YDR026C - Revision history

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@@ Line 18: / Line 18: @@
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-'''Description of YDR026C:''' Protein required for rDNA silencing at NTS1; plays a role in association of Sir2p with NTS1 and in cell longevity; interacts physically with Fob1p, Sir2p, and Net1p; may interact with ribosomes, based on co-purification experiments; Myb-like DNA-binding protein that may bind to the Ter region of rDNA<ref name='S000115662'>Fleischer TC, et al. (2006) Systematic identification and functional screens of uncharacterized proteins associated with eukaryotic ribosomal complexes. Genes Dev 20(10):1294-307 {{SGDpaper|S000115662}} PMID 16702403</ref><ref name='S000148603'>Ha CW, et al. (2012) Nsi1 plays a significant role in the silencing of ribosomal DNA in Saccharomyces cerevisiae. Nucleic Acids Res () {{SGDpaper|S000148603}} PMID 22362748</ref><ref name='S000081155'>Harbison CT, et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature 431(7004):99-104 {{SGDpaper|S000081155}} PMID 15343339</ref><ref name='S000075342'>Mohanty BK and Bastia D (2004) Binding of the replication terminator protein Fob1p to the Ter sites of yeast causes polar fork arrest. J Biol Chem 279(3):1932-41
+'''Description of YDR026C:''' RNA polymerase I termination factor; binds to the rDNA terminator element and is required for efficient Pol I termination; required for rDNA silencing at NTS1; facilities the association of Sir2p with NTS1, and contributes to rDNA stability and cell longevity; interacts physically with Fob1p and RENT subunits, Sir2p and Net1p; may interact with ribosomes, based on co-purification experiments; Myb-like DNA-binding protein with similarity to Reb1p<ref name='S000115662'>Fleischer TC, et al. (2006) Systematic identification and functional screens of uncharacterized proteins associated with eukaryotic ribosomal complexes. Genes Dev 20(10):1294-307 {{SGDpaper|S000115662}} PMID 16702403</ref><ref name='S000148603'>Ha CW, et al. (2012) Nsi1 plays a significant role in the silencing of ribosomal DNA in Saccharomyces cerevisiae. Nucleic Acids Res () {{SGDpaper|S000148603}} PMID 22362748</ref><ref name='S000075342'>Mohanty BK and Bastia D (2004) Binding of the replication terminator protein Fob1p to the Ter sites of yeast causes polar fork arrest. J Biol Chem 279(3):1932-41 {{SGDpaper|S000075342}} PMID 14576157</ref><ref name='S000150213'>Reiter A, et al. (2012) The Reb1-homologue Ydr026c/Nsi1 is required for efficient RNA polymerase I termination in yeast.LID - 10.1038/emboj.2012.185 [doi] EMBO J ()
-  {{SGDpaper|S000075342}} PMID 14576157</ref>
+  {{SGDpaper|S000150213}} PMID 22805593</ref>
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 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://www.yeastgenome.org/cgi-bin/locus.pl?dbid=S000002433 YDR026C]
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-|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name'''         ||'' ''
+|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name'''         ||''NSI1 ''
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 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Aliases'''           ||'' ''
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 |}
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-'''Description of YDR026C:''' Protein of unknown function that may interact with ribosomes, based on co-purification experiments; Myb-like DNA-binding protein that may bind to the Ter region of rDNA; interacts physically with Fob1p<ref name='S000115662'>Fleischer TC, et al. (2006) Systematic identification and functional screens of uncharacterized proteins associated with eukaryotic ribosomal complexes. Genes Dev 20(10):1294-307 {{SGDpaper|S000115662}} PMID 16702403</ref><ref name='S000081155'>Harbison CT, et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature 431(7004):99-104 {{SGDpaper|S000081155}} PMID 15343339</ref><ref name='S000075342'>Mohanty BK and Bastia D (2004) Binding of the replication terminator protein Fob1p to the Ter sites of yeast causes polar fork arrest. J Biol Chem 279(3):1932-41
+'''Description of YDR026C:''' Protein required for rDNA silencing at NTS1; plays a role in association of Sir2p with NTS1 and in cell longevity; interacts physically with Fob1p, Sir2p, and Net1p; may interact with ribosomes, based on co-purification experiments; Myb-like DNA-binding protein that may bind to the Ter region of rDNA<ref name='S000115662'>Fleischer TC, et al. (2006) Systematic identification and functional screens of uncharacterized proteins associated with eukaryotic ribosomal complexes. Genes Dev 20(10):1294-307 {{SGDpaper|S000115662}} PMID 16702403</ref><ref name='S000148603'>Ha CW, et al. (2012) Nsi1 plays a significant role in the silencing of ribosomal DNA in Saccharomyces cerevisiae. Nucleic Acids Res () {{SGDpaper|S000148603}} PMID 22362748</ref><ref name='S000081155'>Harbison CT, et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature 431(7004):99-104 {{SGDpaper|S000081155}} PMID 15343339</ref><ref name='S000075342'>Mohanty BK and Bastia D (2004) Binding of the replication terminator protein Fob1p to the Ter sites of yeast causes polar fork arrest. J Biol Chem 279(3):1932-41
   {{SGDpaper|S000075342}} PMID 14576157</ref>
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 {|{{Prettytable}} align = 'right' width = '200px'
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-|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=S000002433 YDR026C]
+|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://www.yeastgenome.org/cgi-bin/locus.pl?dbid=S000002433 YDR026C]
 |-
 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name'''         ||'' ''

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 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates'''
-|nowrap| Chr IV:494266..492554
+|nowrap| Chr IV:494268..492556
 |-
 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Primary SGDID'''           || S000002433

@@ Line 18: / Line 18: @@
 |}
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-'''Description of YDR026C:''' Protein of unknown function that may interact with ribosomes, based on co-purification experiments; Myb-like DNA-binding protein that may bind to the Ter region of rDNA; interacts physically with Fob1p<ref name='S000075342'>Mohanty BK and Bastia D (2004) Binding of the replication terminator protein Fob1p to the Ter sites of yeast causes polar fork arrest. J Biol Chem 279(3):1932-41 {{SGDpaper|S000075342}} PMID 14576157</ref><ref name='S000081155'>Harbison CT, et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature 431(7004):99-104 {{SGDpaper|S000081155}} PMID 15343339</ref><ref name='S000115662'>Fleischer TC, et al. (2006) Systematic identification and functional screens of uncharacterized proteins associated with eukaryotic ribosomal complexes. Genes Dev 20(10):1294-307
+'''Description of YDR026C:''' Protein of unknown function that may interact with ribosomes, based on co-purification experiments; Myb-like DNA-binding protein that may bind to the Ter region of rDNA; interacts physically with Fob1p<ref name='S000115662'>Fleischer TC, et al. (2006) Systematic identification and functional screens of uncharacterized proteins associated with eukaryotic ribosomal complexes. Genes Dev 20(10):1294-307 {{SGDpaper|S000115662}} PMID 16702403</ref><ref name='S000081155'>Harbison CT, et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature 431(7004):99-104 {{SGDpaper|S000081155}} PMID 15343339</ref><ref name='S000075342'>Mohanty BK and Bastia D (2004) Binding of the replication terminator protein Fob1p to the Ter sites of yeast causes polar fork arrest. J Biol Chem 279(3):1932-41
-  {{SGDpaper|S000115662}} PMID 16702403</ref>
+  {{SGDpaper|S000075342}} PMID 14576157</ref>
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← Older revision		Revision as of 20:02, 21 February 2007
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		+	<!-- PLEASE ADD Community Commentary ABOVE THIS MESSAGE. See below for an example of community annotation -->
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		+	Specifically higher expression in carbon limited chemostat cultures versus carbon excess.
		+	<ref>Boer VM, et al. (2003) The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur.
		+	J Biol Chem 278(5):3265-74</ref>
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 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates'''
 |nowrap| Chr IV:494265..492553
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