snR128 - Revision history

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@@ Line 4: / Line 4: @@
 {|{{Prettytable}} align = 'right' width = '200px'
 |-
-|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=S000006508 snR128]
+|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://www.yeastgenome.org/cgi-bin/locus.pl?dbid=S000006508 snR128]
 |-
 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name'''         ||''SNR128 ''

@@ Line 13: / Line 13: @@
 |-
 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates'''
-|nowrap| Chr X:139687..139562
+|nowrap| Chr X:139691..139566
 |-
 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Primary SGDID'''           || S000006508

@@ Line 18: / Line 18: @@
 |}
 <br>
-'''Description of snR128:''' C/D box small nucleolar RNA (snoRNA), referred to as U14; essential gene required for cleavage of 35S primary rRNA transcript to release the precursor to the 18S rRNA; guides 2'-O-methylation of small subunit (SSU) rRNA at position C414<ref name='S000040421'>Zagorski J, et al. (1988) Characterization of an SNR gene locus in Saccharomyces cerevisiae that specifies both dispensible and essential small nuclear RNAs. Mol Cell Biol 8(8):3282-90 {{SGDpaper|S000040421}} PMID 2850487</ref><ref name='S000047107'>Li HD, et al. (1990) Depletion of U14 small nuclear RNA (snR128) disrupts production of 18S rRNA in Saccharomyces cerevisiae. Mol Cell Biol 10(3):1145-52 {{SGDpaper|S000047107}} PMID 2406561</ref><ref name='S000053492'>Lowe TM and Eddy SR (1999) A computational screen for methylation guide snoRNAs in yeast. Science 283(5405):1168-71 {{SGDpaper|S000053492}} PMID 10024243</ref><ref name='S000058443'>Venema J and Tollervey D (1999) Ribosome synthesis in Saccharomyces cerevisiae. Annu Rev Genet 33:261-311 {{SGDpaper|S000058443}} PMID 10690410</ref><ref name='S000058471'>Samarsky DA and Fournier MJ (1999) A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae. Nucleic Acids Res 27(1):161-4 {{SGDpaper|S000058471}} PMID 9847166</ref><ref name='S000120772'>Piekna-Przybylska D, et al. (2007) New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. RNA 13(3):305-12
+'''Description of snR128:''' C/D box small nucleolar RNA (snoRNA), referred to as U14; essential gene required for cleavage of 35S primary rRNA transcript to release the precursor to the 18S rRNA; guides 2'-O-methylation of small subunit (SSU) rRNA at position C414<ref name='S000047107'>Li HD, et al. (1990) Depletion of U14 small nuclear RNA (snR128) disrupts production of 18S rRNA in Saccharomyces cerevisiae. Mol Cell Biol 10(3):1145-52 {{SGDpaper|S000047107}} PMID 2406561</ref><ref name='S000053492'>Lowe TM and Eddy SR (1999) A computational screen for methylation guide snoRNAs in yeast. Science 283(5405):1168-71 {{SGDpaper|S000053492}} PMID 10024243</ref><ref name='S000120772'>Piekna-Przybylska D, et al. (2007) New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. RNA 13(3):305-12 {{SGDpaper|S000120772}} PMID 17283215</ref><ref name='S000058471'>Samarsky DA and Fournier MJ (1999) A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae. Nucleic Acids Res 27(1):161-4 {{SGDpaper|S000058471}} PMID 9847166</ref><ref name='S000058443'>Venema J and Tollervey D (1999) Ribosome synthesis in Saccharomyces cerevisiae. Annu Rev Genet 33:261-311 {{SGDpaper|S000058443}} PMID 10690410</ref><ref name='S000040421'>Zagorski J, et al. (1988) Characterization of an SNR gene locus in Saccharomyces cerevisiae that specifies both dispensible and essential small nuclear RNAs. Mol Cell Biol 8(8):3282-90
-  {{SGDpaper|S000120772}} PMID 17283215</ref>
+  {{SGDpaper|S000040421}} PMID 2850487</ref>
 <br>
 <br>

@@ Line 18: / Line 18: @@
 |}
 <br>
-'''Description of snR128:''' C/D box small nucleolar RNA (snoRNA), referred to as U14; essential gene required for cleavage of 35S primary rRNA transcript to release the precursor to the 18S rRNA; guides 2'-O-methylation of small subunit (SSU) rRNA at position C414<ref name='S000120772'>Piekna-Przybylska D, et al. (2007) New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. RNA 13(3):305-12 {{SGDpaper|S000120772}} PMID 17283215</ref><ref name='S000058471'>Samarsky DA and Fournier MJ (1999) A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae. Nucleic Acids Res 27(1):161-4 {{SGDpaper|S000058471}} PMID 9847166</ref><ref name='S000058443'>Venema J and Tollervey D (1999) Ribosome synthesis in Saccharomyces cerevisiae. Annu Rev Genet 33:261-311 {{SGDpaper|S000058443}} PMID 10690410</ref><ref name='S000053492'>Lowe TM and Eddy SR (1999) A computational screen for methylation guide snoRNAs in yeast. Science 283(5405):1168-71 {{SGDpaper|S000053492}} PMID 10024243</ref><ref name='S000047107'>Li HD, et al. (1990) Depletion of U14 small nuclear RNA (snR128) disrupts production of 18S rRNA in Saccharomyces cerevisiae. Mol Cell Biol 10(3):1145-52 {{SGDpaper|S000047107}} PMID 2406561</ref><ref name='S000040421'>Zagorski J, et al. (1988) Characterization of an SNR gene locus in Saccharomyces cerevisiae that specifies both dispensible and essential small nuclear RNAs. Mol Cell Biol 8(8):3282-90
+'''Description of snR128:''' C/D box small nucleolar RNA (snoRNA), referred to as U14; essential gene required for cleavage of 35S primary rRNA transcript to release the precursor to the 18S rRNA; guides 2'-O-methylation of small subunit (SSU) rRNA at position C414<ref name='S000040421'>Zagorski J, et al. (1988) Characterization of an SNR gene locus in Saccharomyces cerevisiae that specifies both dispensible and essential small nuclear RNAs. Mol Cell Biol 8(8):3282-90 {{SGDpaper|S000040421}} PMID 2850487</ref><ref name='S000047107'>Li HD, et al. (1990) Depletion of U14 small nuclear RNA (snR128) disrupts production of 18S rRNA in Saccharomyces cerevisiae. Mol Cell Biol 10(3):1145-52 {{SGDpaper|S000047107}} PMID 2406561</ref><ref name='S000053492'>Lowe TM and Eddy SR (1999) A computational screen for methylation guide snoRNAs in yeast. Science 283(5405):1168-71 {{SGDpaper|S000053492}} PMID 10024243</ref><ref name='S000058443'>Venema J and Tollervey D (1999) Ribosome synthesis in Saccharomyces cerevisiae. Annu Rev Genet 33:261-311 {{SGDpaper|S000058443}} PMID 10690410</ref><ref name='S000058471'>Samarsky DA and Fournier MJ (1999) A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae. Nucleic Acids Res 27(1):161-4 {{SGDpaper|S000058471}} PMID 9847166</ref><ref name='S000120772'>Piekna-Przybylska D, et al. (2007) New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. RNA 13(3):305-12
-  {{SGDpaper|S000040421}} PMID 2850487</ref>
+  {{SGDpaper|S000120772}} PMID 17283215</ref>
 <br>
 <br>

@@ Line 13: / Line 13: @@
 |-
 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates'''
-|nowrap| Chr X:139688..139563
+|nowrap| Chr X:139687..139562
 |-
 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Primary SGDID'''           || S000006508
 |}
 <br>
-'''Description of snR128:''' C/D box small nucleolar RNA (snoRNA); commonly referred to as U14; essential gene required for cleavage of 35S primary rRNA transcript to release the precursor to the 18S rRNA; guides 2'-O-methylation of small subunit (SSU) rRNA at position C414<ref name='S000120772'>Piekna-Przybylska D, et al. (2007) New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. RNA 13(3):305-12 {{SGDpaper|S000120772}} PMID 17283215</ref><ref name='S000058471'>Samarsky DA and Fournier MJ (1999) A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae. Nucleic Acids Res 27(1):161-4 {{SGDpaper|S000058471}} PMID 9847166</ref><ref name='S000058443'>Venema J and Tollervey D (1999) Ribosome synthesis in Saccharomyces cerevisiae. Annu Rev Genet 33():261-311 {{SGDpaper|S000058443}} PMID 10690410</ref><ref name='S000053492'>Lowe TM and Eddy SR (1999) A computational screen for methylation guide snoRNAs in yeast. Science 283(5405):1168-71 {{SGDpaper|S000053492}} PMID 10024243</ref><ref name='S000047107'>Li HD, et al. (1990) Depletion of U14 small nuclear RNA (snR128) disrupts production of 18S rRNA in Saccharomyces cerevisiae. Mol Cell Biol 10(3):1145-52 {{SGDpaper|S000047107}} PMID 2406561</ref><ref name='S000040421'>Zagorski J, et al. (1988) Characterization of an SNR gene locus in Saccharomyces cerevisiae that specifies both dispensible and essential small nuclear RNAs. Mol Cell Biol 8(8):3282-90
+'''Description of snR128:''' C/D box small nucleolar RNA (snoRNA), referred to as U14; essential gene required for cleavage of 35S primary rRNA transcript to release the precursor to the 18S rRNA; guides 2'-O-methylation of small subunit (SSU) rRNA at position C414<ref name='S000120772'>Piekna-Przybylska D, et al. (2007) New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. RNA 13(3):305-12 {{SGDpaper|S000120772}} PMID 17283215</ref><ref name='S000058471'>Samarsky DA and Fournier MJ (1999) A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae. Nucleic Acids Res 27(1):161-4 {{SGDpaper|S000058471}} PMID 9847166</ref><ref name='S000058443'>Venema J and Tollervey D (1999) Ribosome synthesis in Saccharomyces cerevisiae. Annu Rev Genet 33:261-311 {{SGDpaper|S000058443}} PMID 10690410</ref><ref name='S000053492'>Lowe TM and Eddy SR (1999) A computational screen for methylation guide snoRNAs in yeast. Science 283(5405):1168-71 {{SGDpaper|S000053492}} PMID 10024243</ref><ref name='S000047107'>Li HD, et al. (1990) Depletion of U14 small nuclear RNA (snR128) disrupts production of 18S rRNA in Saccharomyces cerevisiae. Mol Cell Biol 10(3):1145-52 {{SGDpaper|S000047107}} PMID 2406561</ref><ref name='S000040421'>Zagorski J, et al. (1988) Characterization of an SNR gene locus in Saccharomyces cerevisiae that specifies both dispensible and essential small nuclear RNAs. Mol Cell Biol 8(8):3282-90
   {{SGDpaper|S000040421}} PMID 2850487</ref>
 <br>

← Older revision	Revision as of 23:20, 21 May 2007
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← Older revision		Revision as of 11:32, 21 May 2007
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		+	<!-- PLEASE ADD Community Commentary ABOVE THIS MESSAGE. See below for an example of community annotation -->
		+	<!--
		+	Specifically higher expression in carbon limited chemostat cultures versus carbon excess.
		+	<ref>Boer VM, et al. (2003) The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur.
		+	J Biol Chem 278(5):3265-74</ref>
		+	-->

← Older revision		Revision as of 20:02, 21 February 2007
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		+
		+
		+
		+	<!-- PLEASE ADD Community Commentary ABOVE THIS MESSAGE. See below for an example of community annotation -->
		+	<!--
		+	Specifically higher expression in carbon limited chemostat cultures versus carbon excess.
		+	<ref>Boer VM, et al. (2003) The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur.
		+	J Biol Chem 278(5):3265-74</ref>
		+	-->

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