Chromosome I History - Revision history

Pcng at 23:42, 2 October 2019

2019-10-02T23:42:03Z

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Pcng: /* Sequence Changes */

2019-10-02T15:48:23Z

‎Sequence Changes

Pcng: /* Sequence Changes */

2019-09-26T16:18:20Z

‎Sequence Changes

Pcng at 21:38, 23 September 2019

2019-09-23T21:38:26Z

Pcng: /* Annotation Changes */

2019-06-27T19:46:16Z

‎Annotation Changes

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Pcng at 19:04, 27 June 2019

2019-06-27T19:04:48Z

Pcng: /* Sequence Changes */

2019-06-27T18:37:20Z

‎Sequence Changes

Pcng: /* Sequence Changes */

2019-06-26T23:17:07Z

‎Sequence Changes

Pcng: Created page with "=Sequence Changes= {| class="wikitable sortable" style="border-spacing: 2px; border: 1px solid darkgray;" ! scope="col" | Date !! scope="col" class="unsortable" | Affected Fe..."

2019-06-26T23:12:49Z

Created page with "=Sequence Changes= {| class="wikitable sortable" style="border-spacing: 2px; border: 1px solid darkgray;" ! scope="col" | Date !! scope="col" class="unsortable" | Affected Fe..."

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@@ Line 529: / Line 529: @@
 <pre>638     ATACCGTCTTCAATGGACAACAAAGAGAC 610     new sequence, coordinates relative to SSA1 coding region
          ||||||||||||||| |||||||||||||
-|-
+  ATACCGTCTTCAATGAACAACAAAGAGAC 140824  old sequence, chromosomal coordinates
    TGGAAAAGATCTCGGACTTCTTTGTTGGAATGGTAGAGTTT 1239    new sequence, coordinates relative to SSA1 coding region
         |||||||||||||| |||||||||||| |||||||||||||
-|-
+TGGAAAAGATCTCGAACTTCTTTGTTGAAATGGTAGAGTTT 140195  old sequence, chromosomal coordinates</pre>
 Slater MR and Craig EA (1989) The SSA1 and SSA2 genes of the yeast Saccharomyces cerevisiae. Nucleic Acids Res 17(2):805-6
 |-

@@ Line 1: / Line 1: @@
 =Sequence Changes=
-{| class="wikitable sortable" style="border-spacing: 2px; border: 1px solid darkgray;"
+{| class="wikitable" style="border-spacing: 2px; border: 1px solid darkgray;"
 ! Date  !! Affected Features !! Start Coordinate of Change !! End Coordinate of Change !! Type of Change !! Old Sequence !! New Sequence
 |-
@@ Line 664: / Line 664: @@
 New: 203876 CAATTCTATCAGTAGGTGGTGCAACCGCGTTCAACTGTTGTGCTCAACAGCAACCGCCGA 203935</pre>
 |}
 =Annotation Changes=
 {| class="wikitable" style="border-spacing: 2px; border: 1px solid darkgray;"

@@ Line 1: / Line 1: @@
 =Sequence Changes=
-{| class="wikitable" style="border-spacing: 2px; border: 1px solid darkgray;"
+{| class="wikitable sortable" style="border-spacing: 2px; border: 1px solid darkgray;"
 ! Date  !! Affected Features !! Start Coordinate of Change !! End Coordinate of Change !! Type of Change !! Old Sequence !! New Sequence
 |-

← Older revision		Revision as of 19:04, 27 June 2019
Line 664:		Line 664:
	New: 203876 CAATTCTATCAGTAGGTGGTGCAACCGCGTTCAACTGTTGTGCTCAACAGCAACCGCCGA 203935</pre>		New: 203876 CAATTCTATCAGTAGGTGGTGCAACCGCGTTCAACTGTTGTGCTCAACAGCAACCGCCGA 203935</pre>
	\|}		\|}
		+	=Annotation Changes=

@@ Line 1: / Line 1: @@
 =Sequence Changes=
-{| class="wikitable sortable" style="border-spacing: 2px; border: 1px solid darkgray;"
+{| class="wikitable" style="border-spacing: 2px; border: 1px solid darkgray;"
-! scope="col" | Date  !! scope="col" class="unsortable" | Affected Features !! scope="col" class="unsortable" | Start Coordinate of Change !! scope="col" class="unsortable" | End Coordinate of Change !! scope="col" class="unsortable" | Type of Change !! scope="col" class="unsortable" | Old Sequence !! scope="col" class="unsortable" | New Sequence
+! Date  !! Affected Features !! Start Coordinate of Change !! End Coordinate of Change !! Type of Change !! Old Sequence !! New Sequence
 |-
 |2011-02-03||[https://www.yeastgenome.org/locus/YAL013W YAL013W]||130485||130486||Deletion||GT||

@@ Line 275: / Line 275: @@
 Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
 |-
-|2011-02-03||ARS110, [https://www.yeastgenome.org/locus/YAR019W-A YAR019W-A]||175378||175378||Substitution||T||C
+|2011-02-03||[https://www.yeastgenome.org/locus/ARS110 ARS110], [https://www.yeastgenome.org/locus/YAR019W-A YAR019W-A]||175378||175378||Substitution||T||C
 |-
 | || ||175371||175371||Deletion||T||
 |-
-| || colspan="6" |A single nucleotide deletion and a single nucleotide substitution were made in the intergenic region between ORF [https://www.yeastgenome.org/locus/YAR019W-A YAR019W-A] and ARS110.
+| || colspan="6" |A single nucleotide deletion and a single nucleotide substitution were made in the intergenic region between ORF [https://www.yeastgenome.org/locus/YAR019W-A YAR019W-A] and [https://www.yeastgenome.org/locus/ARS110 ARS110].
 <pre>New    175355  GCCCAATTTTGATTATGCC-TCTTTTCCATACACGACGCCAGAGGACATTATTACATTAC  175413
                 ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
@@ Line 285: / Line 285: @@
 Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
 |-
-|2011-02-03||ARS106, [https://www.yeastgenome.org/locus/YAL038W YAL038W]||70874||70874||Substitution||A||G
+|2011-02-03||[https://www.yeastgenome.org/locus/ARS106 ARS106], [https://www.yeastgenome.org/locus/YAL038W YAL038W]||70874||70874||Substitution||A||G
 |-
 | || ||70794||70794||Substitution||C||G
 |-
-| || colspan="6" |Two separate single nucleotide substitutions were made in the intergenic region between ARS106 and ORF CDC19/[https://www.yeastgenome.org/locus/YAL038W YAL038W].
+| || colspan="6" |Two separate single nucleotide substitutions were made in the intergenic region between [https://www.yeastgenome.org/locus/ARS106 ARS106] and ORF CDC19/[https://www.yeastgenome.org/locus/YAL038W YAL038W].
 <pre>New    70746   GGTTTTCCGACTTTATTTGAGATGACTTGAGATGTGTGTCAATGCTAGTATTTTGGAGAT  70805
                 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
@@ Line 298: / Line 298: @@
 Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
 |-
-|2011-02-03||ARS104, [https://www.yeastgenome.org/locus/YAL063C YAL063C]||28953||28953||Insertion||||T
+|2011-02-03||[https://www.yeastgenome.org/locus/ARS104 ARS104], [https://www.yeastgenome.org/locus/YAL063C YAL063C]||28953||28953||Insertion||||T
 |-
 | || ||28069||28069||Deletion||T||
 |-
-| || colspan="6" |A single nucleotide deletion and a single nucleotide insertion were made in the intergenic region between ORF FLO9/[https://www.yeastgenome.org/locus/YAL063C YAL063C] and ARS104.
+| || colspan="6" |A single nucleotide deletion and a single nucleotide insertion were made in the intergenic region between ORF FLO9/[https://www.yeastgenome.org/locus/YAL063C YAL063C] and [https://www.yeastgenome.org/locus/ARS104 ARS104].
 <pre>New    28027   GTAAATAAGAAGGAAGAACGTTATGTTATTAATGGACTTTT-AGTGTCATCGAATTTTAT  28085
                 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
@@ Line 311: / Line 311: @@
 Engel SR, et al. (2014) The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) 4(3):389-98
 |-
-|2011-02-03||[https://www.yeastgenome.org/locus/YAR023C YAR023C], tL(CAA)A||180961||180961||Insertion||||CAAA
+|2011-02-03||[https://www.yeastgenome.org/locus/YAR023C YAR023C], [https://www.yeastgenome.org/locus/SUP56 tL(CAA)A]||180961||180961||Insertion||||CAAA
 |-
-| || colspan="6" |A tetranucleotide insertion was made in the intergenic region between ORF [https://www.yeastgenome.org/locus/YAR023C YAR023C] and tRNA-Leu SUP56/tL(CAA)A.
+| || colspan="6" |A tetranucleotide insertion was made in the intergenic region between ORF [https://www.yeastgenome.org/locus/YAR023C YAR023C] and tRNA-Leu SUP56/[https://www.yeastgenome.org/locus/SUP56 tL(CAA)A].
 <pre>New    180942  TTCCCATTACAATGCCGAATAGCAAAATATGTAGTAGAACACGTACACGCATGATAATTA  181001
                 ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||