https://wiki.yeastgenome.org/index.php?action=history&feed=atom&title=MochiView 2026-09-19T13:44:46Z Revision history for this page on the wiki MediaWiki 1.31.14 https://wiki.yeastgenome.org/index.php?title=MochiView&diff=227952&oldid=prev 2010-04-23T00:13:45Z

<p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 00:13, 23 April 2010</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l10" >Line 10:</td> <td colspan="2" class="diff-lineno">Line 10:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>takes ~10 minutes to download the software and install the necessary</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>takes ~10 minutes to download the software and install the necessary</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>genome sequence and gene information (using the GFF files stored on</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>genome sequence and gene information (using the GFF files stored on</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[http://downloads.yeastgenome.org/chromosomal_feature SGD],[http://www.<del class="diffchange diffchange-inline">cgd</del>.org<del class="diffchange diffchange-inline">/</del>/download/gff/ CGD], or [http://www.aspgd.org/download/gff/ AspGD]).&#160; Visit the MochiView website to view:</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[http://downloads.yeastgenome.org/chromosomal_feature SGD],[http://www.<ins class="diffchange diffchange-inline">candidagenome</ins>.org/download/gff/ CGD], or [http://www.aspgd.org/download/gff/ AspGD]).&#160; Visit the MochiView website to view:</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[http://johnsonlab.ucsf.edu/sj/mochiview-screenshots/ Demo videos]</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[http://johnsonlab.ucsf.edu/sj/mochiview-screenshots/ Demo videos]</div></td></tr> </table>

Papamsurf https://wiki.yeastgenome.org/index.php?title=MochiView&diff=227951&oldid=prev 2010-04-23T00:13:03Z

<p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 00:13, 23 April 2010</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1" >Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[http://johnsonlab.ucsf.edu/sj/mochiview-start/ Link to MochiView website]</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[http://johnsonlab.ucsf.edu/sj/mochiview-start/ Link to MochiView website]</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">An announcement from </del>Oliver Homann<del class="diffchange diffchange-inline">:&#160; &lt;br&gt;&lt;br&gt;</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">''(Page created by </ins>Oliver Homann<ins class="diffchange diffchange-inline">, author of MochiView)''</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">Hello, I'd like to alert the community to the availability of </del>a <del class="diffchange diffchange-inline">new</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">MochiView is </ins>a platform-independent Java genome browser and motif analysis software.&#160; Hopefully some of you may find it useful.&#160; The</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>platform-independent Java genome browser and motif analysis software</div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">called MochiView</del>.&#160; Hopefully some of you may find it useful.&#160; The</div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>software was originally designed for visualization and analysis of</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>software was originally designed for visualization and analysis of</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>''C. albicans'' ChIP-Chip data, but has also been utilized for pure</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>''C. albicans'' ChIP-Chip data, but has also been utilized for pure</div></td></tr> </table>

Papamsurf https://wiki.yeastgenome.org/index.php?title=MochiView&diff=227950&oldid=prev 2010-04-23T00:10:13Z

<p>Created page with &#039;*[http://johnsonlab.ucsf.edu/sj/mochiview-start/ Link to MochiView website] An announcement from Oliver Homann: &lt;br&gt;&lt;br&gt; Hello, I&#039;d like to alert the community to the availabi…&#039;</p> <p><b>New page</b></p><div>*[http://johnsonlab.ucsf.edu/sj/mochiview-start/ Link to MochiView website]<br /> <br /> An announcement from Oliver Homann: &lt;br&gt;&lt;br&gt;<br /> <br /> Hello, I'd like to alert the community to the availability of a new<br /> platform-independent Java genome browser and motif analysis software<br /> called MochiView. Hopefully some of you may find it useful. The<br /> software was originally designed for visualization and analysis of<br /> ''C. albicans'' ChIP-Chip data, but has also been utilized for pure<br /> motif analysis as well as with ChIP-Seq/RNA-Seq data and with multiple<br /> additional genomes, including ''S. cerevisiae'' and humans. It<br /> takes ~10 minutes to download the software and install the necessary<br /> genome sequence and gene information (using the GFF files stored on<br /> [http://downloads.yeastgenome.org/chromosomal_feature SGD],[http://www.cgd.org//download/gff/ CGD], or [http://www.aspgd.org/download/gff/ AspGD]). Visit the MochiView website to view:<br /> <br /> *[http://johnsonlab.ucsf.edu/sj/mochiview-screenshots/ Demo videos]<br /> <br /> *[http://johnsonlab.ucsf.edu/sj/mochiview-features/ List of features]<br /> <br /> *[http://johnsonlab.ucsf.edu/sj/mochiview-software/ Software download]<br /> <br /> *[http://johnsonlab.ucsf.edu/sj/mochiview-genome-downloads/ Genome import instructions]<br /> <br /> *[http://johnsonlab.ucsf.edu/sj/mochiview-motif_libraries/ Motif library downloads]<br /> <br /> Contributions to the MochiView motif libraries would be appreciated! [http://johnsonlab.ucsf.edu/sj/mochiview-contact/ Contact us] with suggestions, or to join the MochiView mailing list.</div>

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