Difference between revisions of "MochiView"
(Created page with '*[http://johnsonlab.ucsf.edu/sj/mochiview-start/ Link to MochiView website] An announcement from Oliver Homann: <br><br> Hello, I'd like to alert the community to the availabi…') |
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*[http://johnsonlab.ucsf.edu/sj/mochiview-start/ Link to MochiView website] | *[http://johnsonlab.ucsf.edu/sj/mochiview-start/ Link to MochiView website] | ||
| − | + | ''(Page created by Oliver Homann, author of MochiView)'' | |
| − | + | MochiView is a platform-independent Java genome browser and motif analysis software. Hopefully some of you may find it useful. The | |
| − | platform-independent Java genome browser and motif analysis software | ||
| − | |||
software was originally designed for visualization and analysis of | software was originally designed for visualization and analysis of | ||
''C. albicans'' ChIP-Chip data, but has also been utilized for pure | ''C. albicans'' ChIP-Chip data, but has also been utilized for pure | ||
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takes ~10 minutes to download the software and install the necessary | takes ~10 minutes to download the software and install the necessary | ||
genome sequence and gene information (using the GFF files stored on | genome sequence and gene information (using the GFF files stored on | ||
| − | [http://downloads.yeastgenome.org/chromosomal_feature SGD],[http://www. | + | [http://downloads.yeastgenome.org/chromosomal_feature SGD],[http://www.candidagenome.org/download/gff/ CGD], or [http://www.aspgd.org/download/gff/ AspGD]). Visit the MochiView website to view: |
*[http://johnsonlab.ucsf.edu/sj/mochiview-screenshots/ Demo videos] | *[http://johnsonlab.ucsf.edu/sj/mochiview-screenshots/ Demo videos] | ||
Latest revision as of 16:13, 22 April 2010
(Page created by Oliver Homann, author of MochiView)
MochiView is a platform-independent Java genome browser and motif analysis software. Hopefully some of you may find it useful. The software was originally designed for visualization and analysis of C. albicans ChIP-Chip data, but has also been utilized for pure motif analysis as well as with ChIP-Seq/RNA-Seq data and with multiple additional genomes, including S. cerevisiae and humans. It takes ~10 minutes to download the software and install the necessary genome sequence and gene information (using the GFF files stored on SGD,CGD, or AspGD). Visit the MochiView website to view:
Contributions to the MochiView motif libraries would be appreciated! Contact us with suggestions, or to join the MochiView mailing list.
