrov D, et al. (2005) Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae. Proc Natl Acad Sci USA 102(4):1092-7. PMID:15647350
  • Ronald J, Tang H and Brem RB. (2006) Genomewide evolutionary rates in laboratory and wild yeast. Genetics 174(1):541-4. PMID:16816417
  • Wei W, McCusker JH, Hyman RW, et al. (2007) Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789. (2007) Proc Natl Acad Sci USA 104(31):12825-30. PMID:17652520
  • Omura F, Hatanaka H and Nakao Y. (2007) Characterization of a novel tyrosine permease of larger brewing yeast shared by Saccharomyces cerevisiae strain RM11-1a. FEMS Yeast Res 7(8):1350-61. PMID:17825063
  • Borneman AR, Forgan AH, Pretorius IS, et al. (2008) Comparative genome analysis of a Saccharomyces cerevisiae wine strain. FEMS Yeast Res 8(7):1185-95. PMID:18778279
  • Argueso JL, Carazzolle MF, Mieczkowski PA, et al. (2009) Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production. Genome Res 19(12):2258-70. PMID:19812109
  • Novo M, Bigey Y, Beyne E, et al. (2009) Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118. Proc Natl Acad Sci USA 106(38):16333-8. PMID:19805302
  • Borneman AR, Desany BA, Riches D, et al. (2011) Whole-genome comparison reveals novel genetic elements that characterize the genome of industrial strains of Saccharomyces cerevisiae. PLoS Genet 7(2):e1001287. PMID:21304888
  • Akao T, Yashiro I, Hosoyama A, et al. (2011) Whole-genome sequencing of sake yeast Saccharomyces cerevisiae Kyokai no. 7. DNA Res 18(6):423-34. PMID:21900213
  • Libkind D, Hittinger CT, Valério E, et al. (2011) Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast. Proc Natl Acad Sci USA 108(35):14539-44. PMID:21873232
  • Nguyen HV, Legras JL, Neuvéglise C, et al. (2011) Deciphering the hybridisation history leading to the Lager lineage based on mosaic genomes of Saccharomyces bayanus strains NBRC1948 and CBS380. PLoS One 6(10):e25821. PMID:21998701
  • Nijkamp JF, van den Broek M, Datema E, et al. (2012) De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology. Microb Cell Fact 11:36. PMID:22448915
  • Ralser M, Kuhl H, Ralser M, et al. (2012) The Saccharomyces cerevisiae W303-K6001 cross-platform genome sequence: insights into ancestry and physiology of a laboratory mutt. Open Biol 2(8):120093. PMID:22977733
  • Borneman AR, Desany BA, Riches D, et al. (2012) The genome sequence of the wine yeast VIN7 reveals an allotriploid hybrid genome with Saccharomyces cerevisiae and Saccharomyces kudriavzevii origins. FEMS Yeast Res 12(1):88-96. PMID:22136070
  • Erny C, Raoult P, Alais A, et al. (2012) Ecological success of a group of Saccharomyces cerevisiae / Saccharomyces kudriavzevii hybrids in the Northern European wine-making environment. Appl Environ Microbiol 78(9):3256-65. PMID:22344648
  • Peris D, Lopes CA, Belloch C, et al. (2012) Comparative genomics among Saccharomyces cerevisiae x Saccharomyces kudriavzevii natural hybrid strains isolated from wine and beer reveals different origins. BMC Genomics 13:407. PMID:22906207
Retrieved from "https://wiki.yeastgenome.org/index.php?title=Seminal_Yeast_Literature&oldid=398356"