RDN5-6 - Revision history

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 {|{{Prettytable}} align = 'right' width = '200px'
 |-
-|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=S000029711 RDN5-6]
+|valign="top" nowrap bgcolor="{{SGDblue}}"| '''Systematic name''' || [http://www.yeastgenome.org/cgi-bin/locus.pl?dbid=S000029711 RDN5-6]
 |-
 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Gene name'''         ||''RDN5-6 ''

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 |}
 <br>
-'''Description of RDN5-6:''' Variant 5S ribosomal rRNA (5S rRNA) gene; located at a site distal to the RDN1 locus; identical in sequence to RDN5-1, but is missing sequences downstream of the 5S rRNA transcript<ref name='S000045219'>Camier S, et al. (1995) The only essential function of TFIIIA in yeast is the transcription of 5S rRNA genes. Proc Natl Acad Sci U S A 92(20):9338-42 {{SGDpaper|S000045219}} PMID 7568129</ref><ref name='S000128766'>Dieci G, et al. (2009) Positive modulation of RNA polymerase III transcription by ribosomal proteins. Biochem Biophys Res Commun 379(2):489-93 {{SGDpaper|S000128766}} PMID 19116144</ref><ref name='S000044861'>Dinman JD and Wickner RB (1995) 5 S rRNA is involved in fidelity of translational reading frame. Genetics 141(1):95-105 {{SGDpaper|S000044861}} PMID 8536994</ref><ref name='S000060083'>Johnston M, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XII. Nature 387(6632 Suppl):87-90 {{SGDpaper|S000060083}} PMID 9169871</ref><ref name='S000075498'>Michael WM and Dreyfuss G (1996) Distinct domains in ribosomal protein L5 mediate 5 S rRNA binding and nucleolar localization. J Biol Chem 271(19):11571-4
+'''Description of RDN5-6:''' Variant 5S ribosomal rRNA (5S rRNA) gene; located at a site distal to the RDN1 locus<ref name='S000045219'>Camier S, et al. (1995) The only essential function of TFIIIA in yeast is the transcription of 5S rRNA genes. Proc Natl Acad Sci U S A 92(20):9338-42 {{SGDpaper|S000045219}} PMID 7568129</ref><ref name='S000128766'>Dieci G, et al. (2009) Positive modulation of RNA polymerase III transcription by ribosomal proteins. Biochem Biophys Res Commun 379(2):489-93 {{SGDpaper|S000128766}} PMID 19116144</ref><ref name='S000044861'>Dinman JD and Wickner RB (1995) 5 S rRNA is involved in fidelity of translational reading frame. Genetics 141(1):95-105 {{SGDpaper|S000044861}} PMID 8536994</ref><ref name='S000060083'>Johnston M, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XII. Nature 387(6632 Suppl):87-90 {{SGDpaper|S000060083}} PMID 9169871</ref><ref name='S000075498'>Michael WM and Dreyfuss G (1996) Distinct domains in ribosomal protein L5 mediate 5 S rRNA binding and nucleolar localization. J Biol Chem 271(19):11571-4
   {{SGDpaper|S000075498}} PMID 8626719</ref>
 <br>

@@ Line 18: / Line 18: @@
 |}
 <br>
-'''Description of RDN5-6:''' 5S ribosomal RNA (5S rRNA); component of the large (60S) ribosomal subunit; localized to the nucleolus via interaction with Rpl5p; may play a role in translational frame fidelity; transcription is mediated by PolIII and activated by TFIIIA and TFIIIE<ref name='S000045219'>Camier S, et al. (1995) The only essential function of TFIIIA in yeast is the transcription of 5S rRNA genes. Proc Natl Acad Sci U S A 92(20):9338-42 {{SGDpaper|S000045219}} PMID 7568129</ref><ref name='S000128766'>Dieci G, et al. (2009) Positive modulation of RNA polymerase III transcription by ribosomal proteins. Biochem Biophys Res Commun 379(2):489-93 {{SGDpaper|S000128766}} PMID 19116144</ref><ref name='S000044861'>Dinman JD and Wickner RB (1995) 5 S rRNA is involved in fidelity of translational reading frame. Genetics 141(1):95-105 {{SGDpaper|S000044861}} PMID 8536994</ref><ref name='S000075498'>Michael WM and Dreyfuss G (1996) Distinct domains in ribosomal protein L5 mediate 5 S rRNA binding and nucleolar localization. J Biol Chem 271(19):11571-4
+'''Description of RDN5-6:''' Variant 5S ribosomal rRNA (5S rRNA) gene; located at a site distal to the RDN1 locus; identical in sequence to RDN5-1, but is missing sequences downstream of the 5S rRNA transcript<ref name='S000045219'>Camier S, et al. (1995) The only essential function of TFIIIA in yeast is the transcription of 5S rRNA genes. Proc Natl Acad Sci U S A 92(20):9338-42 {{SGDpaper|S000045219}} PMID 7568129</ref><ref name='S000128766'>Dieci G, et al. (2009) Positive modulation of RNA polymerase III transcription by ribosomal proteins. Biochem Biophys Res Commun 379(2):489-93 {{SGDpaper|S000128766}} PMID 19116144</ref><ref name='S000044861'>Dinman JD and Wickner RB (1995) 5 S rRNA is involved in fidelity of translational reading frame. Genetics 141(1):95-105 {{SGDpaper|S000044861}} PMID 8536994</ref><ref name='S000060083'>Johnston M, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XII. Nature 387(6632 Suppl):87-90 {{SGDpaper|S000060083}} PMID 9169871</ref><ref name='S000075498'>Michael WM and Dreyfuss G (1996) Distinct domains in ribosomal protein L5 mediate 5 S rRNA binding and nucleolar localization. J Biol Chem 271(19):11571-4
   {{SGDpaper|S000075498}} PMID 8626719</ref>
 <br>

@@ Line 18: / Line 18: @@
 |}
 <br>
-'''Description of RDN5-6:''' 5S ribosomal RNA, component of the large (60S) ribosomal subunit; localized to the nucleolus via interaction with Rpl5p; may play a role in translational frame fidelity; transcription is mediated by PolIII and activated by TFIIIA and TFIIIE<ref name='S000045219'>Camier S, et al. (1995) The only essential function of TFIIIA in yeast is the transcription of 5S rRNA genes. Proc Natl Acad Sci U S A 92(20):9338-42 {{SGDpaper|S000045219}} PMID 7568129</ref><ref name='S000128766'>Dieci G, et al. (2009) Positive modulation of RNA polymerase III transcription by ribosomal proteins. Biochem Biophys Res Commun 379(2):489-93 {{SGDpaper|S000128766}} PMID 19116144</ref><ref name='S000044861'>Dinman JD and Wickner RB (1995) 5 S rRNA is involved in fidelity of translational reading frame. Genetics 141(1):95-105 {{SGDpaper|S000044861}} PMID 8536994</ref><ref name='S000075498'>Michael WM and Dreyfuss G (1996) Distinct domains in ribosomal protein L5 mediate 5 S rRNA binding and nucleolar localization. J Biol Chem 271(19):11571-4
+'''Description of RDN5-6:''' 5S ribosomal RNA (5S rRNA); component of the large (60S) ribosomal subunit; localized to the nucleolus via interaction with Rpl5p; may play a role in translational frame fidelity; transcription is mediated by PolIII and activated by TFIIIA and TFIIIE<ref name='S000045219'>Camier S, et al. (1995) The only essential function of TFIIIA in yeast is the transcription of 5S rRNA genes. Proc Natl Acad Sci U S A 92(20):9338-42 {{SGDpaper|S000045219}} PMID 7568129</ref><ref name='S000128766'>Dieci G, et al. (2009) Positive modulation of RNA polymerase III transcription by ribosomal proteins. Biochem Biophys Res Commun 379(2):489-93 {{SGDpaper|S000128766}} PMID 19116144</ref><ref name='S000044861'>Dinman JD and Wickner RB (1995) 5 S rRNA is involved in fidelity of translational reading frame. Genetics 141(1):95-105 {{SGDpaper|S000044861}} PMID 8536994</ref><ref name='S000075498'>Michael WM and Dreyfuss G (1996) Distinct domains in ribosomal protein L5 mediate 5 S rRNA binding and nucleolar localization. J Biol Chem 271(19):11571-4
   {{SGDpaper|S000075498}} PMID 8626719</ref>
 <br>

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 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Coordinates'''
-|nowrap| Chr XII:489350..489470
+|nowrap| Chr XII:489349..489469
 |-
 |valign="top" nowrap bgcolor="{{SGDblue}}"| '''Primary SGDID'''           || S000029711

← Older revision		Revision as of 20:02, 21 February 2007
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		+	<!-- PLEASE ADD Community Commentary ABOVE THIS MESSAGE. See below for an example of community annotation -->
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		+	Specifically higher expression in carbon limited chemostat cultures versus carbon excess.
		+	<ref>Boer VM, et al. (2003) The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur.
		+	J Biol Chem 278(5):3265-74</ref>
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