Difference between revisions of "Other Fungi"
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*[http://www.nature.com/nature/journal/v415/n6874/abs/nature724.html <i>S. pombe</i> genomic sequence] published by V. Wood <i>et al.</i>, [http://www.nature.com/ Nature] <b>415,</b> 871-880 (2002) | *[http://www.nature.com/nature/journal/v415/n6874/abs/nature724.html <i>S. pombe</i> genomic sequence] published by V. Wood <i>et al.</i>, [http://www.nature.com/ Nature] <b>415,</b> 871-880 (2002) | ||
| − | *[http://www. | + | *[http://www.pombase.org/ PomBase] <i>S. pombe</i> database compiled at the [http://www.sanger.ac.uk/ Sanger Centre, UK] |
| − | *[http:// | + | *[http://genomebrowser.pombase.org/Multi/blastview Blast Server] for <i>S. pombe</i> compiled at the [http://www.sanger.ac.uk/ Sanger Centre, UK] |
| − | *[http://www. | + | *[http://www.pombase.org/status/sequencing-status European <i>Schizosaccharomyces</i> genome sequencing project] |
*[http://www-bcf.usc.edu/~forsburg/ General information about <i>S. pombe</i>] from the Forsburg Lab | *[http://www-bcf.usc.edu/~forsburg/ General information about <i>S. pombe</i>] from the Forsburg Lab | ||
| − | *[http://www- | + | *[http://www-bcf.usc.edu/~forsburg/plasmids.html <i>S. pombe</i> molecular genetics: plasmids, markers, maps and references] from the Forsburg Lab |
*[http://www-bcf.usc.edu/~forsburg/genetable.html An <i>S. pombe</i> nomenclature guide]: <i>S. pombe</i> genes mapped to <i>S. cerevisiae</i> genes from the Forsburg Lab | *[http://www-bcf.usc.edu/~forsburg/genetable.html An <i>S. pombe</i> nomenclature guide]: <i>S. pombe</i> genes mapped to <i>S. cerevisiae</i> genes from the Forsburg Lab | ||
=<i>Candida albicans</i> information= | =<i>Candida albicans</i> information= | ||
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*[http://www.candidagenome.org/ <i>Candida</i> Genome Database] at Stanford | *[http://www.candidagenome.org/ <i>Candida</i> Genome Database] at Stanford | ||
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*[http://www.cbs.umn.edu/lab/albicansmap Institute for <i>Candida</i> experimentation] at the University of Minnesota | *[http://www.cbs.umn.edu/lab/albicansmap Institute for <i>Candida</i> experimentation] at the University of Minnesota | ||
| − | *[http://www.nlm.nih.gov/medlineplus/ | + | *[http://www.nlm.nih.gov/medlineplus/yeastinfections.html Candidiasis information] at MEDLINE plus |
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=Links to other fungal information= | =Links to other fungal information= | ||
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==Euascomycota== | ==Euascomycota== | ||
| − | *[http://www. | + | *[http://www.broadinstitute.org/annotation/genome/aspergillus_group/GenomeDescriptions.html#%3Ci%3EA._fumigatus%3C/i%3E <i>Aspergillus fumigatus</i>] |
| − | *[http://www. | + | *[http://www.broadinstitute.org/annotation/genome/aspergillus_group/GenomeDescriptions.html#%3Ci%3EA._nidulans%3C/i%3E <i>Aspergillus nidulans</i>], [http://compbio.dfci.harvard.edu/cgi-bin/tgi/gimain.pl?gudb=a_nidulans <i>A. nidulans</i> Gene Index] |
| − | *[http://www. | + | *[http://www.broadinstitute.org/annotation/fungi/magnaporthe/ <i>Magnaporthe grisea</i>] |
| − | *[http://www. | + | *[http://www.broadinstitute.org/annotation/genome/neurospora/MultiHome.html <i>Neurospora crassa</i>] |
==Basidiomycota== | ==Basidiomycota== | ||
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* ''Cryptococcus'' | * ''Cryptococcus'' | ||
**[http://sequence-www.stanford.edu/group/C.neoformans/index.html ''Cryptococcus neoformans'' var. ''neoformans'' strain B3501] | **[http://sequence-www.stanford.edu/group/C.neoformans/index.html ''Cryptococcus neoformans'' var. ''neoformans'' strain B3501] | ||
| − | ** [http:// | + | ** [http://compbio.dfci.harvard.edu/cgi-bin/tgi/gimain.pl?gudb=cryptococcus ''Cryptococcus neoformans'' var. ''neoformans'' strain JEC21] |
| − | ** ''Cryptococcus neoformans'' var. ''grubii'' H99 - | + | ** ''Cryptococcus neoformans'' var. ''grubii'' H99 - [http://www.broadinstitute.org/annotation/genome/cryptococcus_neoformans/MultiHome.html Fungal Genome Initiative] |
| − | ** ''Cryptococcus gattii'' R265 - [http://www. | + | ** ''Cryptococcus gattii'' R265 - [http://www.broadinstitute.org/annotation/genome/cryptococcus_neoformans_b/MultiHome.html Fungal Genome Initiative] |
** ''Cryptococcus gattii'' WM276 - [http://www.bcgsc.ca/project/cryptococcus/ Kronstad Lab/British Columbia Genome Sequencing Centre] | ** ''Cryptococcus gattii'' WM276 - [http://www.bcgsc.ca/project/cryptococcus/ Kronstad Lab/British Columbia Genome Sequencing Centre] | ||
| − | * [http://www. | + | * [http://www.broadinstitute.org/annotation/genome/coprinus_cinereus/MultiHome.html ''Coprinus cinereus''] |
| − | * [http://www. | + | * [http://www.broadinstitute.org/annotation/genome/puccinia_group/MultiHome.html ''Puccinia graminis f. sp. tritici''] |
| − | * [http://www. | + | * [http://www.broadinstitute.org/annotation/genome/ustilago_maydis/ ''Ustilago maydis''], [http://mips.helmholtz-muenchen.de/genre/proj/ustilago/ MIPS resources]. |
==Archiascomycota== | ==Archiascomycota== | ||
* [http://pgp.cchmc.org/ ''Pneumocystis carinii''] | * [http://pgp.cchmc.org/ ''Pneumocystis carinii''] | ||
| − | * [http://www. | + | * [http://www.broadinstitute.org/annotation/genome/schizosaccharomyces_group/MultiHome.html ''Schizosaccharomyces japonicus''] |
==Hemiascomycota== | ==Hemiascomycota== | ||
| − | * The [http:// | + | * The [http://genolevures.org/ Génolevures] project, featuring partial genomic sequence for 13 Hemiascomycete species |
==Links== | ==Links== | ||
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*[http://www.aspgd.org/ Aspergillus Genome Database], a database for <i>A. nidulans, A. fumigatus, A. niger</i> and related species. | *[http://www.aspgd.org/ Aspergillus Genome Database], a database for <i>A. nidulans, A. fumigatus, A. niger</i> and related species. | ||
* [http://cryptogenome.ucsf.edu/ CryptoBase], a scientific database resource at [http://www.ucsf.edu/ UCSF] for ''C. neoformans'' var. ''grubii'' (serotype A) | * [http://cryptogenome.ucsf.edu/ CryptoBase], a scientific database resource at [http://www.ucsf.edu/ UCSF] for ''C. neoformans'' var. ''grubii'' (serotype A) | ||
| − | *[http:// | + | *[http://fungidb.org/fungidb/ FungiDB], a scientific database resource providing Genome Browser, BLAST, and downloadable genome annotations for many fungal genomes. |
Latest revision as of 09:22, 10 June 2013
Contents
Schizosaccharomyces pombe information
- S. pombe genomic sequence published by V. Wood et al., Nature 415, 871-880 (2002)
- PomBase S. pombe database compiled at the Sanger Centre, UK
- Blast Server for S. pombe compiled at the Sanger Centre, UK
- General information about S. pombe from the Forsburg Lab
- S. pombe molecular genetics: plasmids, markers, maps and references from the Forsburg Lab
- An S. pombe nomenclature guide: S. pombe genes mapped to S. cerevisiae genes from the Forsburg Lab
Candida albicans information
- Candida Genome Database at Stanford
- Candida information from the Stanford Genome Technology Center
- CandidaDB, a genomic database for C. albicans, part of the Galar Fungail Consortium project
- Institute for Candida experimentation at the University of Minnesota
- Candidiasis information at MEDLINE plus
Links to other fungal information
Fungal genome sequencing projects
Euascomycota
- Aspergillus fumigatus
- Aspergillus nidulans, A. nidulans Gene Index
- Magnaporthe grisea
- Neurospora crassa
Basidiomycota
- Cryptococcus
- Cryptococcus neoformans var. neoformans strain B3501
- Cryptococcus neoformans var. neoformans strain JEC21
- Cryptococcus neoformans var. grubii H99 - Fungal Genome Initiative
- Cryptococcus gattii R265 - Fungal Genome Initiative
- Cryptococcus gattii WM276 - Kronstad Lab/British Columbia Genome Sequencing Centre
Archiascomycota
Hemiascomycota
- The Génolevures project, featuring partial genomic sequence for 13 Hemiascomycete species
Links
- There is also list of currently sequenced or in progress fungal genome projects with references.
Fungal genome database projects
- Aspergillus Genome Database, a database for A. nidulans, A. fumigatus, A. niger and related species.
- CryptoBase, a scientific database resource at UCSF for C. neoformans var. grubii (serotype A)
- FungiDB, a scientific database resource providing Genome Browser, BLAST, and downloadable genome annotations for many fungal genomes.
