SGD-Wiki - User contributions [en]

File:MochiView.png

2010-04-23T00:16:26Z

Papamsurf: MochiView software logo

MochiView software logo

MochiView

2010-04-23T00:13:45Z

Papamsurf:

*[http://johnsonlab.ucsf.edu/sj/mochiview-start/ Link to MochiView website]

''(Page created by Oliver Homann, author of MochiView)''

MochiView is a platform-independent Java genome browser and motif analysis software. Hopefully some of you may find it useful. The
software was originally designed for visualization and analysis of
''C. albicans'' ChIP-Chip data, but has also been utilized for pure
motif analysis as well as with ChIP-Seq/RNA-Seq data and with multiple
additional genomes, including ''S. cerevisiae'' and humans. It
takes ~10 minutes to download the software and install the necessary
genome sequence and gene information (using the GFF files stored on
[http://downloads.yeastgenome.org/chromosomal_feature SGD],[http://www.candidagenome.org/download/gff/ CGD], or [http://www.aspgd.org/download/gff/ AspGD]). Visit the MochiView website to view:

*[http://johnsonlab.ucsf.edu/sj/mochiview-screenshots/ Demo videos]

*[http://johnsonlab.ucsf.edu/sj/mochiview-features/ List of features]

*[http://johnsonlab.ucsf.edu/sj/mochiview-software/ Software download]

*[http://johnsonlab.ucsf.edu/sj/mochiview-genome-downloads/ Genome import instructions]

*[http://johnsonlab.ucsf.edu/sj/mochiview-motif_libraries/ Motif library downloads]

Contributions to the MochiView motif libraries would be appreciated! [http://johnsonlab.ucsf.edu/sj/mochiview-contact/ Contact us] with suggestions, or to join the MochiView mailing list.

MochiView

2010-04-23T00:13:03Z

Papamsurf:

*[http://johnsonlab.ucsf.edu/sj/mochiview-start/ Link to MochiView website]

''(Page created by Oliver Homann, author of MochiView)''

MochiView is a platform-independent Java genome browser and motif analysis software. Hopefully some of you may find it useful. The
software was originally designed for visualization and analysis of
''C. albicans'' ChIP-Chip data, but has also been utilized for pure
motif analysis as well as with ChIP-Seq/RNA-Seq data and with multiple
additional genomes, including ''S. cerevisiae'' and humans. It
takes ~10 minutes to download the software and install the necessary
genome sequence and gene information (using the GFF files stored on
[http://downloads.yeastgenome.org/chromosomal_feature SGD],[http://www.cgd.org//download/gff/ CGD], or [http://www.aspgd.org/download/gff/ AspGD]). Visit the MochiView website to view:

*[http://johnsonlab.ucsf.edu/sj/mochiview-screenshots/ Demo videos]

*[http://johnsonlab.ucsf.edu/sj/mochiview-features/ List of features]

*[http://johnsonlab.ucsf.edu/sj/mochiview-software/ Software download]

*[http://johnsonlab.ucsf.edu/sj/mochiview-genome-downloads/ Genome import instructions]

*[http://johnsonlab.ucsf.edu/sj/mochiview-motif_libraries/ Motif library downloads]

Contributions to the MochiView motif libraries would be appreciated! [http://johnsonlab.ucsf.edu/sj/mochiview-contact/ Contact us] with suggestions, or to join the MochiView mailing list.

MochiView

2010-04-23T00:10:13Z

Papamsurf: Created page with '*[http://johnsonlab.ucsf.edu/sj/mochiview-start/ Link to MochiView website] An announcement from Oliver Homann: Hello, I'd like to alert the community to the availabi…'

*[http://johnsonlab.ucsf.edu/sj/mochiview-start/ Link to MochiView website]

An announcement from Oliver Homann: 

Hello, I'd like to alert the community to the availability of a new
platform-independent Java genome browser and motif analysis software
called MochiView. Hopefully some of you may find it useful. The
software was originally designed for visualization and analysis of
''C. albicans'' ChIP-Chip data, but has also been utilized for pure
motif analysis as well as with ChIP-Seq/RNA-Seq data and with multiple
additional genomes, including ''S. cerevisiae'' and humans. It
takes ~10 minutes to download the software and install the necessary
genome sequence and gene information (using the GFF files stored on
[http://downloads.yeastgenome.org/chromosomal_feature SGD],[http://www.cgd.org//download/gff/ CGD], or [http://www.aspgd.org/download/gff/ AspGD]). Visit the MochiView website to view:

*[http://johnsonlab.ucsf.edu/sj/mochiview-screenshots/ Demo videos]

*[http://johnsonlab.ucsf.edu/sj/mochiview-features/ List of features]

*[http://johnsonlab.ucsf.edu/sj/mochiview-software/ Software download]

*[http://johnsonlab.ucsf.edu/sj/mochiview-genome-downloads/ Genome import instructions]

*[http://johnsonlab.ucsf.edu/sj/mochiview-motif_libraries/ Motif library downloads]

Contributions to the MochiView motif libraries would be appreciated! [http://johnsonlab.ucsf.edu/sj/mochiview-contact/ Contact us] with suggestions, or to join the MochiView mailing list.

Software

2010-04-23T00:02:14Z

Papamsurf: Created page with '*MochiView Desktop genome browsing and motif analysis software (with easy import of S. cerevisiae genome/genes/motif libraries)'

*[[MochiView]] Desktop genome browsing and motif analysis software (with easy import of S. cerevisiae genome/genes/motif libraries)

Main Page

2010-04-22T23:59:24Z

Papamsurf: /* Table of Contents */

<protect>
<big>'''Welcome to the Yeast Wiki'''</big>

[[Image:Wiki-invite3.jpg|right]]
* Use the search box in left-hand navigation bar to find or create specific wiki pages.
* Find already existing gene pages pre-filled with basic info from SGD by entering an ORF or gene name into the search box.
* Use these wiki pages as a place to enter your observations or notes for a gene or ORF.
* It's easy to add info! Just create an account via the "Log in/Create an account" link in the upper right-hand corner of this page.

 

==Table of Contents==

[[Methods|Protocols and Methods]]: Includes useful yeast protocols and methods posted by researchers.

[[Reagents|Reagents]]: Includes links to plasmid collections and other useful reagents, such as antibodies.

[[Strains|Strains]]: Includes information about strain collections and the major yeast strain backgrounds.

[[Software|Software]]: Includes software that may be of use to S. cerevisiae researchers

[[General_Topics|General Topics]]: A collection of information about the general biology of S. cerevisiae and other fungi, including educational resources.

[[Career_Resources|Career Resources]]: Includes links to job opportunities posted by researchers.

== Useful Wiki Links ==

[http://meta.wikimedia.org/wiki/Help:Contents MediaWiki User's Guide] | [http://www.mediawiki.org/wiki/Help:FAQ MediaWiki FAQ] | [http://meta.wikimedia.org/wiki/Help:Wikitext Quick Guide to Editing Wiki Text]
</protect>