View source for Details of 2021 Reference Genome Annotation Update R64.3

The ''S. cerevisiae'' strain S288C reference genome annotation was updated in its first major update since 2014. The new genome annotation is release R64.3.1, dated 2021-04-21.  Note that the underlying genome sequence itself was not altered in any way.
__FORCETOC__
==R64.3 Annotation update summary==
This annotation update included (details in table below):
*7 new ORFs: [https://www.yeastgenome.org/locus/S000303806 OTO1/YGR227C-A], [https://www.yeastgenome.org/locus/S000303807 YHR052C-B], [https://www.yeastgenome.org/locus/S000303808 YHR054C-B], [https://www.yeastgenome.org/locus/S000303810 YJR107C-A], [https://www.yeastgenome.org/locus/S000303811 YKL104W-A], [https://www.yeastgenome.org/locus/S000303812 YLR379W-A], [https://www.yeastgenome.org/locus/S000303813 YMR008C-A]
*5 new ncRNAs: [https://www.yeastgenome.org/locus/S000303802 GAL10-ncRNA], [https://www.yeastgenome.org/locus/S000303803 TBRT/XUT_2F-154], [https://www.yeastgenome.org/locus/S000303809 SUT169], [https://www.yeastgenome.org/locus/S000303814 PHO84 lncRNA], [https://www.yeastgenome.org/locus/S000303815 GAL4 lncRNA]
*2 new uORFs for [https://www.yeastgenome.org/locus/S000003139 ROK1/YGL171W]
*1 new recombination enhancer: [https://www.yeastgenome.org/locus/S000303804 RE]
*1 new LTR: [https://www.yeastgenome.org/locus/S000303805 YELWdelta27]
*3 ORFs with shifted translation starts: [https://www.yeastgenome.org/locus/S000000792 HPA3/YEL066W], [https://www.yeastgenome.org/locus/S000003773 YJR012C], [https://www.yeastgenome.org/locus/S000005204 LTO1/YNL260C]
*1 ORF with shifted translation stop plus new intron: [https://www.yeastgenome.org/locus/S000004755 LDO45/YMR147W]
*Changed feature_type (and SO_term) for non-transcribed spacers: [https://www.yeastgenome.org/locus/S000029714 NTS1-2], [https://www.yeastgenome.org/locus/S000029329 NTS2-1], [https://www.yeastgenome.org/locus/S000029706 NTS2-2]
*New systematic nomenclature system for [https://www.yeastgenome.org/search?q=YNC&category=locus entire annotated complement of ncRNAs]

Various sequence and annotation files are available on SGD's [http://sgd-archive.yeastgenome.org/sequence/S288C_reference/ Downloads] site.

==R64.3 Annotation update details==
{| border="1" style="border-collapse:collapse; width:90%" cellpadding="3"
|-
! style="background: #D8D8D8" | Chr
! style="background: #D8D8D8" | Feature
! style="background: #D8D8D8" | Description of change
! style="background: #D8D8D8" | Reference
|-
|II
|[https://www.yeastgenome.org/locus/S000303802 YNCB0008W] aka GAL10-ncRNA
|New ncRNA antisense to GAL10
*coordinates 276805..280645
|[https://www.yeastgenome.org/reference/S000128634 Houseley et al 2008] PMID:19061643, 
[https://www.yeastgenome.org/reference/S000131425 Pinskaya et al 2009] PMID:19407817, 
<br>[https://www.yeastgenome.org/reference/S000148029 Geisler et al 2012] PMID:22226051
|-
|II
|[https://www.yeastgenome.org/locus/S000303803 YNCB0014W] aka TBRT/XUT_2F-154
|New ncRNA antisense to TAT1
*coordinates 376610..378633
|[https://www.yeastgenome.org/reference/S000250512 Awasthi et al 2020] PMID:32081726
|-
|III
|[https://www.yeastgenome.org/locus/S000303804 RE/RE301]
|New recombination enhancer
*coordinates 29108..29809
|[https://www.yeastgenome.org/reference/S000045456 Wu and Haber 1996] PMID:8861911
|-
|V
|[https://www.yeastgenome.org/locus/S000303805 YELWdelta27]
|New Ty1 LTR
*coordinates 449274..449626
|[https://www.yeastgenome.org/reference/S000249429 Nene et al 2018] PMID:29320491 
|-
|V
|[https://www.yeastgenome.org/locus/S000000792 HPA3/YEL066W]
|Moved translation start to Met19
*old coordinates: 26667..27206
*new coordinates: 26721..27206
|[https://www.yeastgenome.org/reference/S000154122 Sampath et al 2013] PMID:23775086
|-
|VII
|[https://www.yeastgenome.org/locus/S000303806 OTO1/YGR227C-A]
|New ORF
*coordinates 949052..949225 Crick
|[https://www.yeastgenome.org/reference/S000179595 Makanae et al 2015] PMID:25781884
|-
|VII
|[https://www.yeastgenome.org/locus/S000003139 ROK1/YGL171W]
|Two new uORFs
*coordinates uORF1: 182286..182407
*coordinates uORF2: 182291..182329
|[https://www.yeastgenome.org/reference/S000139084 Jeon and Kim 2010] PMID:20969870
|-
|VIII
|[https://www.yeastgenome.org/locus/S000303807 YHR052C-B]
|New ORF
*coordinates: 212519..212692 Crick
|[https://www.yeastgenome.org/reference/S000217202 He et al 2018] PMID:29897761
|-
|VIII
|[https://www.yeastgenome.org/locus/S000303808 YHR054C-B]
|New ORF
*coordinates: 214517..214690 Crick
|[https://www.yeastgenome.org/reference/S000217202 He et al 2018] PMID:29897761
|-
|VIII
|[https://www.yeastgenome.org/locus/S000303809 SUT169/YNCH0011W]
|New ncRNA
*coordinates 378254..379237
|[https://www.yeastgenome.org/reference/S000129105 Xu et al 2009] PMID:19169243,
[https://www.yeastgenome.org/reference/S000148029 Geisler et al 2012] PMID:22226051, 
<br>[https://www.yeastgenome.org/reference/S000183986 Huber et al 2016] PMID:27292640, 
<br>[https://www.yeastgenome.org/reference/S000206477 Bunina et al 2017] PMID:28977638
|-
|X
|[https://www.yeastgenome.org/locus/S000003773 YJR012C]
|Moved start to Met76
*old coordinates: 459795..460418 Crick
*new coordinates: 459795..460193 Crick
|[https://www.yeastgenome.org/reference/S000216555 Sadhu et al 2018] PMID:29632376
|-
|X
|[https://www.yeastgenome.org/locus/S000303810 YJR107C-A]
|New ORF
*coordinates 628457..628693 Crick
|[https://www.yeastgenome.org/reference/S000182052 Yagoub et al 2015] PMID:26554900,<br>[https://www.yeastgenome.org/reference/S000217202 He et al 2018] PMID:29897761
|-
|XI
|[https://www.yeastgenome.org/locus/S000303811 YKL104W-A]
|New ORF
*coordinates 245032..245286
|[https://www.yeastgenome.org/reference/S000217202 He et al 2018] PMID:29897761
|-
|XII
|[https://www.yeastgenome.org/locus/S000303812 YLR379W-A]
|New ORF
*coordinates: 877444..877716
|Internal reanalysis of results from [https://www.yeastgenome.org/reference/S000179596 Song et al 2015] to find and annotate missing S288C ORFs PMID:25781462
|-
|XII
|[https://www.yeastgenome.org/locus/S000029714 NTS1-2], [https://www.yeastgenome.org/locus/S000029329 NTS2-1], [https://www.yeastgenome.org/locus/S000029706 NTS2-2]
|Change feature_type/SO_term from SO:0001637 rRNA_gene to SO:0000183 non_transcribed_region
|
|-
|XIII
|[https://www.yeastgenome.org/locus/S000004755 LDO45/YMR147W]
|Shift stop to be same as LDO16/YMR148W, add intron
*old coordinates 559199..559870
*new coordinates 559199..559780, 560156..560812
|[https://www.yeastgenome.org/reference/S000207266 Eisenberg-Bord et al 2018] PMID:29187527
|-
|XIII
|[https://www.yeastgenome.org/locus/S000303813 YMR008C-A]
|New ORF
*coordinates 283081..283548 Crick
|Internal reanalysis of results from [https://www.yeastgenome.org/reference/S000179596 Song et al 2015] to find and annotate missing S288C ORFs PMID:25781462
|-
|XIII
|[https://www.yeastgenome.org/locus/S000303814 YNCM0001W] aka PHO84 lncRNA
|New ncRNA
*coordinates: 23564..26578
|[https://www.yeastgenome.org/reference/S000124750 Camblong et al 2007] PMID:18022365
|-
|XIV
|[https://www.yeastgenome.org/locus/S000005204 LTO1/YNL260C]
|Move start to Met37
*old coordinates: 156859..157455 Crick
*new coordinates: 156859..157347 Crick
|[https://www.yeastgenome.org/reference/S000180918 Paul et al 2015] PMID:26182403
|-
|XVI
|[https://www.yeastgenome.org/locus/S000303815 YNCP0002W] aka GAL4 lncRNA
|New ncRNA
*coordinates: 79562..82648
|[https://www.yeastgenome.org/reference/S000148029 Geisler et al 2012] PMID:22226051
|}

==New systematic nomenclature system for noncoding RNA genes==
{|border="1" style="border-collapse:collapse; width:90%" cellpadding="1"
|-
! style="background: #D8D8D8" | Chr
! style="background: #D8D8D8" | Systematic_name
! style="background: #D8D8D8" | Gene_name
! style="background: #D8D8D8" | Alias
! style="background: #D8D8D8" | Feature_type
! style="background: #D8D8D8" | Coordinates
! style="background: #D8D8D8" | Strand
|-
| I || [https://www.yeastgenome.org/locus/YNCA0001W YNCA0001W] || HRA1 ||  || ncRNA gene || 99305..99868 || +
|-
| I || [https://www.yeastgenome.org/locus/YNCA0002W YNCA0002W] || TRN1 || tP(UGG)A, tRNA-Pro || tRNA gene || 139152..139254 || +
|-
| I || [https://www.yeastgenome.org/locus/YNCA0003W YNCA0003W] || SNR18 || snR18 || snoRNA gene || 142367..142468 || +
|-
| I || [https://www.yeastgenome.org/locus/YNCA0004W YNCA0004W] || TGA1 || tA(UGC)A, tRNA-Ala || tRNA gene || 166267..166339 || +
|-
| I || [https://www.yeastgenome.org/locus/YNCA0005W YNCA0005W] || SUP56 || tL(CAA)A, tRNA-Leu || tRNA gene || 181141..181254 || +
|-
| I || [https://www.yeastgenome.org/locus/YNCA0006C YNCA0006C] ||  || tS(AGA)A, tRNA-Ser || tRNA gene || 182522..182603 || -
|-
| II || [https://www.yeastgenome.org/locus/YNCB0001W YNCB0001W] ||  || tL(UAA)B1, tRNA-Leu || tRNA gene || 9583..9666 || +
|-
| II || [https://www.yeastgenome.org/locus/YNCB0002W YNCB0002W] ||  || tF(GAA)B, tRNA-Phe || tRNA gene || 36398..36488 || +
|-
| II || [https://www.yeastgenome.org/locus/YNCB0003W YNCB0003W] || SNR56 || snR56 || snoRNA gene || 88190..88277 || +
|-
| II || [https://www.yeastgenome.org/locus/YNCB0004W YNCB0004W] ||  || tI(AAU)B, tRNA-Ile || tRNA gene || 197494..197567 || +
|-
| II || [https://www.yeastgenome.org/locus/YNCB0005C YNCB0005C] ||  || tG(GCC)B, tRNA-Gly || tRNA gene || 197629..197699 || -
|-
| II || [https://www.yeastgenome.org/locus/YNCB0006W YNCB0006W] ||  || tS(AGA)B, tRNA-Ser || tRNA gene || 227075..227156 || +
|-
| II || [https://www.yeastgenome.org/locus/YNCB0007W YNCB0007W] ||  || tT(AGU)B, tRNA-Thr || tRNA gene || 266378..266450 || +
|-
| II || [https://www.yeastgenome.org/locus/YNCB0008W YNCB0008W] ||  || GAL10-ncRNA || ncRNA gene || 276805..280645  || +
|-
| II || [https://www.yeastgenome.org/locus/YNCB0009C YNCB0009C] || SNR161 || snR161 || snoRNA gene || 307185..307345 || -
|-
| II || [https://www.yeastgenome.org/locus/YNCB0010W YNCB0010W] || TLC1 ||  || telomerase RNA gene || 307587..308887 || +
|-
| II || [https://www.yeastgenome.org/locus/YNCB0011C YNCB0011C] ||  || tV(UAC)B, tRNA-Val || tRNA gene || 326792..326865 || -
|-
| II || [https://www.yeastgenome.org/locus/YNCB0012W YNCB0012W] ||  || tL(UAA)B2, tRNA-Leu || tRNA gene || 347603..347686 || +
|-
| II || [https://www.yeastgenome.org/locus/YNCB0013W YNCB0013W] ||  || tQ(UUG)B, tRNA-Gln || tRNA gene || 350827..350898 || +
|-
| II || [https://www.yeastgenome.org/locus/YNCB0014W YNCB0014W] || TBRT || XUT_2F-154 || ncRNA gene || 376610..378633 || +
|-
| II || [https://www.yeastgenome.org/locus/YNCB0015W YNCB0015W] ||  || tR(UCU)B, tRNA-Arg || tRNA gene || 405878..405949 || +
|-
| II || [https://www.yeastgenome.org/locus/YNCB0016W YNCB0016W] ||  || tD(GUC)B, tRNA-Asp || tRNA gene || 405960..406031 || +
|-
| II || [https://www.yeastgenome.org/locus/YNCB0017C YNCB0017C] ||  || tC(GCA)B, tRNA-Cys || tRNA gene || 643007..643078 || -
|-
| II || [https://www.yeastgenome.org/locus/YNCB0018W YNCB0018W] ||  || tE(UUC)B, tRNA-Glu || tRNA gene || 645167..645238 || +
|-
| II || [https://www.yeastgenome.org/locus/YNCB0019C YNCB0019C] || LSR1 ||  || snRNA gene || 680688..681862 || -
|-
| III || [https://www.yeastgenome.org/locus/YNCC0001C YNCC0001C] ||  || tE(UUC)C, tRNA-Glu || tRNA gene || 82462..82533 || -
|-
| III || [https://www.yeastgenome.org/locus/YNCC0002W YNCC0002W] || SUP53 || tL(CAA)C, tRNA-Leu || tRNA gene || 90859..90972 || +
|-
| III || [https://www.yeastgenome.org/locus/YNCC0003C YNCC0003C] || SNR43 || snR43 || snoRNA gene || 107504..107712 || -
|-
| III || [https://www.yeastgenome.org/locus/YNCC0004C YNCC0004C] || SUF2 || tP(AGG)C, tRNA-Pro || tRNA gene || 123577..123648 || -
|-
| III || [https://www.yeastgenome.org/locus/YNCC0005W YNCC0005W] ||  || tN(GUU)C, tRNA-Asn || tRNA gene || 127716..127789 || +
|-
| III || [https://www.yeastgenome.org/locus/YNCC0006C YNCC0006C] || SNR33 || snR33 || snoRNA gene || 142364..142546 || -
|-
| III || [https://www.yeastgenome.org/locus/YNCC0007C YNCC0007C] || SUF16 || tG(GCC)C, tRNA-Gly || tRNA gene || 142701..142771 || -
|-
| III || [https://www.yeastgenome.org/locus/YNCC0008W YNCC0008W] ||  || tM(CAU)C, tRNA-Met || tRNA gene || 149920..149991 || +
|-
| III || [https://www.yeastgenome.org/locus/YNCC0009C YNCC0009C] ||  || tK(CUU)C, tRNA-Lys || tRNA gene || 151284..151356 || -
|-
| III || [https://www.yeastgenome.org/locus/YNCC0010C YNCC0010C] ||  || tQ(UUG)C, tRNA-Gln || tRNA gene || 168301..168372 || -
|-
| III || [https://www.yeastgenome.org/locus/YNCC0011W YNCC0011W] || SNR65 || snR65 || snoRNA gene || 177183..177282 || +
|-
| III || [https://www.yeastgenome.org/locus/YNCC0012C YNCC0012C] || SNR189 || snR189 || snoRNA gene || 178610..178798 || -
|-
| III || [https://www.yeastgenome.org/locus/YNCC0013W YNCC0013W] || SUP61 || tS(CGA)C, tRNA-Ser || tRNA gene || 227942..228042 || +
|-
| III || [https://www.yeastgenome.org/locus/YNCC0014W YNCC0014W] ||  || tT(AGU)C, tRNA-Thr || tRNA gene || 295484..295556 || +
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0001W YNCD0001W] ||  || tG(GCC)D1, tRNA-Gly || tRNA gene || 83548..83618 || +
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0002C YNCD0002C] || SNR63 || snR63 || snoRNA gene || 323217..323471 || -
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0003W YNCD0003W] ||  || tK(UUU)D, tRNA-Lys || tRNA gene || 359577..359672 || +
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0004W YNCD0004W] ||  || tA(AGC)D, tRNA-Ala || tRNA gene || 410379..410451 || +
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0005C YNCD0005C] ||  || tT(AGU)D, tRNA-Thr || tRNA gene || 434264..434336 || -
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0006W YNCD0006W] ||  || tS(AGA)D1, tRNA-Ser || tRNA gene || 437772..437853 || +
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0007C YNCD0007C] ||  || tV(UAC)D, tRNA-Val || tRNA gene || 488797..488870 || -
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0008W YNCD0008W] ||  || tL(UAA)D, tRNA-Leu || tRNA gene || 519743..519826 || +
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0009W YNCD0009W] ||  || tQ(UUG)D1, tRNA-Gln || tRNA gene || 520972..521043 || +
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0010C YNCD0010C] || SNR47 || snR47 || snoRNA gene || 541602..541700 || -
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0011W YNCD0011W] ||  || tR(UCU)D, tRNA-Arg || tRNA gene || 568882..568953 || +
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0012W YNCD0012W] ||  || tD(GUC)D, tRNA-Asp || tRNA gene || 568964..569035 || +
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0013C YNCD0013C] ||  || tR(ACG)D, tRNA-Arg || tRNA gene || 619969..620041 || -
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0014C YNCD0014C] ||  || tQ(UUG)D2, tRNA-Gln || tRNA gene || 645153..645224 || -
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0015C YNCD0015C] ||  || tI(AAU)D, tRNA-Ile || tRNA gene || 668007..668080 || -
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0016C YNCD0016C] ||  || tQ(UUG)D3, tRNA-Gln || tRNA gene || 802731..802802 || -
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0017W YNCD0017W] ||  || tI(UAU)D, tRNA-Ile || tRNA gene || 884361..884493 || +
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0018W YNCD0018W] || SUP2 || tY(GUA)D, tRNA-Tyr || tRNA gene || 946312..946400 || +
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0019C YNCD0019C] ||  || tS(AGA)D2, tRNA-Ser || tRNA gene || 980974..981055 || -
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0020W YNCD0020W] ||  || tG(GCC)D2, tRNA-Gly || tRNA gene || 992832..992902 || +
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0021C YNCD0021C] ||  || tE(CUC)D, tRNA-Glu || tRNA gene || 1017207..1017278 || -
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0022C YNCD0022C] ||  || tV(CAC)D, tRNA-Val || tRNA gene || 1075472..1075544 || -
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0023C YNCD0023C] ||  || tF(GAA)D, tRNA-Phe || tRNA gene || 1095370..1095461 || -
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0024C YNCD0024C] ||  || tX(XXX)D || tRNA gene || 1150842..1150941 || -
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0025W YNCD0025W] || EMT1 || tM(CAU)D, tRNA-Met || tRNA gene || 1175829..1175901 || +
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0026W YNCD0026W] ||  || tK(CUU)D1, tRNA-Lys || tRNA gene || 1201750..1201822 || +
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0027C YNCD0027C] || SUF3 || tG(CCC)D, tRNA-Gly || tRNA gene || 1257008..1257079 || -
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0028W YNCD0028W] ||  || tS(AGA)D3, tRNA-Ser || tRNA gene || 1305630..1305712 || +
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0029C YNCD0029C] ||  || tK(CUU)D2, tRNA-Lys || tRNA gene || 1352466..1352538 || -
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0030W YNCD0030W] || SNR13 || snR13 || snoRNA gene || 1402919..1403042 || +
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0031C YNCD0031C] ||  || tL(CAA)D, tRNA-Leu || tRNA gene || 1461715..1461829 || -
|-
| IV || [https://www.yeastgenome.org/locus/YNCD0032C YNCD0032C] || SNR84 || snR84 || snoRNA gene || 1492477..1493026 || -
|-
| V || [https://www.yeastgenome.org/locus/YNCE0001C YNCE0001C] || SNR80 || snR80 || snoRNA gene || 52150..52320 || -
|-
| V || [https://www.yeastgenome.org/locus/YNCE0002W YNCE0002W] || SNR67 || snR67 || snoRNA gene || 61352..61433 || +
|-
| V || [https://www.yeastgenome.org/locus/YNCE0003W YNCE0003W] || SNR53 || snR53 || snoRNA gene || 61699..61789 || +
|-
| V || [https://www.yeastgenome.org/locus/YNCE0004C YNCE0004C] ||  || tG(GCC)E, tRNA-Gly || tRNA gene || 61890..61960 || -
|-
| V || [https://www.yeastgenome.org/locus/YNCE0005W YNCE0005W] ||  || tS(AGA)E, tRNA-Ser || tRNA gene || 86604..86685 || +
|-
| V || [https://www.yeastgenome.org/locus/YNCE0006W YNCE0006W] || IMT4 || tM(CAU)E, tRNA-Met || tRNA gene || 100133..100204 || +
|-
| V || [https://www.yeastgenome.org/locus/YNCE0007C YNCE0007C] || RPR1 ||  || ncRNA gene || 117667..118035 || -
|-
| V || [https://www.yeastgenome.org/locus/YNCE0008C YNCE0008C] ||  || tQ(UUG)E2, tRNA-Gln || tRNA gene || 131082..131153 || -
|-
| V || [https://www.yeastgenome.org/locus/YNCE0009C YNCE0009C] ||  || tK(CUU)E1, tRNA-Lys || tRNA gene || 135425..135497 || -
|-
| V || [https://www.yeastgenome.org/locus/YNCE0010W YNCE0010W] ||  || tR(UCU)E, tRNA-Arg || tRNA gene || 138666..138737 || +
|-
| V || [https://www.yeastgenome.org/locus/YNCE0011C YNCE0011C] || SNR14 || snR14 || snRNA gene || 167427..167586 || -
|-
| V || [https://www.yeastgenome.org/locus/YNCE0012W YNCE0012W] ||  || tE(UUC)E1, tRNA-Glu || tRNA gene || 177099..177170 || +
|-
| V || [https://www.yeastgenome.org/locus/YNCE0013W YNCE0013W] ||  || tH(GUG)E1, tRNA-His || tRNA gene || 207357..207428 || +
|-
| V || [https://www.yeastgenome.org/locus/YNCE0014W YNCE0014W] ||  || tQ(UUG)E1, tRNA-Gln || tRNA gene || 250286..250357 || +
|-
| V || [https://www.yeastgenome.org/locus/YNCE0015C YNCE0015C] || SUP19 || tS(UGA)E, tRNA-Ser || tRNA gene || 288443..288524 || -
|-
| V || [https://www.yeastgenome.org/locus/YNCE0016C YNCE0016C] ||  || tA(UGC)E, tRNA-Ala || tRNA gene || 312023..312095 || -
|-
| V || [https://www.yeastgenome.org/locus/YNCE0017W YNCE0017W] || SRG1 ||  || ncRNA gene || 322212..322762 || +
|-
| V || [https://www.yeastgenome.org/locus/YNCE0018W YNCE0018W] ||  || tE(UUC)E2, tRNA-Glu || tRNA gene || 354934..355005 || +
|-
| V || [https://www.yeastgenome.org/locus/YNCE0019W YNCE0019W] || SNR4 || snR4 || snoRNA gene || 424698..424883 || +
|-
| V || [https://www.yeastgenome.org/locus/YNCE0020C YNCE0020C] || SNR52 || snR52 || snoRNA gene || 431129..431220 || -
|-
| V || [https://www.yeastgenome.org/locus/YNCE0021C YNCE0021C] ||  || tH(GUG)E2, tRNA-His || tRNA gene || 434541..434612 || -
|-
| V || [https://www.yeastgenome.org/locus/YNCE0022C YNCE0022C] ||  || tK(CUU)E2, tRNA-Lys || tRNA gene || 435752..435824 || -
|-
| V || [https://www.yeastgenome.org/locus/YNCE0023W YNCE0023W] ||  || tV(AAC)E1, tRNA-Val || tRNA gene || 438700..438773 || +
|-
| V || [https://www.yeastgenome.org/locus/YNCE0024W YNCE0024W] || SCR1 ||  || ncRNA gene || 441987..442508 || +
|-
| V || [https://www.yeastgenome.org/locus/YNCE0025C YNCE0025C] ||  || tI(AAU)E1, tRNA-Ile || tRNA gene || 443202..443275 || -
|-
| V || [https://www.yeastgenome.org/locus/YNCE0026W YNCE0026W] ||  || tV(AAC)E2, tRNA-Val || tRNA gene || 469457..469530 || +
|-
| V || [https://www.yeastgenome.org/locus/YNCE0027C YNCE0027C] ||  || tE(UUC)E3, tRNA-Glu || tRNA gene || 487331..487402 || -
|-
| V || [https://www.yeastgenome.org/locus/YNCE0028C YNCE0028C] ||  || tR(ACG)E, tRNA-Arg || tRNA gene || 492352..492424 || -
|-
| V || [https://www.yeastgenome.org/locus/YNCE0029C YNCE0029C] ||  || tI(AAU)E2, tRNA-Ile || tRNA gene || 551285..551358 || -
|-
| VI || [https://www.yeastgenome.org/locus/YNCF0001C YNCF0001C] || RUF21 ||  || ncRNA gene || 57815..58521 || -
|-
| VI || [https://www.yeastgenome.org/locus/YNCF0002W YNCF0002W] || SUF9 || tP(UGG)F, tRNA-Pro || tRNA gene || 101376..101478 || +
|-
| VI || [https://www.yeastgenome.org/locus/YNCF0003C YNCF0003C] || RUF20 ||  || ncRNA gene || 131061..131503 || -
|-
| VI || [https://www.yeastgenome.org/locus/YNCF0004C YNCF0004C] ||  || tN(GUU)F, tRNA-Asn || tRNA gene || 137486..137559 || -
|-
| VI || [https://www.yeastgenome.org/locus/YNCF0005C YNCF0005C] ||  || tF(GAA)F, tRNA-Phe || tRNA gene || 157916..158007 || -
|-
| VI || [https://www.yeastgenome.org/locus/YNCF0006W YNCF0006W] || SUF20 || tG(GCC)F1, tRNA-Gly || tRNA gene || 162228..162298 || +
|-
| VI || [https://www.yeastgenome.org/locus/YNCF0007W YNCF0007W] || SUP11 || tY(GUA)F1, tRNA-Tyr || tRNA gene || 167437..167525 || +
|-
| VI || [https://www.yeastgenome.org/locus/YNCF0008C YNCF0008C] ||  || tG(GCC)F2, tRNA-Gly || tRNA gene || 180974..181044 || -
|-
| VI || [https://www.yeastgenome.org/locus/YNCF0009C YNCF0009C] ||  || tS(GCU)F, tRNA-Ser || tRNA gene || 191513..191613 || -
|-
| VI || [https://www.yeastgenome.org/locus/YNCF0010C YNCF0010C] || RUF22 ||  || ncRNA gene || 199299..199813 || -
|-
| VI || [https://www.yeastgenome.org/locus/YNCF0011C YNCF0011C] ||  || tA(AGC)F, tRNA-Ala || tRNA gene || 204924..204996 || -
|-
| VI || [https://www.yeastgenome.org/locus/YNCF0012C YNCF0012C] || SUP6 || tY(GUA)F2, tRNA-Tyr || tRNA gene || 210619..210707 || -
|-
| VI || [https://www.yeastgenome.org/locus/YNCF0013W YNCF0013W] || RUF23 ||  || ncRNA gene || 221714..221967 || +
|-
| VI || [https://www.yeastgenome.org/locus/YNCF0014C YNCF0014C] ||  || tK(CUU)F, tRNA-Lys || tRNA gene || 226688..226760 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0001C YNCG0001C] || RME3 ||  || ncRNA gene || 33109..35013 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0002C YNCG0002C] ||  || tV(AAC)G3, tRNA-Val || tRNA gene || 73829..73902 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0003C YNCG0003C] ||  || tH(GUG)G1, tRNA-His || tRNA gene || 110625..110696 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0004W YNCG0004W] ||  || tK(UUU)G1, tRNA-Lys || tRNA gene || 115488..115583 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0005W YNCG0005W] ||  || tK(CUU)G1, tRNA-Lys || tRNA gene || 122269..122341 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0006C YNCG0006C] || RME2 ||  || ncRNA gene || 141898..144120 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0007C YNCG0007C] ||  || tK(CUU)G2, tRNA-Lys || tRNA gene || 185714..185786 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0008W YNCG0008W] ||  || tL(CAA)G1, tRNA-Leu || tRNA gene || 205521..205634 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0009C YNCG0009C] ||  || tW(CCA)G1, tRNA-Trp || tRNA gene || 287350..287455 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0010W YNCG0010W] || SNR82 || snR82 || snoRNA gene || 316788..317055 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0011W YNCG0011W] ||  || tH(GUG)G2, tRNA-His || tRNA gene || 319781..319852 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0012W YNCG0012W] || SOE1 || tE(UUC)G1, tRNA-Glu || tRNA gene || 328583..328654 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0013W YNCG0013W] || SNR10 || snR10 || snoRNA gene || 345986..346230 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0014C YNCG0014C] || SNR39 || snR39 || snoRNA gene || 365163..365251 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0015C YNCG0015C] || SNR39B || snR39B || snoRNA gene || 366374..366469 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0016C YNCG0016C] ||  || tE(UUC)G2, tRNA-Glu || tRNA gene || 401527..401598 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0017W YNCG0017W] ||  || tR(UCU)G1, tRNA-Arg || tRNA gene || 405470..405541 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0018C YNCG0018C] ||  || tV(AAC)G1, tRNA-Val || tRNA gene || 412294..412367 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0019W YNCG0019W] || SUP54 || tL(CAA)G2, tRNA-Leu || tRNA gene || 423092..423205 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0020C YNCG0020C] ||  || tF(GAA)G, tRNA-Phe || tRNA gene || 440716..440807 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0021W YNCG0021W] ||  || tD(GUC)G1, tRNA-Asp || tRNA gene || 531610..531681 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0022W YNCG0022W] ||  || tE(UUC)G3, tRNA-Glu || tRNA gene || 541850..541921 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0023C YNCG0023C] ||  || tD(GUC)G2, tRNA-Asp || tRNA gene || 544577..544648 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0024W YNCG0024W] || SNR46 || snR46 || snoRNA gene || 545370..545566 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0025C YNCG0025C] ||  || tS(AGA)G, tRNA-Ser || tRNA gene || 561662..561743 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0026W YNCG0026W] || SNR48 || snR48 || snoRNA gene || 609584..609696 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0027W YNCG0027W] ||  || tT(UGU)G1, tRNA-Thr || tRNA gene || 661749..661820 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0028W YNCG0028W] ||  || tL(GAG)G, tRNA-Leu || tRNA gene || 700675..700756 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0029C YNCG0029C] ||  || tK(UUU)G2, tRNA-Lys || tRNA gene || 700953..701048 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0030C YNCG0030C] ||  || tC(GCA)G, tRNA-Cys || tRNA gene || 707108..707179 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0031W YNCG0031W] ||  || tN(GUU)G, tRNA-Asn || tRNA gene || 731137..731210 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0032W YNCG0032W] ||  || tR(UCU)G3, tRNA-Arg || tRNA gene || 736340..736411 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0033W YNCG0033W] ||  || tI(AAU)G, tRNA-Ile || tRNA gene || 739122..739195 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0034W YNCG0034W] ||  || tA(AGC)G, tRNA-Ala || tRNA gene || 774349..774421 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0035W YNCG0035W] || SUF4 || tG(UCC)G, tRNA-Gly || tRNA gene || 779616..779687 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0036W YNCG0036W] ||  || tA(UGC)G, tRNA-Ala || tRNA gene || 794417..794489 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0037W YNCG0037W] ||  || tV(AAC)G2, tRNA-Val || tRNA gene || 823482..823555 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0038C YNCG0038C] ||  || tR(UCU)G2, tRNA-Arg || tRNA gene || 828723..828794 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0039W YNCG0039W] ||  || tG(GCC)G1, tRNA-Gly || tRNA gene || 845649..845719 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0040C YNCG0040C] ||  || tL(CAA)G3, tRNA-Leu || tRNA gene || 857378..857491 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0041W YNCG0041W] ||  || tK(CUU)G3, tRNA-Lys || tRNA gene || 876394..876466 || +
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0042C YNCG0042C] ||  || tW(CCA)G2, tRNA-Trp || tRNA gene || 878710..878815 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0043C YNCG0043C] ||  || tG(GCC)G2, tRNA-Gly || tRNA gene || 930953..931023 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0044C YNCG0044C] || SNR7-L || snR7-L || snRNA gene || 939459..939672 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0045C YNCG0045C] || SNR7-S || snR7-S || snRNA gene || 939494..939672 || -
|-
| VII || [https://www.yeastgenome.org/locus/YNCG0046W YNCG0046W] ||  || tT(UGU)G2, tRNA-Thr || tRNA gene || 1004216..1004287 || +
|-
| VIII || [https://www.yeastgenome.org/locus/YNCH0001W YNCH0001W] ||  || tH(GUG)H, tRNA-His || tRNA gene || 62755..62826 || +
|-
| VIII || [https://www.yeastgenome.org/locus/YNCH0002C YNCH0002C] ||  || tV(AAC)H, tRNA-Val || tRNA gene || 85298..85371 || -
|-
| VIII || [https://www.yeastgenome.org/locus/YNCH0003C YNCH0003C] ||  || tT(AGU)H, tRNA-Thr || tRNA gene || 116107..116179 || -
|-
| VIII || [https://www.yeastgenome.org/locus/YNCH0004C YNCH0004C] ||  || tS(AGA)H, tRNA-Ser || tRNA gene || 133026..133107 || -
|-
| VIII || [https://www.yeastgenome.org/locus/YNCH0005W YNCH0005W] ||  || tQ(UUG)H, tRNA-Gln || tRNA gene || 134321..134392 || +
|-
| VIII || [https://www.yeastgenome.org/locus/YNCH0006C YNCH0006C] ||  || tA(AGC)H, tRNA-Ala || tRNA gene || 146242..146314 || -
|-
| VIII || [https://www.yeastgenome.org/locus/YNCH0007W YNCH0007W] || RUF5-1 ||  || ncRNA gene || 212409..213118 || +
|-
| VIII || [https://www.yeastgenome.org/locus/YNCH0008W YNCH0008W] || RUF5-2 ||  || ncRNA gene || 214407..215116 || +
|-
| VIII || [https://www.yeastgenome.org/locus/YNCH0009C YNCH0009C] ||  || tF(GAA)H1, tRNA-Phe || tRNA gene || 237848..237939 || -
|-
| VIII || [https://www.yeastgenome.org/locus/YNCH0010C YNCH0010C] ||  || tF(GAA)H2, tRNA-Phe || tRNA gene || 358478..358569 || -
|-
| VIII || [https://www.yeastgenome.org/locus/YNCH0011W YNCH0011W] || SUT169 ||  || ncRNA gene || 378254..379237 || +
|-
| VIII || [https://www.yeastgenome.org/locus/YNCH0012W YNCH0012W] || SNR32 || snR32 || snoRNA gene || 381540..381727 || +
|-
| VIII || [https://www.yeastgenome.org/locus/YNCH0013C YNCH0013C] || SUF8 || tP(UGG)H, tRNA-Pro || tRNA gene || 388893..388995 || -
|-
| VIII || [https://www.yeastgenome.org/locus/YNCH0014W YNCH0014W] || SNR71 || snR71 || snoRNA gene || 411228..411317 || +
|-
| VIII || [https://www.yeastgenome.org/locus/YNCH0015W YNCH0015W] ||  || tT(UGU)H, tRNA-Thr || tRNA gene || 466990..467061 || +
|-
| VIII || [https://www.yeastgenome.org/locus/YNCH0016C YNCH0016C] ||  || tV(CAC)H, tRNA-Val || tRNA gene || 475706..475778 || -
|-
| IX || [https://www.yeastgenome.org/locus/YNCI0001W YNCI0001W] || SNR68 || snR68 || snoRNA gene || 97111..97246 || +
|-
| IX || [https://www.yeastgenome.org/locus/YNCI0002W YNCI0002W] ||  || tT(AGU)I1, tRNA-Thr || tRNA gene || 175031..175103 || +
|-
| IX || [https://www.yeastgenome.org/locus/YNCI0003C YNCI0003C] ||  || tI(AAU)I1, tRNA-Ile || tRNA gene || 183440..183513 || -
|-
| IX || [https://www.yeastgenome.org/locus/YNCI0004W YNCI0004W] ||  || tE(CUC)I, tRNA-Glu || tRNA gene || 197592..197663 || +
|-
| IX || [https://www.yeastgenome.org/locus/YNCI0005W YNCI0005W] ||  || tI(AAU)I2, tRNA-Ile || tRNA gene || 210665..210738 || +
|-
| IX || [https://www.yeastgenome.org/locus/YNCI0006W YNCI0006W] || SUP17 || tS(UGA)I, tRNA-Ser || tRNA gene || 248850..248931 || +
|-
| IX || [https://www.yeastgenome.org/locus/YNCI0007C YNCI0007C] ||  || tK(CUU)I, tRNA-Lys || tRNA gene || 300228..300300 || -
|-
| IX || [https://www.yeastgenome.org/locus/YNCI0008C YNCI0008C] ||  || tD(GUC)I1, tRNA-Asp || tRNA gene || 324303..324374 || -
|-
| IX || [https://www.yeastgenome.org/locus/YNCI0009W YNCI0009W] ||  || tT(AGU)I2, tRNA-Thr || tRNA gene || 325748..325820 || +
|-
| IX || [https://www.yeastgenome.org/locus/YNCI0010C YNCI0010C] ||  || tD(GUC)I2, tRNA-Asp || tRNA gene || 336349..336420 || -
|-
| IX || [https://www.yeastgenome.org/locus/YNCI0011W YNCI0011W] ||  || tE(UUC)I, tRNA-Glu || tRNA gene || 370417..370488 || +
|-
| IX || [https://www.yeastgenome.org/locus/YNCI0012 YNCI0012] || ICR1 ||  || ncRNA gene || 393884..397082 || -
|-
| IX || [https://www.yeastgenome.org/locus/YNCI0013W YNCI0013W] || PWR1 ||  || ncRNA gene || 395999..396939 || +
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0001C YNCJ0001C] ||  || tT(AGU)J, tRNA-Thr || tRNA gene || 59100..59172 || -
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0002C YNCJ0002C] ||  || tE(UUC)J, tRNA-Glu || tRNA gene || 115939..116010 || -
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0003C YNCJ0003C] || SNR128 || snR128 || snoRNA gene || 139566..139691 || -
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0004C YNCJ0004C] || SNR190 || snR190 || snoRNA gene || 139761..139950 || -
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0005C YNCJ0005C] ||  || tA(AGC)J, tRNA-Ala || tRNA gene || 197313..197385 || -
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0006W YNCJ0006W] ||  || tD(GUC)J1, tRNA-Asp || tRNA gene || 204735..204806 || +
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0007C YNCJ0007C] || SNR37 || snR37 || snoRNA gene || 228094..228479 || -
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0008W YNCJ0008W] ||  || tR(ACG)J, tRNA-Arg || tRNA gene || 233939..234011 || +
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0009C YNCJ0009C] || SNR60 || snR60 || snoRNA gene || 349130..349233 || -
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0010W YNCJ0010W] || SUP7 || tY(GUA)J1, tRNA-Tyr || tRNA gene || 354244..354332 || +
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0011W YNCJ0011W] ||  || tR(UCU)J1, tRNA-Arg || tRNA gene || 355374..355445 || +
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0012W YNCJ0012W] ||  || tD(GUC)J2, tRNA-Asp || tRNA gene || 355456..355527 || +
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0013C YNCJ0013C] ||  || tD(GUC)J3, tRNA-Asp || tRNA gene || 374424..374495 || -
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0014C YNCJ0014C] ||  || tR(UCU)J2, tRNA-Arg || tRNA gene || 374506..374577 || -
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0015W YNCJ0015W] ||  || tV(AAC)J, tRNA-Val || tRNA gene || 378360..378433 || +
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0016C YNCJ0016C] || EMT5 || tM(CAU)J1, tRNA-Met || tRNA gene || 391043..391115 || -
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0017C YNCJ0017C] ||  || tG(GCC)J1, tRNA-Gly || tRNA gene || 396726..396796 || -
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0018W YNCJ0018W] ||  || tK(CUU)J, tRNA-Lys || tRNA gene || 414966..415038 || +
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0019C YNCJ0019C] ||  || tW(CCA)J, tRNA-Trp || tRNA gene || 415931..416036 || -
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0020W YNCJ0020W] || EMT3 || tM(CAU)J2, tRNA-Met || tRNA gene || 422937..423009 || +
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0021C YNCJ0021C] || SUP51 || tL(UAA)J, tRNA-Leu || tRNA gene || 424432..424515 || -
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0022C YNCJ0022C] || IMT3 || tM(CAU)J3, tRNA-Met || tRNA gene || 517813..517884 || -
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0023C YNCJ0023C] ||  || tS(AGA)J, tRNA-Ser || tRNA gene || 524012..524093 || -
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0024W YNCJ0024W] || SUF23 || tG(GCC)J2, tRNA-Gly || tRNA gene || 531828..531898 || +
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0025W YNCJ0025W] || HSX1 || tR(CCU)J, tRNA-Arg || tRNA gene || 538555..538626 || +
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0026W YNCJ0026W] ||  || tD(GUC)J4, tRNA-Asp || tRNA gene || 541508..541579 || +
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0027C YNCJ0027C] || SUP4 || tY(GUA)J2, tRNA-Tyr || tRNA gene || 542956..543044 || -
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0028C YNCJ0028C] || IRT1 ||  || ncRNA gene || 605936..607424 || -
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0029W YNCJ0029W] ||  || tL(UAG)J, tRNA-Leu || tRNA gene || 617919..618019 || +
|-
| X || [https://www.yeastgenome.org/locus/YNCJ0030W YNCJ0030W] || SNR3 || snR3 || snoRNA gene || 663749..663942 || +
|-
| XI || [https://www.yeastgenome.org/locus/YNCK0001W YNCK0001W] || SNR64 || snR64 || snoRNA gene || 38811..38911 || +
|-
| XI || [https://www.yeastgenome.org/locus/YNCK0002C YNCK0002C] || TRT2 || tT(CGU)K, tRNA-Thr || tRNA gene || 46735..46806 || -
|-
| XI || [https://www.yeastgenome.org/locus/YNCK0003W YNCK0003W] ||  || tN(GUU)K, tRNA-Asn || tRNA gene || 74624..74697 || +
|-
| XI || [https://www.yeastgenome.org/locus/YNCK0004W YNCK0004W] ||  || tL(UAA)K, tRNA-Leu || tRNA gene || 84208..84291 || +
|-
| XI || [https://www.yeastgenome.org/locus/YNCK0005C YNCK0005C] ||  || tE(UUC)K, tRNA-Glu || tRNA gene || 141018..141089 || -
|-
| XI || [https://www.yeastgenome.org/locus/YNCK0006C YNCK0006C] ||  || tR(UCU)K, tRNA-Arg || tRNA gene || 162487..162558 || -
|-
| XI || [https://www.yeastgenome.org/locus/YNCK0007W YNCK0007W] ||  || tK(CUU)K, tRNA-Lys || tRNA gene || 202999..203071 || +
|-
| XI || [https://www.yeastgenome.org/locus/YNCK0008W YNCK0008W] ||  || tA(AGC)K1, tRNA-Ala || tRNA gene || 219895..219967 || +
|-
| XI || [https://www.yeastgenome.org/locus/YNCK0009W YNCK0009W] || SNR38 || snR38 || snoRNA gene || 283185..283279 || +
|-
| XI || [https://www.yeastgenome.org/locus/YNCK0010W YNCK0010W] ||  || tW(CCA)K, tRNA-Trp || tRNA gene || 302918..303023 || +
|-
| XI || [https://www.yeastgenome.org/locus/YNCK0011C YNCK0011C] ||  || tV(AAC)K1, tRNA-Val || tRNA gene || 308144..308217 || -
|-
| XI || [https://www.yeastgenome.org/locus/YNCK0012C YNCK0012C] ||  || tH(GUG)K, tRNA-His || tRNA gene || 313401..313472 || -
|-
| XI || [https://www.yeastgenome.org/locus/YNCK0013W YNCK0013W] || SNR69 || snR69 || snoRNA gene || 364776..364876 || +
|-
| XI || [https://www.yeastgenome.org/locus/YNCK0014W YNCK0014W] ||  || tV(AAC)K2, tRNA-Val || tRNA gene || 379680..379753 || +
|-
| XI || [https://www.yeastgenome.org/locus/YNCK0015C YNCK0015C] || SNR87 || snR87 || snoRNA gene || 431030..431138 || -
|-
| XI || [https://www.yeastgenome.org/locus/YNCK0016W YNCK0016W] ||  || tL(CAA)K, tRNA-Leu || tRNA gene || 458557..458670 || +
|-
| XI || [https://www.yeastgenome.org/locus/YNCK0017W YNCK0017W] ||  || tR(ACG)K, tRNA-Arg || tRNA gene || 490968..491040 || +
|-
| XI || [https://www.yeastgenome.org/locus/YNCK0018C YNCK0018C] ||  || tD(GUC)K, tRNA-Asp || tRNA gene || 513332..513403 || -
|-
| XI || [https://www.yeastgenome.org/locus/YNCK0019W YNCK0019W] ||  || tA(AGC)K2, tRNA-Ala || tRNA gene || 517988..518060 || +
|-
| XI || [https://www.yeastgenome.org/locus/YNCK0020C YNCK0020C] || SNR42 || snR42 || snoRNA gene || 559016..559366 || -
|-
| XI || [https://www.yeastgenome.org/locus/YNCK0021W YNCK0021W] ||  || tK(UUU)K, tRNA-Lys || tRNA gene || 578965..579060 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0001W YNCL0001W] ||  || tP(UGG)L, tRNA-Pro || tRNA gene || 92548..92650 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0002C YNCL0002C] ||  || tS(AGA)L, tRNA-Ser || tRNA gene || 167944..168025 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0003W YNCL0003W] || SNR30 || snR30 || snoRNA gene || 198784..199389 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0004C YNCL0004C] ||  || tA(UGC)L, tRNA-Ala || tRNA gene || 214883..214955 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0005C YNCL0005C] || SNR79 || snR79 || snoRNA gene || 348427..348510 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0006W YNCL0006W] || SNR6 || snR6 || snRNA gene || 366235..366346 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0007W YNCL0007W] ||  || tR(ACG)L, tRNA-Arg || tRNA gene || 374355..374427 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0008W YNCL0008W] ||  || tD(GUC)L1, tRNA-Asp || tRNA gene || 427132..427203 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0009C YNCL0009C] ||  || tQ(UUG)L, tRNA-Gln || tRNA gene || 448650..448721 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0010C YNCL0010C] || RDN37-1 ||  || rRNA gene || 451575..458432 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0011C YNCL0011C] || ETS2-1 ||  || rRNA gene || 451575..451785 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0012C YNCL0012C] || RDN25-1 ||  || rRNA gene || 451786..455181 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0013C YNCL0013C] || ITS2-1 ||  || rRNA gene || 455182..455413 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0014C YNCL0014C] || RDN58-1 ||  || rRNA gene || 455414..455571 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0015C YNCL0015C] || ITS1-1 ||  || rRNA gene || 455572..455932 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0016C YNCL0016C] || RDN18-1 ||  || rRNA gene || 455933..457732 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0017C YNCL0017C] || ETS1-1 ||  || rRNA gene || 457733..458432 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0018W YNCL0018W] || RDN5-1 ||  || rRNA gene || 459676..459796 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0019C YNCL0019C] || ETS2-2 ||  || rRNA gene || 460712..460922 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0020C YNCL0020C] || RDN37-2 ||  || rRNA gene || 460712..467569 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0021C YNCL0021C] || RDN25-2 ||  || rRNA gene || 460923..464318 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0022C YNCL0022C] || ITS2-2 ||  || rRNA gene || 464319..464550 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0023C YNCL0023C] || RDN58-2 ||  || rRNA gene || 464551..464708 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0024C YNCL0024C] || ITS1-2 ||  || rRNA gene || 464709..465069 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0025C YNCL0025C] || RDN18-2 ||  || rRNA gene || 465070..466869 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0026C YNCL0026C] || ETS1-2 ||  || rRNA gene || 466870..467569 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0027W YNCL0027W] || RDN5-2 ||  || rRNA gene || 468813..468931 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0028W YNCL0028W] || RDN5-3 ||  || rRNA gene || 472465..472583 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0029W YNCL0029W] || RDN5-4 ||  || rRNA gene || 482045..482163 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0030W YNCL0030W] || RDN5-5 ||  || rRNA gene || 485697..485815 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0031W YNCL0031W] || RDN5-6 ||  || rRNA gene || 489349..489469 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0032C YNCL0032C] ||  || tL(UAG)L1, tRNA-Leu || tRNA gene || 592519..592619 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0033C YNCL0033C] ||  || tI(UAU)L, tRNA-Ile || tRNA gene || 605300..605432 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0034W YNCL0034W] ||  || tL(CAA)L, tRNA-Leu || tRNA gene || 628383..628497 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0035C YNCL0035C] ||  || tA(AGC)L, tRNA-Ala || tRNA gene || 656934..657006 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0036C YNCL0036C] ||  || tV(AAC)L, tRNA-Val || tRNA gene || 687859..687932 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0037W YNCL0037W] ||  || tL(UAG)L2, tRNA-Leu || tRNA gene || 732090..732190 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0038W YNCL0038W] ||  || tI(AAU)L1, tRNA-Ile || tRNA gene || 734802..734875 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0039W YNCL0039W] ||  || tX(XXX)L || tRNA gene || 784354..784453 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0040W YNCL0040W] ||  || tD(GUC)L2, tRNA-Asp || tRNA gene || 793918..793989 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0041C YNCL0041C] || SNR61 || snR61 || snoRNA gene || 794486..794575 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0042C YNCL0042C] || SNR55 || snR55 || snoRNA gene || 794697..794794 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0043C YNCL0043C] || SNR57 || snR57 || snoRNA gene || 794937..795024 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0044W YNCL0044W] ||  || tE(UUC)L, tRNA-Glu || tRNA gene || 797178..797249 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0045W YNCL0045W] || TRR4 || tR(CCG)L, tRNA-Arg || tRNA gene || 818609..818680 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0046W YNCL0046W] || SNR44 || snR44 || snoRNA gene || 856710..856920 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0047W YNCL0047W] ||  || tK(UUU)L, tRNA-Lys || tRNA gene || 875376..875471 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0048W YNCL0048W] || SNR34 || snR34 || snoRNA gene || 899180..899382 || +
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0049C YNCL0049C] ||  || tL(UAA)L, tRNA-Leu || tRNA gene || 962972..963055 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0050C YNCL0050C] ||  || tN(GUU)L, tRNA-Asn || tRNA gene || 975983..976056 || -
|-
| XII || [https://www.yeastgenome.org/locus/YNCL0051C YNCL0051C] ||  || tI(AAU)L2, tRNA-Ile || tRNA gene || 1052071..1052144 || -
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0001W YNCM0001W] ||  || PHO84 lncRNA || ncRNA gene || 23564..26578 || +
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0002C YNCM0002C] || SNR85 || snR85 || snoRNA gene || 67768..67938 || -
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0003W YNCM0003W] || ZOD1 ||  || ncRNA gene || 91970..92027 || +
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0004C YNCM0004C] ||  || tR(UCU)M2, tRNA-Arg || tRNA gene || 131825..131896 || -
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0005C YNCM0005C] || SNR54 || snR54 || snoRNA gene || 163535..163620 || -
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0006W YNCM0006W] || SUP5 || tY(GUA)M1, tRNA-Tyr || tRNA gene || 168795..168883 || +
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0007C YNCM0007C] ||  || tG(GCC)M, tRNA-Gly || tRNA gene || 183898..183968 || -
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0008C YNCM0008C] || SUF7 || tP(UGG)M, tRNA-Pro || tRNA gene || 196068..196170 || -
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0009C YNCM0009C] ||  || tS(AGA)M, tRNA-Ser || tRNA gene || 259158..259239 || -
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0010W YNCM0010W] ||  || tE(UUC)M, tRNA-Glu || tRNA gene || 290801..290872 || +
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0011W YNCM0011W] || SNR78 || snR78 || snoRNA gene || 297278..297364 || +
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0012W YNCM0012W] || SNR77 || snR77 || snoRNA gene || 297506..297593 || +
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0013W YNCM0013W] || SNR76 || snR76 || snoRNA gene || 297725..297833 || +
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0014W YNCM0014W] || SNR75 || snR75 || snoRNA gene || 297918..298006 || +
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0015W YNCM0015W] || SNR74 || snR74 || snoRNA gene || 298138..298225 || +
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0016W YNCM0016W] || SNR73 || snR73 || snoRNA gene || 298307..298412 || +
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0017W YNCM0017W] || SNR72 || snR72 || snoRNA gene || 298554..298651 || +
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0018C YNCM0018C] ||  || tA(AGC)M1, tRNA-Ala || tRNA gene || 321147..321219 || -
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0019W YNCM0019W] ||  || tF(GAA)M, tRNA-Phe || tRNA gene || 352280..352370 || +
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0020W YNCM0020W] ||  || tH(GUG)M, tRNA-His || tRNA gene || 363064..363135 || +
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0021C YNCM0021C] ||  || tV(AAC)M1, tRNA-Val || tRNA gene || 372445..372518 || -
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0022C YNCM0022C] ||  || tW(CCA)M, tRNA-Trp || tRNA gene || 379303..379408 || -
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0023C YNCM0023C] ||  || tV(AAC)M2, tRNA-Val || tRNA gene || 420588..420661 || -
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0024W YNCM0024W] ||  || tD(GUC)M, tRNA-Asp || tRNA gene || 463554..463625 || +
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0025C YNCM0025C] ||  || tK(CUU)M, tRNA-Lys || tRNA gene || 480621..480693 || -
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0026C YNCM0026C] || SNR24 || snR24 || snoRNA gene || 499984..500072 || -
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0027W YNCM0027W] ||  || tL(CAA)M, tRNA-Leu || tRNA gene || 504895..505008 || +
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0028C YNCM0028C] || EMT4 || tM(CAU)M, tRNA-Met || tRNA gene || 572883..572955 || -
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0029C YNCM0029C] ||  || tV(AAC)M3, tRNA-Val || tRNA gene || 586636..586709 || -
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0030W YNCM0030W] || SNR83 || snR83 || snoRNA gene || 626349..626654 || +
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0031W YNCM0031W] || SNR11 || snR11 || snoRNA gene || 652275..652532 || +
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0032C YNCM0032C] || RNA170 ||  || ncRNA gene || 667288..667456 || -
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0033C YNCM0033C] ||  || tR(UCU)M1, tRNA-Arg || tRNA gene || 747892..747963 || -
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0034C YNCM0034C] || SNR86 || snR86 || snoRNA gene || 762110..763113 || -
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0035C YNCM0035C] ||  || tA(AGC)M2, tRNA-Ala || tRNA gene || 768369..768441 || -
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0036C YNCM0036C] || CDC65 || tQ(CUG)M, tRNA-Gln || tRNA gene || 808246..808317 || -
|-
| XIII || [https://www.yeastgenome.org/locus/YNCM0037W YNCM0037W] || SUP8 || tY(GUA)M2, tRNA-Tyr || tRNA gene || 837928..838016 || +
|-
| XIV || [https://www.yeastgenome.org/locus/YNCN0001W YNCN0001W] || SNR40 || snR40 || snoRNA gene || 89210..89306 || +
|-
| XIV || [https://www.yeastgenome.org/locus/YNCN0002C YNCN0002C] || SUF6 || tG(UCC)N, tRNA-Gly || tRNA gene || 96241..96312 || -
|-
| XIV || [https://www.yeastgenome.org/locus/YNCN0003W YNCN0003W] ||  || tN(GUU)N1, tRNA-Asn || tRNA gene || 102716..102789 || +
|-
| XIV || [https://www.yeastgenome.org/locus/YNCN0004W YNCN0004W] ||  || tT(AGU)N1, tRNA-Thr || tRNA gene || 104805..104877 || +
|-
| XIV || [https://www.yeastgenome.org/locus/YNCN0005C YNCN0005C] || SNR19 || snR19 || snRNA gene || 230105..230672 || -
|-
| XIV || [https://www.yeastgenome.org/locus/YNCN0006W YNCN0006W] ||  || tF(GAA)N, tRNA-Phe || tRNA gene || 374869..374959 || +
|-
| XIV || [https://www.yeastgenome.org/locus/YNCN0007W YNCN0007W] ||  || tL(CAA)N, tRNA-Leu || tRNA gene || 443006..443119 || +
|-
| XIV || [https://www.yeastgenome.org/locus/YNCN0008C YNCN0008C] ||  || tD(GUC)N, tRNA-Asp || tRNA gene || 519099..519169 || -
|-
| XIV || [https://www.yeastgenome.org/locus/YNCN0009W YNCN0009W] ||  || tP(UGG)N1, tRNA-Pro || tRNA gene || 547094..547196 || +
|-
| XIV || [https://www.yeastgenome.org/locus/YNCN0010C YNCN0010C] ||  || tT(AGU)N2, tRNA-Thr || tRNA gene || 560693..560765 || -
|-
| XIV || [https://www.yeastgenome.org/locus/YNCN0011W YNCN0011W] ||  || tP(UGG)N2, tRNA-Pro || tRNA gene || 568115..568217 || +
|-
| XIV || [https://www.yeastgenome.org/locus/YNCN0012C YNCN0012C] ||  || tI(AAU)N1, tRNA-Ile || tRNA gene || 569867..569940 || -
|-
| XIV || [https://www.yeastgenome.org/locus/YNCN0013W YNCN0013W] || NME1 ||  || snoRNA gene || 585587..585926 || +
|-
| XIV || [https://www.yeastgenome.org/locus/YNCN0014W YNCN0014W] || SNR66 || snR66 || snoRNA gene || 586090..586175 || +
|-
| XIV || [https://www.yeastgenome.org/locus/YNCN0015W YNCN0015W] ||  || tI(AAU)N2, tRNA-Ile || tRNA gene || 602312..602385 || +
|-
| XIV || [https://www.yeastgenome.org/locus/YNCN0016C YNCN0016C] || SUF10 || tP(AGG)N, tRNA-Pro || tRNA gene || 631846..631917 || -
|-
| XIV || [https://www.yeastgenome.org/locus/YNCN0017W YNCN0017W] ||  || tN(GUU)N2, tRNA-Asn || tRNA gene || 632599..632672 || +
|-
| XIV || [https://www.yeastgenome.org/locus/YNCN0018W YNCN0018W] || SNR49 || snR49 || snoRNA gene || 716120..716284 || +
|-
| XIV || [https://www.yeastgenome.org/locus/YNCN0019C YNCN0019C] || SNR191 || snR191 || snoRNA gene || 721938..722211 || -
|-
| XIV || [https://www.yeastgenome.org/locus/YNCN0020C YNCN0020C] ||  || tL(UAA)N, tRNA-Leu || tRNA gene || 726134..726217 || -
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0001C YNCO0001C] || SUF1 || tG(UCC)O, tRNA-Gly || tRNA gene || 110962..111033 || -
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0002W YNCO0002W] ||  || tT(AGU)O1, tRNA-Thr || tRNA gene || 113802..113874 || +
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0003C YNCO0003C] || SNR58 || snR58 || snoRNA gene || 136088..136183 || -
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0004C YNCO0004C] ||  || tG(GCC)O1, tRNA-Gly || tRNA gene || 226611..226681 || -
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0005W YNCO0005W] ||  || tN(GUU)O1, tRNA-Asn || tRNA gene || 228331..228404 || +
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0006W YNCO0006W] || SNR81 || snR81 || snoRNA gene || 234346..234546 || +
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0007W YNCO0007W] || SNR50 || snR50 || snoRNA gene || 259489..259578 || +
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0008W YNCO0008W] ||  || tS(GCU)O, tRNA-Ser || tRNA gene || 274673..274773 || +
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0009W YNCO0009W] || SUF17 || tG(GCC)O2, tRNA-Gly || tRNA gene || 282164..282234 || +
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0010W YNCO0010W] || SUP3 || tY(GUA)O, tRNA-Tyr || tRNA gene || 288192..288280 || +
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0011W YNCO0011W] ||  || tP(UGG)O1, tRNA-Pro || tRNA gene || 301097..301198 || +
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0012C YNCO0012C] ||  || tR(ACG)O, tRNA-ARg || tRNA gene || 340299..340371 || -
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0013C YNCO0013C] ||  || tT(AGU)O2, tRNA-Thr || tRNA gene || 354041..354113 || -
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0014C YNCO0014C] || SNR9 || snR9 || snoRNA gene || 407948..408134 || -
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0015C YNCO0015C] || SNR62 || snR62 || snoRNA gene || 409765..409864 || -
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0016W YNCO0016W] ||  || tK(UUU)O, tRNA-Lys || tRNA gene || 438643..438738 || +
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0017W YNCO0017W] || SUF11 || tP(UGG)O2, tRNA-Pro || tRNA gene || 464450..464551 || +
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0018W YNCO0018W] ||  || tN(GUU)O2, tRNA-Asn || tRNA gene || 487439..487512 || +
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0019W YNCO0019W] ||  || tD(GUC)O, tRNA-Asp || tRNA gene || 571958..572029 || +
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0020C YNCO0020C] || SUF5 || tG(CCC)O || tRNA gene || 594354..594425 || -
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0021C YNCO0021C] ||  || tV(AAC)O || tRNA gene || 663812..663885 || -
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0022C YNCO0022C] || SNR36 || snR36 || snoRNA gene || 680685..680866 || -
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0023W YNCO0023W] || IMT1 || tM(CAU)O1, tRNA-Met || tRNA gene || 710201..710272 || +
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0024C YNCO0024C] || SNR35 || snR35 || snoRNA gene || 759326..759529 || -
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0025W YNCO0025W] || SNR17A || snR17a || snoRNA gene || 780107..780596 || +
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0026W YNCO0026W] || SNR8 || snR8 || snoRNA gene || 832332..832521 || +
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0027C YNCO0027C] || SNR31 || snR31 || snoRNA gene || 841958..842182 || -
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0028W YNCO0028W] || SNR5 || snR5 || snoRNA gene || 842403..842606 || +
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0029C YNCO0029C] ||  || tA(UGC)O, tRNA-Ala || tRNA gene || 854187..854259 || -
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0030W YNCO0030W] || EMT2 || tM(CAU)O2, tRNA-Met || tRNA gene || 976421..976493 || +
|-
| XV || [https://www.yeastgenome.org/locus/YNCO0031W YNCO0031W] ||  || tP(UGG)O3, tRNA-Pro || tRNA gene || 980683..980787 || +
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0001C YNCP0001C] ||  || tW(CCA)P, tRNA-Trp || tRNA gene || 56169..56274 || -
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0002W YNCP0002W] ||  || GAL4 lncRNA || ncRNA gene || 79562..82648 || +
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0003W YNCP0003W] || SNR59 || snR59 || snoRNA gene || 173827..173904 || +
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0004C YNCP0004C] ||  || tE(UUC)P, tRNA-Glu || tRNA gene || 210192..210263 || -
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0005C YNCP0005C] || SNR17B || snR17b || snoRNA gene || 281056..281517 || -
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0006C YNCP0006C] || IMT2 || tM(CAU)P, tRNA-Met || tRNA gene || 338848..338919 || -
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0007C YNCP0007C] ||  || tC(GCA)P1, tRNA-Cys || tRNA gene || 435893..435964 || -
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0008C YNCP0008C] ||  || tF(GAA)P1, tRNA-Phe || tRNA gene || 560198..560289 || -
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0009W YNCP0009W] ||  || tG(GCC)P1, tRNA-Gly || tRNA gene || 572269..572339 || +
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0010W YNCP0010W] ||  || tK(CUU)P, tRNA-Lys || tRNA gene || 582062..582134 || +
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0011C YNCP0011C] ||  || tF(GAA)P2, tRNA-Phe || tRNA gene || 622540..622631 || -
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0012W YNCP0012W] || SUP16 || tS(UGA)P, tRNA-Ser || tRNA gene || 689565..689646 || +
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0013C YNCP0013C] || SNR51 || snR51 || snoRNA gene || 718700..718806 || -
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0014C YNCP0014C] || SNR70 || snR70 || snoRNA gene || 718887..719050 || -
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0015C YNCP0015C] || SNR41 || snR41 || snoRNA gene || 719148..719242 || -
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0016W YNCP0016W] ||  || tT(UGU)P, tRNA-Thr || tRNA gene || 744284..744355 || +
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0017C YNCP0017C] ||  || tK(UUU)P, tRNA-Lys || tRNA gene || 769207..769302 || -
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0018C YNCP0018C] ||  || tC(GCA)P2, tRNA-Cys || tRNA gene || 775765..775836 || -
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0019W YNCP0019W] ||  || tN(GUU)P, tRNA-Asn || tRNA gene || 810676..810749 || +
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0020W YNCP0020W] ||  || tI(AAU)P1, tRNA-Ile || tRNA gene || 819529..819602 || +
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0021W YNCP0021W] || SNR45 || snR45 || snoRNA gene || 821732..821903 || +
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0022W YNCP0022W] ||  || tA(AGC)P, tRNA-Ala || tRNA gene || 856902..856974 || +
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0023W YNCP0023W] ||  || tG(GCC)P2, tRNA-Gly || tRNA gene || 860379..860449 || +
|-
| XVI || [https://www.yeastgenome.org/locus/YNCP0024C YNCP0024C] ||  || tI(AAU)P2, tRNA-Ile || tRNA gene || 880296..880369 || -
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0001W YNCQ0001W] ||  || tP(UGG)Q, tRNA-Pro || tRNA gene || 731..802 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0002W YNCQ0002W] || 15S_RRNA || Q0020 || rRNA gene || 6546..8194 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0003W YNCQ0003W] ||  || tW(UCA)Q, tRNA-Trp || tRNA gene || 9374..9447 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0004W YNCQ0004W] ||  || tE(UUC)Q, tRNA-Glu || tRNA gene || 35373..35444 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0005W YNCQ0005W] ||  || tS(UGA)Q2, tRNA-Ser || tRNA gene || 48201..48290 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0006W YNCQ0006W] || 21S_RRNA || Q0158 || rRNA gene || 58009..62447 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0007W YNCQ0007W] ||  || tT(UGU)Q1, tRNA-Thr || tRNA gene || 63862..63937 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0008W YNCQ0008W] ||  || tC(GCA)Q, tRNA-Cys || tRNA gene || 64415..64490 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0009W YNCQ0009W] ||  || tH(GUG)Q, tRNA-His || tRNA gene || 64596..64670 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0010W YNCQ0010W] ||  || tL(UAA)Q, tRNA-Leu || tRNA gene || 66095..66179 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0011W YNCQ0011W] ||  || tQ(UUG)Q, tRNA-Gln || tRNA gene || 66210..66285 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0012W YNCQ0012W] ||  || tK(UUU)Q, tRNA-Lys || tRNA gene || 67061..67134 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0013W YNCQ0013W] ||  || tR(UCU)Q1, tRNA-Arg || tRNA gene || 67309..67381 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0014W YNCQ0014W] ||  || tG(UCC)Q, tRNA-Gly || tRNA gene || 67468..67542 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0015W YNCQ0015W] ||  || tD(GUC)Q, tRNA-Asp || tRNA gene || 68322..68396 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0016W YNCQ0016W] ||  || tS(GCU)Q1, tRNA-Ser || tRNA gene || 69203..69288 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0017W YNCQ0017W] ||  || tR(ACG)Q2, tRNA-Arg || tRNA gene || 69289..69362 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0018W YNCQ0018W] ||  || tA(UGC)Q, tRNA-Ala || tRNA gene || 69846..69921 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0019W YNCQ0019W] ||  || tI(GAU)Q, tRNA-Ile || tRNA gene || 70162..70237 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0020W YNCQ0020W] ||  || tY(GUA)Q, tRNA-Tyr || tRNA gene || 70824..70907 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0021W YNCQ0021W] ||  || tN(GUU)Q, tRNA-Asn || tRNA gene || 71433..71503 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0022W YNCQ0022W] ||  || tM(CAU)Q1, tRNA-Met || tRNA gene || 72630..72705 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0023W YNCQ0023W] ||  || tF(GAA)Q, tRNA-Phe || tRNA gene || 77431..77505 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0024C YNCQ0024C] ||  || tT(UAG)Q2, tRNA-Thr || tRNA gene || 78089..78162 || -
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0025W YNCQ0025W] ||  || tV(UAC)Q, tRNA-Val || tRNA gene || 78533..78608 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0026W YNCQ0026W] ||  || tM(CAU)Q2, tRNA-Met || tRNA gene || 85035..85112 || +
|-
| Mito || [https://www.yeastgenome.org/locus/YNCQ0027W YNCQ0027W] || RPM1 || Q0285 || ncRNA gene || 85295..85777 || +
|}