SGD Newsletter, April 2018 - Revision history

Pcng: /* 1011 Genomes at SGD */

2018-05-09T22:25:13Z

‎1011 Genomes at SGD

Pcng: /* 1011 Genomes at SGD */

2018-05-09T22:24:50Z

‎1011 Genomes at SGD

Pcng: /* 1011 Genomes at SGD */

2018-05-09T22:24:29Z

‎1011 Genomes at SGD

Sage: /* The ALLIANCE of Genome Resources */

2018-04-30T18:54:48Z

‎The ALLIANCE of Genome Resources

Sage: /* 1011 Genomes at SGD */

2018-04-30T17:49:21Z

‎1011 Genomes at SGD

Sage: /* The ALLIANCE of Genome Resources */

2018-04-30T17:36:45Z

‎The ALLIANCE of Genome Resources

Sage: /* The ALLIANCE of Genome Resources */

2018-04-30T17:24:30Z

‎The ALLIANCE of Genome Resources

Sage: /* The ALLIANCE of Genome Resources */

2018-04-30T17:24:17Z

‎The ALLIANCE of Genome Resources

Sage: /* The ALLIANCE of Genome Resources */

2018-04-30T17:22:10Z

‎The ALLIANCE of Genome Resources

Sage: /* The ALLIANCE of Genome Resources */

2018-04-30T17:21:50Z

‎The ALLIANCE of Genome Resources

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 <br><br>
 You can also read more about this exciting new data addition on our [https://www.yeastgenome.org/blog/out-of-china-changing-our-views-on-the-origins-of-budding-yeast blog!]<br><br>
 <br>
 ==Yeast Genetics Meeting 2018==

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 <br><br><br>
 SGD is happy to announce that in conjunction with the authors and publishers, we are hosting the datasets from the paper at this [https://www.yeastgenome.org/search?q=PMID%3A29643504&category=download&status=Active SGD download site] (see image below, [https://www.yeastgenome.org/search?q=PMID%3A29643504&category=download&status=Active www.yeastgenome.org/1011-yeast-genomes]). These datasets include: the actual genome sequences of the 1,011 isolates; the list of 4,940 common “core” ORFs plus 2,856 ORFs that are variable within the population (together these make up the “pangenome”); copy number variation (CNV) data; phenotyping data for 36 conditions; SNPs and indels relative to the S288C genome; and much more. We hope that the easy availability of these large datasets will be useful to many yeast (and non-yeast) researchers, and as the authors say, will help to “guide future population genomics and genotype–phenotype studies in this classic model system.”
-<br><br><br>
+<br><br>
 You can also read more about this exciting new data addition on our [https://www.yeastgenome.org/blog/out-of-china-changing-our-views-on-the-origins-of-budding-yeast blog!]<br><br>
-<br><br>
+<br>
-[[File:1011genomes_screenshot.jpg|700px|link=https://www.yeastgenome.org/search?category=download&format=TSV&page=0&q=PMID%3A29643504&status=Active]]
+[[File:1011genomes_screenshot.jpg|1000px|link=https://www.yeastgenome.org/search?category=download&format=TSV&page=0&q=PMID%3A29643504&status=Active]]
 <br><br><br>

@@ Line 12: / Line 12: @@
 You can also read more about this exciting new data addition on our [https://www.yeastgenome.org/blog/out-of-china-changing-our-views-on-the-origins-of-budding-yeast blog!]<br><br>
 <br><br>
-[[File:Downloads_1011_Genomes_SS.jpeg|700px|link=https://www.yeastgenome.org/search?category=download&format=TSV&page=0&q=PMID%3A29643504&status=Active]]
+[[File:1011genomes_screenshot.jpg|700px|link=https://www.yeastgenome.org/search?category=download&format=TSV&page=0&q=PMID%3A29643504&status=Active]]
 <br><br><br>

@@ Line 43: / Line 43: @@
 ==The ALLIANCE of Genome Resources==
 [[File:alliance_logo.png|link=www.alliancegenome.org |thumb|left|upright=1.1]]
-In December 2017 the Alliance of Genome Resources (the Alliance) released the Alliance of Genome Resources website 1.0 ([http://www.alliancegenome.org www.alliancegenome.org]). The Alliance provides unified access to comparative genetics and genomics data from the Alliance data resources. The focus of the Alliance is to facilitate the use of these data towards better understanding of human biology and disease as well as providing cross-species comparative information.
+In October 2017 the Alliance of Genome Resources (the Alliance) released the Alliance of Genome Resources website 1.0 ([http://www.alliancegenome.org www.alliancegenome.org]). The Alliance provides unified access to comparative genetics and genomics data from the Alliance data resources. The focus of the Alliance is to facilitate the use of these data towards better understanding of human biology and disease as well as providing cross-species comparative information.
 As the integration of the MOD and GO teams progress with inclusion of additional data, the vision going forward includes the incorporation of other model organism information resources and other bioinformatic nodes within a common data platform, facilitating data recovery, analysis, and integration.<br>

@@ Line 12: / Line 12: @@
 You can also read more about this exciting new data addition on our [https://www.yeastgenome.org/blog/out-of-china-changing-our-views-on-the-origins-of-budding-yeast blog!]<br><br>
 <br><br>
-[[File:Downloads_1011_Genomes_SS.jpeg|700px|link=https://www.yeastgenome.org/search?q=PMID%3A29643504&category=download&status=Active]]
+[[File:Downloads_1011_Genomes_SS.jpeg|700px|link=https://www.yeastgenome.org/search?category=download&format=TSV&page=0&q=PMID%3A29643504&status=Active]]
 <br><br><br>

@@ Line 47: / Line 47: @@
 As the integration of the MOD and GO teams progress with inclusion of additional data, the vision going forward includes the incorporation of other model organism information resources and other bioinformatic nodes within a common data platform, facilitating data recovery, analysis, and integration.<br>
 <br>
-As one of the founding members of the Alliance, SGD biocurators and programmers are actively working to incorporate new data to the Alliance including expression and interaction data. <br>
+As one of the founding members of the Alliance, SGD biocurators and programmers are actively working to incorporate new data to the Alliance, including expression and interaction data. <br>
 <br><br>
 For more updates and announcements on the Alliance, check out the Alliance [https://www.facebook.com/alliancegenome/ Facebook page], or check out our twitter page [https://twitter.com/alliancegenome @alliancegenome].

@@ Line 42: / Line 42: @@
 ==The ALLIANCE of Genome Resources==
-[[File:alliance_logo.png|link=www.alliancegenome.org |thumb|left|upright=1.0]]
+[[File:alliance_logo.png|link=www.alliancegenome.org |thumb|left|upright=1.2]]
 In December 2017 the Alliance of Genome Resources (the Alliance) released the Alliance of Genome Resources website 1.0 ([http://www.alliancegenome.org www.alliancegenome.org]). The Alliance provides unified access to comparative genetics and genomics data from the Alliance data resources. The focus of the Alliance is to facilitate the use of these data towards better understanding of human biology and disease as well as providing cross-species comparative information.