YCL050C - Revision history

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@@ Line 18: / Line 18: @@
 |}
 <br>
-'''Description of YCL050C:''' Bifunctional diadenosine 5',5''-P1,P4-tetraphosphate phosphorylase (AP4A phosphorylase) and ADP sulfurylase, involved in catabolism of bis(5'-nucleosidyl) tetraphosphates; APA1 has a paralog, APA2, that arose from the whole genome duplication<ref name='S000061627'>Booth JW and Guidotti G (1995) An alleged yeast polyphosphate kinase is actually diadenosine-5', 5'-P1,P4-tetraphosphate alpha,beta-phosphorylase. J Biol Chem 270(33):19377-82 {{SGDpaper|S000061627}} PMID 7642617</ref><ref name='S000113653'>Byrne KP and Wolfe KH (2005) The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res 15(10):1456-61 {{SGDpaper|S000113653}} PMID 16169922</ref><ref name='S000052301'>Plateau P, et al. (1990) Catabolism of bis(5'-nucleosidyl) tetraphosphates in Saccharomyces cerevisiae. J Bacteriol 172(12):6892-9
+'''Description of YCL050C:''' AP4A phosphorylase; bifunctional diadenosine 5',5'''-P1,P4-tetraphosphate phosphorylase and ADP sulfurylase involved in catabolism of bis(5'-nucleosidyl) tetraphosphates; catalyzes phosphorolysis of dinucleoside oligophosphates, cleaving the substrates' alpha/beta-anhydride bond and introducing Pi into the beta-position of the corresponding NDP formed; APA1 has a paralog, APA2, that arose from the whole genome duplication<ref name='S000061627'>Booth JW and Guidotti G (1995) An alleged yeast polyphosphate kinase is actually diadenosine-5', 5'-P1,P4-tetraphosphate alpha,beta-phosphorylase. J Biol Chem 270(33):19377-82 {{SGDpaper|S000061627}} PMID 7642617</ref><ref name='S000113653'>Byrne KP and Wolfe KH (2005) The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res 15(10):1456-61 {{SGDpaper|S000113653}} PMID 16169922</ref><ref name='S000119826'>Lazewska D and Guranowski A (1990) P alpha-chiral phosphorothioate analogues of bis(5'-adenosyl)tetraphosphate (Ap4A); their enzymatic synthesis and degradation. Nucleic Acids Res 18(20):6083-8 {{SGDpaper|S000119826}} PMID 2172926</ref><ref name='S000052301'>Plateau P, et al. (1990) Catabolism of bis(5'-nucleosidyl) tetraphosphates in Saccharomyces cerevisiae. J Bacteriol 172(12):6892-9
   {{SGDpaper|S000052301}} PMID 2174863</ref>
 <br>

@@ Line 18: / Line 18: @@
 |}
 <br>
-'''Description of YCL050C:''' Diadenosine 5',5''-P1,P4-tetraphosphate phosphorylase I (AP4A phosphorylase), involved in catabolism of bis(5'-nucleosidyl) tetraphosphates; has similarity to Apa2p<ref name='S000061627'>Booth JW and Guidotti G (1995) An alleged yeast polyphosphate kinase is actually diadenosine-5', 5'-P1,P4-tetraphosphate alpha,beta-phosphorylase. J Biol Chem 270(33):19377-82 {{SGDpaper|S000061627}} PMID 7642617</ref><ref name='S000052301'>Plateau P, et al. (1990) Catabolism of bis(5'-nucleosidyl) tetraphosphates in Saccharomyces cerevisiae. J Bacteriol 172(12):6892-9
+'''Description of YCL050C:''' Bifunctional diadenosine 5',5''-P1,P4-tetraphosphate phosphorylase (AP4A phosphorylase) and ADP sulfurylase, involved in catabolism of bis(5'-nucleosidyl) tetraphosphates; APA1 has a paralog, APA2, that arose from the whole genome duplication<ref name='S000061627'>Booth JW and Guidotti G (1995) An alleged yeast polyphosphate kinase is actually diadenosine-5', 5'-P1,P4-tetraphosphate alpha,beta-phosphorylase. J Biol Chem 270(33):19377-82 {{SGDpaper|S000061627}} PMID 7642617</ref><ref name='S000113653'>Byrne KP and Wolfe KH (2005) The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res 15(10):1456-61 {{SGDpaper|S000113653}} PMID 16169922</ref><ref name='S000052301'>Plateau P, et al. (1990) Catabolism of bis(5'-nucleosidyl) tetraphosphates in Saccharomyces cerevisiae. J Bacteriol 172(12):6892-9
   {{SGDpaper|S000052301}} PMID 2174863</ref>
 <br>

@@ Line 4: / Line 4: @@
 {|{{Prettytable}} align = 'right' width = '200px'
 |-
-|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=S000000555 YCL050C]
+|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://www.yeastgenome.org/cgi-bin/locus.pl?dbid=S000000555 YCL050C]
 |-
 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name'''         ||''APA1 ''

@@ Line 18: / Line 18: @@
 |}
 <br>
-'''Description of YCL050C:''' Diadenosine 5',5''-P1,P4-tetraphosphate phosphorylase I (AP4A phosphorylase), involved in catabolism of bis(5'-nucleosidyl) tetraphosphates; has similarity to Apa2p<ref name='S000052301'>Plateau P, et al. (1990) Catabolism of bis(5'-nucleosidyl) tetraphosphates in Saccharomyces cerevisiae. J Bacteriol 172(12):6892-9 {{SGDpaper|S000052301}} PMID 2174863</ref><ref name='S000061627'>Booth JW and Guidotti G (1995) An alleged yeast polyphosphate kinase is actually diadenosine-5', 5'-P1,P4-tetraphosphate alpha,beta-phosphorylase. J Biol Chem 270(33):19377-82
+'''Description of YCL050C:''' Diadenosine 5',5''-P1,P4-tetraphosphate phosphorylase I (AP4A phosphorylase), involved in catabolism of bis(5'-nucleosidyl) tetraphosphates; has similarity to Apa2p<ref name='S000061627'>Booth JW and Guidotti G (1995) An alleged yeast polyphosphate kinase is actually diadenosine-5', 5'-P1,P4-tetraphosphate alpha,beta-phosphorylase. J Biol Chem 270(33):19377-82 {{SGDpaper|S000061627}} PMID 7642617</ref><ref name='S000052301'>Plateau P, et al. (1990) Catabolism of bis(5'-nucleosidyl) tetraphosphates in Saccharomyces cerevisiae. J Bacteriol 172(12):6892-9
-  {{SGDpaper|S000061627}} PMID 7642617</ref>
+  {{SGDpaper|S000052301}} PMID 2174863</ref>
 <br>
 <br>

@@ Line 18: / Line 18: @@
 |}
 <br>
-'''Description of YCL050C:''' Diadenosine 5',5''-P1,P4-tetraphosphate phosphorylase I (AP4A phosphorylase), involved in catabolism of bis(5'-nucleosidyl) tetraphosphates; has similarity to Apa2p<ref name='S000061627'>Booth JW and Guidotti G (1995) An alleged yeast polyphosphate kinase is actually diadenosine-5', 5'-P1,P4-tetraphosphate alpha,beta-phosphorylase. J Biol Chem 270(33):19377-82 {{SGDpaper|S000061627}} PMID 7642617</ref><ref name='S000052301'>Plateau P, et al. (1990) Catabolism of bis(5'-nucleosidyl) tetraphosphates in Saccharomyces cerevisiae. J Bacteriol 172(12):6892-9
+'''Description of YCL050C:''' Diadenosine 5',5''-P1,P4-tetraphosphate phosphorylase I (AP4A phosphorylase), involved in catabolism of bis(5'-nucleosidyl) tetraphosphates; has similarity to Apa2p<ref name='S000052301'>Plateau P, et al. (1990) Catabolism of bis(5'-nucleosidyl) tetraphosphates in Saccharomyces cerevisiae. J Bacteriol 172(12):6892-9 {{SGDpaper|S000052301}} PMID 2174863</ref><ref name='S000061627'>Booth JW and Guidotti G (1995) An alleged yeast polyphosphate kinase is actually diadenosine-5', 5'-P1,P4-tetraphosphate alpha,beta-phosphorylase. J Biol Chem 270(33):19377-82
- {{SGDpaper|S000052301}} PMID 2174863</ref>
+ {{SGDpaper|S000061627}} PMID 7642617</ref>
 <br>
 <br>

@@ Line 4: / Line 4: @@
 {|{{Prettytable}} align = 'right' width = '200px'
 |-
-|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=YCL050C YCL050C]
+|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=S000000555 YCL050C]
 |-
 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name'''         ||''APA1 ''
@@ Line 14: / Line 14: @@
 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates'''
 |nowrap| Chr III:38801..37836
 |}
 <br>
-'''Description of {{PAGENAME}}:''' Diadenosine 5',5''-P1,P4-tetraphosphate phosphorylase I (AP4A phosphorylase), involved in catabolism of bis(5'-nucleosidyl) tetraphosphates; has similarity to Apa2p<ref name='S000061627'>Booth JW and Guidotti G (1995) An alleged yeast polyphosphate kinase is actually diadenosine-5', 5&quot;'-P1,P4-tetraphosphate alpha,beta-phosphorylase. J Biol Chem 270(33):19377-82 {{SGDpaper|S000061627}} PMID 7642617</ref><ref name='S000052301'>Plateau P, et al. (1990) Catabolism of bis(5'-nucleosidyl) tetraphosphates in Saccharomyces cerevisiae. J Bacteriol 172(12):6892-9
+'''Description of YCL050C:''' Diadenosine 5',5''-P1,P4-tetraphosphate phosphorylase I (AP4A phosphorylase), involved in catabolism of bis(5'-nucleosidyl) tetraphosphates; has similarity to Apa2p<ref name='S000061627'>Booth JW and Guidotti G (1995) An alleged yeast polyphosphate kinase is actually diadenosine-5', 5&quot;'-P1,P4-tetraphosphate alpha,beta-phosphorylase. J Biol Chem 270(33):19377-82 {{SGDpaper|S000061627}} PMID 7642617</ref><ref name='S000052301'>Plateau P, et al. (1990) Catabolism of bis(5'-nucleosidyl) tetraphosphates in Saccharomyces cerevisiae. J Bacteriol 172(12):6892-9
   {{SGDpaper|S000052301}} PMID 2174863</ref>
 <br>
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 J Biol Chem 278(5):3265-74</ref>
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		+	<!-- PLEASE ADD Community Commentary ABOVE THIS MESSAGE. See below for an example of community annotation -->
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		+	Specifically higher expression in carbon limited chemostat cultures versus carbon excess.
		+	<ref>Boer VM, et al. (2003) The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur.
		+	J Biol Chem 278(5):3265-74</ref>
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