YGL131C - Revision history

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@@ Line 18: / Line 18: @@
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-'''Description of YGL131C:''' DNA binding protein with similarity to the S. pombe Snt2 protein; computational analysis suggests a role in regulation of expression of genes encoding amine transporters<ref name='S000081155'>Harbison CT, et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature 431(7004):99-104 {{SGDpaper|S000081155}} PMID 15343339</ref><ref name='S000075463'>Roguev A, et al. (2004) A comparative analysis of an orthologous proteomic environment in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe. Mol Cell Proteomics 3(2):125-32 {{SGDpaper|S000075463}} PMID 14617822</ref><ref name='S000126853'>Ward LD and Bussemaker HJ (2008) Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences. Bioinformatics 24(13):i165-71
+'''Description of YGL131C:''' DNA binding protein with similarity to the S. pombe Snt2 protein; computational analysis suggests that Snt2p is a transcription factor with a role in regulation of expression of genes encoding amine transporters<ref name='S000081155'>Harbison CT, et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature 431(7004):99-104 {{SGDpaper|S000081155}} PMID 15343339</ref><ref name='S000075463'>Roguev A, et al. (2004) A comparative analysis of an orthologous proteomic environment in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe. Mol Cell Proteomics 3(2):125-32 {{SGDpaper|S000075463}} PMID 14617822</ref><ref name='S000126853'>Ward LD and Bussemaker HJ (2008) Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences. Bioinformatics 24(13):i165-71 {{SGDpaper|S000126853}} PMID 18586710</ref><ref name='S000144437'>Yang Y, et al. (2010) Identifying cooperative transcription factors by combining ChIP-chip data and knockout data. Cell Res 20(11):1276-8
-  {{SGDpaper|S000126853}} PMID 18586710</ref>
+  {{SGDpaper|S000144437}} PMID 20975739</ref>
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 {|{{Prettytable}} align = 'right' width = '200px'
 |-
-|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=S000003099 YGL131C]
+|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://www.yeastgenome.org/cgi-bin/locus.pl?dbid=S000003099 YGL131C]
 |-
 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name'''         ||''SNT2 ''

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 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates'''
-|nowrap| Chr VII:265864..261653
+|nowrap| Chr VII:265859..261648
 |-
 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Primary SGDID'''           || S000003099

@@ Line 18: / Line 18: @@
 |}
 <br>
-'''Description of YGL131C:''' DNA binding protein with similarity to the S. pombe Snt2 protein; computational analysis suggests a role in regulation of expression of genes encoding amine transporters<ref name='S000075463'>Roguev A, et al. (2004) A comparative analysis of an orthologous proteomic environment in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe. Mol Cell Proteomics 3(2):125-32 {{SGDpaper|S000075463}} PMID 14617822</ref><ref name='S000081155'>Harbison CT, et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature 431(7004):99-104 {{SGDpaper|S000081155}} PMID 15343339</ref><ref name='S000126853'>Ward LD and Bussemaker HJ (2008) Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences. Bioinformatics 24(13):i165-71
+'''Description of YGL131C:''' DNA binding protein with similarity to the S. pombe Snt2 protein; computational analysis suggests a role in regulation of expression of genes encoding amine transporters<ref name='S000081155'>Harbison CT, et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature 431(7004):99-104 {{SGDpaper|S000081155}} PMID 15343339</ref><ref name='S000075463'>Roguev A, et al. (2004) A comparative analysis of an orthologous proteomic environment in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe. Mol Cell Proteomics 3(2):125-32 {{SGDpaper|S000075463}} PMID 14617822</ref><ref name='S000126853'>Ward LD and Bussemaker HJ (2008) Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences. Bioinformatics 24(13):i165-71
   {{SGDpaper|S000126853}} PMID 18586710</ref>
 <br>

@@ Line 18: / Line 18: @@
 |}
 <br>
-'''Description of YGL131C:''' DNA binding protein with similarity to the S. pombe Snt2 protein; computational analysis suggests a role in regulation of expression of genes encoding amine transporters<ref name='S000126853'>Ward LD and Bussemaker HJ (2008) Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences. Bioinformatics 24(13):i165-71 {{SGDpaper|S000126853}} PMID 18586710</ref><ref name='S000081155'>Harbison CT, et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature 431(7004):99-104 {{SGDpaper|S000081155}} PMID 15343339</ref><ref name='S000075463'>Roguev A, et al. (2004) A comparative analysis of an orthologous proteomic environment in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe. Mol Cell Proteomics 3(2):125-32
+'''Description of YGL131C:''' DNA binding protein with similarity to the S. pombe Snt2 protein; computational analysis suggests a role in regulation of expression of genes encoding amine transporters<ref name='S000075463'>Roguev A, et al. (2004) A comparative analysis of an orthologous proteomic environment in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe. Mol Cell Proteomics 3(2):125-32 {{SGDpaper|S000075463}} PMID 14617822</ref><ref name='S000081155'>Harbison CT, et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature 431(7004):99-104 {{SGDpaper|S000081155}} PMID 15343339</ref><ref name='S000126853'>Ward LD and Bussemaker HJ (2008) Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences. Bioinformatics 24(13):i165-71
-  {{SGDpaper|S000075463}} PMID 14617822</ref>
+  {{SGDpaper|S000126853}} PMID 18586710</ref>
 <br>
 <br>

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		+	Specifically higher expression in carbon limited chemostat cultures versus carbon excess.
		+	<ref>Boer VM, et al. (2003) The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur.
		+	J Biol Chem 278(5):3265-74</ref>
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