YOL066C - Revision history

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{|{{Prettytable}} align = 'right' width = '200px'
|-
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=YOL066C YOL066C]
|-
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name''' ||''RIB2 ''
|-
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Aliases''' ||''PUS8''
|-
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Feature type''' || ORF, Verified[[Category:ORF]][[Category:ORF, Verified]]
|-
|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates'''
|nowrap| Chr XV:204471..202696
|-
|colspan = '3'|{{Don'tEditThisBox}}
|}
 
'''Description of {{PAGENAME}}:''' DRAP deaminase, catalyzes the third step of the riboflavin biosynthesis pathway; cytoplasmic tRNA pseudouridine synthase involved in pseudouridylation of cytoplasmic tRNAs at position 32<ref name='S000080014'>Behm-Ansmant I, et al. (2004) Pseudouridylation at position 32 of mitochondrial and cytoplasmic tRNAs requires two distinct enzymes in Saccharomyces cerevisiae. J Biol Chem 279(51):52998-3006 {{SGDpaper|S000080014}} PMID 15466869</ref><ref name='S000072829'>Urban A, et al. (2003) Optimisation of expression and purification of the recombinant Yol066 (Rib2) protein from Saccharomyces cerevisiae. J Chromatogr B Analyt Technol Biomed Life Sci 786(1-2):187-95 {{SGDpaper|S000072829}} PMID 12651014</ref><ref name='S000054618'>Richter G, et al. (1997) Biosynthesis of riboflavin: characterization of the bifunctional deaminase-reductase of Escherichia coli and Bacillus subtilis. J Bacteriol 179(6):2022-8
{{SGDpaper|S000054618}} PMID 9068650</ref>
 
 
 
 

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==Community Commentary==
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==References==

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@@ Line 18: / Line 18: @@
 |}
 <br>
-'''Description of YOL066C:''' Bifunctional enzyme with DRAP deaminase and tRNA:pseudouridine synthase activity; the deaminase catalyzes the third step in riboflavin biosynthesis and the synthase catalyzes formation of pseudouridine at position 32 in cytoplasmic tRNAs<ref name='S000054618'>Richter G, et al. (1997) Biosynthesis of riboflavin: characterization of the bifunctional deaminase-reductase of Escherichia coli and Bacillus subtilis. J Bacteriol 179(6):2022-8 {{SGDpaper|S000054618}} PMID 9068650</ref><ref name='S000057176'>Oltmanns O and Bacher A (1972) Biosynthesis of riboflavine in Saccharomyces cerevisiae: the role of genes rib 1 and rib 7. J Bacteriol 110(3):818-22 {{SGDpaper|S000057176}} PMID 4555411</ref><ref name='S000080014'>Behm-Ansmant I, et al. (2004) Pseudouridylation at position 32 of mitochondrial and cytoplasmic tRNAs requires two distinct enzymes in Saccharomyces cerevisiae. J Biol Chem 279(51):52998-3006 {{SGDpaper|S000080014}} PMID 15466869</ref><ref name='S000072829'>Urban A, et al. (2003) Optimisation of expression and purification of the recombinant Yol066 (Rib2) protein from Saccharomyces cerevisiae. J Chromatogr B Analyt Technol Biomed Life Sci 786(1-2):187-95
+'''Description of YOL066C:''' Bifunctional enzyme with DRAP deaminase and tRNA:pseudouridine synthase activity; the deaminase catalyzes the third step in riboflavin biosynthesis and the synthase catalyzes formation of pseudouridine at position 32 in cytoplasmic tRNAs<ref name='S000080014'>Behm-Ansmant I, et al. (2004) Pseudouridylation at position 32 of mitochondrial and cytoplasmic tRNAs requires two distinct enzymes in Saccharomyces cerevisiae. J Biol Chem 279(51):52998-3006 {{SGDpaper|S000080014}} PMID 15466869</ref><ref name='S000057176'>Oltmanns O and Bacher A (1972) Biosynthesis of riboflavine in Saccharomyces cerevisiae: the role of genes rib 1 and rib 7. J Bacteriol 110(3):818-22 {{SGDpaper|S000057176}} PMID 4555411</ref><ref name='S000054618'>Richter G, et al. (1997) Biosynthesis of riboflavin: characterization of the bifunctional deaminase-reductase of Escherichia coli and Bacillus subtilis. J Bacteriol 179(6):2022-8 {{SGDpaper|S000054618}} PMID 9068650</ref><ref name='S000072829'>Urban A, et al. (2003) Optimisation of expression and purification of the recombinant Yol066 (Rib2) protein from Saccharomyces cerevisiae. J Chromatogr B Analyt Technol Biomed Life Sci 786(1-2):187-95
   {{SGDpaper|S000072829}} PMID 12651014</ref>
 <br>

@@ Line 18: / Line 18: @@
 |}
 <br>
-'''Description of YOL066C:''' Bifunctional enzyme with DRAP deaminase and tRNA:pseudouridine synthase activity; the deaminase catalyzes the third step in riboflavin biosynthesis and the synthase catalyzes formation of pseudouridine at position 32 in cytoplasmic tRNAs<ref name='S000054618'>Richter G, et al. (1997) Biosynthesis of riboflavin: characterization of the bifunctional deaminase-reductase of Escherichia coli and Bacillus subtilis. J Bacteriol 179(6):2022-8 {{SGDpaper|S000054618}} PMID 9068650</ref><ref name='S000080014'>Behm-Ansmant I, et al. (2004) Pseudouridylation at position 32 of mitochondrial and cytoplasmic tRNAs requires two distinct enzymes in Saccharomyces cerevisiae. J Biol Chem 279(51):52998-3006 {{SGDpaper|S000080014}} PMID 15466869</ref><ref name='S000072829'>Urban A, et al. (2003) Optimisation of expression and purification of the recombinant Yol066 (Rib2) protein from Saccharomyces cerevisiae. J Chromatogr B Analyt Technol Biomed Life Sci 786(1-2):187-95
+'''Description of YOL066C:''' Bifunctional enzyme with DRAP deaminase and tRNA:pseudouridine synthase activity; the deaminase catalyzes the third step in riboflavin biosynthesis and the synthase catalyzes formation of pseudouridine at position 32 in cytoplasmic tRNAs<ref name='S000054618'>Richter G, et al. (1997) Biosynthesis of riboflavin: characterization of the bifunctional deaminase-reductase of Escherichia coli and Bacillus subtilis. J Bacteriol 179(6):2022-8 {{SGDpaper|S000054618}} PMID 9068650</ref><ref name='S000057176'>Oltmanns O and Bacher A (1972) Biosynthesis of riboflavine in Saccharomyces cerevisiae: the role of genes rib 1 and rib 7. J Bacteriol 110(3):818-22 {{SGDpaper|S000057176}} PMID 4555411</ref><ref name='S000080014'>Behm-Ansmant I, et al. (2004) Pseudouridylation at position 32 of mitochondrial and cytoplasmic tRNAs requires two distinct enzymes in Saccharomyces cerevisiae. J Biol Chem 279(51):52998-3006 {{SGDpaper|S000080014}} PMID 15466869</ref><ref name='S000072829'>Urban A, et al. (2003) Optimisation of expression and purification of the recombinant Yol066 (Rib2) protein from Saccharomyces cerevisiae. J Chromatogr B Analyt Technol Biomed Life Sci 786(1-2):187-95
   {{SGDpaper|S000072829}} PMID 12651014</ref>
 <br>

@@ Line 18: / Line 18: @@
 |}
 <br>
-'''Description of YOL066C:''' DRAP deaminase, catalyzes the third step of the riboflavin biosynthesis pathway; cytoplasmic tRNA pseudouridine synthase involved in pseudouridylation of cytoplasmic tRNAs at position 32<ref name='S000054618'>Richter G, et al. (1997) Biosynthesis of riboflavin: characterization of the bifunctional deaminase-reductase of Escherichia coli and Bacillus subtilis. J Bacteriol 179(6):2022-8 {{SGDpaper|S000054618}} PMID 9068650</ref><ref name='S000080014'>Behm-Ansmant I, et al. (2004) Pseudouridylation at position 32 of mitochondrial and cytoplasmic tRNAs requires two distinct enzymes in Saccharomyces cerevisiae. J Biol Chem 279(51):52998-3006 {{SGDpaper|S000080014}} PMID 15466869</ref><ref name='S000072829'>Urban A, et al. (2003) Optimisation of expression and purification of the recombinant Yol066 (Rib2) protein from Saccharomyces cerevisiae. J Chromatogr B Analyt Technol Biomed Life Sci 786(1-2):187-95
+'''Description of YOL066C:''' Bifunctional enzyme with DRAP deaminase and tRNA:pseudouridine synthase activity; the deaminase catalyzes the third step in riboflavin biosynthesis and the synthase catalyzes formation of pseudouridine at position 32 in cytoplasmic tRNAs<ref name='S000054618'>Richter G, et al. (1997) Biosynthesis of riboflavin: characterization of the bifunctional deaminase-reductase of Escherichia coli and Bacillus subtilis. J Bacteriol 179(6):2022-8 {{SGDpaper|S000054618}} PMID 9068650</ref><ref name='S000080014'>Behm-Ansmant I, et al. (2004) Pseudouridylation at position 32 of mitochondrial and cytoplasmic tRNAs requires two distinct enzymes in Saccharomyces cerevisiae. J Biol Chem 279(51):52998-3006 {{SGDpaper|S000080014}} PMID 15466869</ref><ref name='S000072829'>Urban A, et al. (2003) Optimisation of expression and purification of the recombinant Yol066 (Rib2) protein from Saccharomyces cerevisiae. J Chromatogr B Analyt Technol Biomed Life Sci 786(1-2):187-95
   {{SGDpaper|S000072829}} PMID 12651014</ref>
 <br>

@@ Line 18: / Line 18: @@
 |}
 <br>
-'''Description of YOL066C:''' DRAP deaminase, catalyzes the third step of the riboflavin biosynthesis pathway; cytoplasmic tRNA pseudouridine synthase involved in pseudouridylation of cytoplasmic tRNAs at position 32<ref name='S000080014'>Behm-Ansmant I, et al. (2004) Pseudouridylation at position 32 of mitochondrial and cytoplasmic tRNAs requires two distinct enzymes in Saccharomyces cerevisiae. J Biol Chem 279(51):52998-3006 {{SGDpaper|S000080014}} PMID 15466869</ref><ref name='S000072829'>Urban A, et al. (2003) Optimisation of expression and purification of the recombinant Yol066 (Rib2) protein from Saccharomyces cerevisiae. J Chromatogr B Analyt Technol Biomed Life Sci 786(1-2):187-95 {{SGDpaper|S000072829}} PMID 12651014</ref><ref name='S000054618'>Richter G, et al. (1997) Biosynthesis of riboflavin: characterization of the bifunctional deaminase-reductase of Escherichia coli and Bacillus subtilis. J Bacteriol 179(6):2022-8
+'''Description of YOL066C:''' DRAP deaminase, catalyzes the third step of the riboflavin biosynthesis pathway; cytoplasmic tRNA pseudouridine synthase involved in pseudouridylation of cytoplasmic tRNAs at position 32<ref name='S000054618'>Richter G, et al. (1997) Biosynthesis of riboflavin: characterization of the bifunctional deaminase-reductase of Escherichia coli and Bacillus subtilis. J Bacteriol 179(6):2022-8 {{SGDpaper|S000054618}} PMID 9068650</ref><ref name='S000080014'>Behm-Ansmant I, et al. (2004) Pseudouridylation at position 32 of mitochondrial and cytoplasmic tRNAs requires two distinct enzymes in Saccharomyces cerevisiae. J Biol Chem 279(51):52998-3006 {{SGDpaper|S000080014}} PMID 15466869</ref><ref name='S000072829'>Urban A, et al. (2003) Optimisation of expression and purification of the recombinant Yol066 (Rib2) protein from Saccharomyces cerevisiae. J Chromatogr B Analyt Technol Biomed Life Sci 786(1-2):187-95
- {{SGDpaper|S000054618}} PMID 9068650</ref>
+ {{SGDpaper|S000072829}} PMID 12651014</ref>
 <br>
 <br>

← Older revision		Revision as of 20:02, 21 February 2007
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		+	<!-- PLEASE ADD Community Commentary ABOVE THIS MESSAGE. See below for an example of community annotation -->
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		+	Specifically higher expression in carbon limited chemostat cultures versus carbon excess.
		+	<ref>Boer VM, et al. (2003) The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur.
		+	J Biol Chem 278(5):3265-74</ref>
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 {|{{Prettytable}} align = 'right' width = '200px'
 |-
-|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=S000005427 YOL066C]
+|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://www.yeastgenome.org/cgi-bin/locus.pl?dbid=S000005427 YOL066C]
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 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name'''         ||''RIB2 ''

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 {|{{Prettytable}} align = 'right' width = '200px'
 |-
-|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=YOL066C YOL066C]
+|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=S000005427 YOL066C]
 |-
 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name'''         ||''RIB2 ''
@@ Line 14: / Line 14: @@
 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates'''
 |nowrap| Chr XV:204471..202696
 |}
 <br>
-'''Description of {{PAGENAME}}:''' DRAP deaminase, catalyzes the third step of the riboflavin biosynthesis pathway; cytoplasmic tRNA pseudouridine synthase involved in pseudouridylation of cytoplasmic tRNAs at position 32<ref name='S000080014'>Behm-Ansmant I, et al. (2004) Pseudouridylation at position 32 of mitochondrial and cytoplasmic tRNAs requires two distinct enzymes in Saccharomyces cerevisiae. J Biol Chem 279(51):52998-3006 {{SGDpaper|S000080014}} PMID 15466869</ref><ref name='S000072829'>Urban A, et al. (2003) Optimisation of expression and purification of the recombinant Yol066 (Rib2) protein from Saccharomyces cerevisiae. J Chromatogr B Analyt Technol Biomed Life Sci 786(1-2):187-95 {{SGDpaper|S000072829}} PMID 12651014</ref><ref name='S000054618'>Richter G, et al. (1997) Biosynthesis of riboflavin: characterization of the bifunctional deaminase-reductase of Escherichia coli and Bacillus subtilis. J Bacteriol 179(6):2022-8
+'''Description of YOL066C:''' DRAP deaminase, catalyzes the third step of the riboflavin biosynthesis pathway; cytoplasmic tRNA pseudouridine synthase involved in pseudouridylation of cytoplasmic tRNAs at position 32<ref name='S000080014'>Behm-Ansmant I, et al. (2004) Pseudouridylation at position 32 of mitochondrial and cytoplasmic tRNAs requires two distinct enzymes in Saccharomyces cerevisiae. J Biol Chem 279(51):52998-3006 {{SGDpaper|S000080014}} PMID 15466869</ref><ref name='S000072829'>Urban A, et al. (2003) Optimisation of expression and purification of the recombinant Yol066 (Rib2) protein from Saccharomyces cerevisiae. J Chromatogr B Analyt Technol Biomed Life Sci 786(1-2):187-95 {{SGDpaper|S000072829}} PMID 12651014</ref><ref name='S000054618'>Richter G, et al. (1997) Biosynthesis of riboflavin: characterization of the bifunctional deaminase-reductase of Escherichia coli and Bacillus subtilis. J Bacteriol 179(6):2022-8
   {{SGDpaper|S000054618}} PMID 9068650</ref>
 <br>
@@ Line 37: / Line 39: @@
 J Biol Chem 278(5):3265-74</ref>
 -->
 <protect>

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 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates'''
 |nowrap| Chr XV:204471..202696
 |}
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 __TOC__
 ==Community Commentary==
 {{CommentaryHelp}}
 ==References==
 <!-- REFERENCES ARE AUTOMATICALLY GENERATED.  PLEASE DON'T EDIT THIS SECTION-->
 {{RefHelp}}