Difference between revisions of "YORCTy2-1"
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| − | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http:// | + | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://www.yeastgenome.org/cgi-bin/locus.pl?dbid=S000007168 YORCTy2-1] |
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name''' ||'' '' | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name''' ||'' '' | ||
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| − | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Aliases''' ||'' '' | + | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Aliases''' ||''Ty2'' |
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Feature type''' || retrotransposon[[Category:retrotransposon]] | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Feature type''' || retrotransposon[[Category:retrotransposon]] | ||
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates''' | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates''' | ||
| − | |nowrap| Chr XV: | + | |nowrap| Chr XV:710023..704063 |
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| − | | | + | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Primary SGDID''' || S000007168 |
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| − | '''Description of | + | '''Description of YORCTy2-1:''' Ty2 element, LTR retrotransposon of the Copia (Pseudoviridae) group; contains co-transcribed genes TYA Gag and TYB Pol, encoding proteins involved in structure and function of virus-like particles, flanked by two direct repeats<ref name='S000113972'>Boeke JD and Devine SE (1998) Yeast retrotransposons: finding a nice quiet neighborhood. Cell 93(7):1087-9 {{SGDpaper|S000113972}} PMID 9657139</ref><ref name='S000072465'>Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 {{SGDpaper|S000072465}} PMID 9582191</ref><ref name='S000086174'>Lesage P and Todeschini AL (2005) Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 110(1-4):70-90 |
| − | {{SGDpaper| | + | {{SGDpaper|S000086174}} PMID 16093660</ref> |
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==Community Commentary== | ==Community Commentary== | ||
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| + | Specifically higher expression in carbon limited chemostat cultures versus carbon excess. | ||
| + | <ref>Boer VM, et al. (2003) The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur. | ||
| + | J Biol Chem 278(5):3265-74</ref> | ||
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==References== | ==References== | ||
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Latest revision as of 13:05, 4 September 2012
Share your knowledge...Edit this entry! <protect>
| Systematic name | YORCTy2-1 |
| Gene name | |
| Aliases | Ty2 |
| Feature type | retrotransposon |
| Coordinates | Chr XV:710023..704063 |
| Primary SGDID | S000007168 |
Description of YORCTy2-1: Ty2 element, LTR retrotransposon of the Copia (Pseudoviridae) group; contains co-transcribed genes TYA Gag and TYB Pol, encoding proteins involved in structure and function of virus-like particles, flanked by two direct repeats[1][2][3]
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Contents
Community Commentary
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References
See Help:References on how to add references
- ↑ Boeke JD and Devine SE (1998) Yeast retrotransposons: finding a nice quiet neighborhood. Cell 93(7):1087-9 SGD PMID 9657139
- ↑ Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 SGD PMID 9582191
- ↑ Lesage P and Todeschini AL (2005) Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 110(1-4):70-90 SGD PMID 16093660
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