Difference between revisions of "YOR005C"
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− | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http:// | + | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://www.yeastgenome.org/cgi-bin/locus.pl?dbid=S000005531 YOR005C] |
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name''' ||''DNL4 '' | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name''' ||''DNL4 '' | ||
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|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates''' | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates''' | ||
− | |nowrap| Chr XV: | + | |nowrap| Chr XV:337343..334509 |
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+ | |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Primary SGDID''' || S000005531 | ||
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− | '''Description of | + | '''Description of YOR005C:''' DNA ligase required for nonhomologous end-joining (NHEJ), forms stable heterodimer with required cofactor Lif1p, interacts with Nej1p; involved in meiosis, not essential for vegetative growth<ref name='S000066210'>Frank-Vaillant M and Marcand S (2001) NHEJ regulation by mating type is exercised through a novel protein, Lif2p, essential to the ligase IV pathway. Genes Dev 15(22):3005-12 {{SGDpaper|S000066210}} PMID 11711435</ref><ref name='S000073483'>Liti G and Louis EJ (2003) NEJ1 prevents NHEJ-dependent telomere fusions in yeast without telomerase. Mol Cell 11(5):1373-8 {{SGDpaper|S000073483}} PMID 12769859</ref><ref name='S000054085'>Ramos W, et al. (1998) Biochemical and genetic characterization of the DNA ligase encoded by Saccharomyces cerevisiae open reading frame YOR005c, a homolog of mammalian DNA ligase IV. Nucleic Acids Res 26(24):5676-83 {{SGDpaper|S000054085}} PMID 9837999</ref><ref name='S000054228'>Schar P, et al. (1997) A newly identified DNA ligase of Saccharomyces cerevisiae involved in RAD52-independent repair of DNA double-strand breaks. Genes Dev 11(15):1912-24 {{SGDpaper|S000054228}} PMID 9271115</ref><ref name='S000047633'>Wilson TE, et al. (1997) Yeast DNA ligase IV mediates non-homologous DNA end joining. Nature 388(6641):495-8 |
{{SGDpaper|S000047633}} PMID 9242411</ref> | {{SGDpaper|S000047633}} PMID 9242411</ref> | ||
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==Community Commentary== | ==Community Commentary== | ||
{{CommentaryHelp}} | {{CommentaryHelp}} | ||
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+ | <!-- PLEASE ADD Community Commentary ABOVE THIS MESSAGE. See below for an example of community annotation --> | ||
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+ | Specifically higher expression in carbon limited chemostat cultures versus carbon excess. | ||
+ | <ref>Boer VM, et al. (2003) The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur. | ||
+ | J Biol Chem 278(5):3265-74</ref> | ||
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Latest revision as of 07:45, 23 January 2012
Share your knowledge...Edit this entry! <protect>
Systematic name | YOR005C |
Gene name | DNL4 |
Aliases | LIG4 |
Feature type | ORF, Verified |
Coordinates | Chr XV:337343..334509 |
Primary SGDID | S000005531 |
Description of YOR005C: DNA ligase required for nonhomologous end-joining (NHEJ), forms stable heterodimer with required cofactor Lif1p, interacts with Nej1p; involved in meiosis, not essential for vegetative growth[1][2][3][4][5]
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Contents
Community Commentary
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References
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- ↑ Frank-Vaillant M and Marcand S (2001) NHEJ regulation by mating type is exercised through a novel protein, Lif2p, essential to the ligase IV pathway. Genes Dev 15(22):3005-12 SGD PMID 11711435
- ↑ Liti G and Louis EJ (2003) NEJ1 prevents NHEJ-dependent telomere fusions in yeast without telomerase. Mol Cell 11(5):1373-8 SGD PMID 12769859
- ↑ Ramos W, et al. (1998) Biochemical and genetic characterization of the DNA ligase encoded by Saccharomyces cerevisiae open reading frame YOR005c, a homolog of mammalian DNA ligase IV. Nucleic Acids Res 26(24):5676-83 SGD PMID 9837999
- ↑ Schar P, et al. (1997) A newly identified DNA ligase of Saccharomyces cerevisiae involved in RAD52-independent repair of DNA double-strand breaks. Genes Dev 11(15):1912-24 SGD PMID 9271115
- ↑ Wilson TE, et al. (1997) Yeast DNA ligase IV mediates non-homologous DNA end joining. Nature 388(6641):495-8 SGD PMID 9242411
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